Wall clock time and date at job start Tue Mar 31 2020 20:27:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46504 * 109.47141 * 2 1 4 4 C 1.35032 * 124.88319 * 124.97196 * 3 2 1 5 5 C 1.35372 * 107.22758 * 179.76685 * 4 3 2 6 6 C 1.41500 * 105.50123 * 0.36132 * 5 4 3 7 7 C 1.47712 * 126.51792 * 179.90130 * 6 5 4 8 8 O 1.21570 * 119.99641 * 359.71302 * 7 6 5 9 9 N 1.34770 * 120.00094 * 179.71270 * 7 6 5 10 10 C 1.46500 * 120.00256 * 179.97438 * 9 7 6 11 11 H 1.09001 * 109.47049 * 35.00040 * 10 9 7 12 12 C 1.52996 * 109.47249 * 275.00159 * 10 9 7 13 13 C 1.52997 * 109.47473 * 154.99855 * 10 9 7 14 14 H 1.09001 * 109.47289 * 60.00327 * 13 10 9 15 15 C 1.53006 * 109.47127 * 300.00373 * 13 10 9 16 16 N 1.46899 * 109.47254 * 180.02562 * 13 10 9 17 17 C 1.46903 * 110.99807 * 205.00073 * 16 13 10 18 18 C 1.50705 * 109.46848 * 179.97438 * 17 16 13 19 19 O 1.21284 * 119.99984 * 0.02562 * 18 17 16 20 20 N 1.34777 * 119.99593 * 179.97438 * 18 17 16 21 21 C 1.37101 * 119.99901 * 179.97438 * 20 18 17 22 22 H 1.08001 * 119.99727 * 0.02562 * 21 20 18 23 23 C 1.38948 * 120.00293 * 180.02562 * 21 20 18 24 24 N 1.31412 * 119.99845 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 120.00116 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47026 * 90.00067 * 25 23 21 27 27 H 1.48498 * 109.47025 * 209.99893 * 25 23 21 28 28 H 1.48494 * 109.47249 * 330.00369 * 25 23 21 29 29 N 1.28467 * 124.88678 * 304.98121 * 3 2 1 30 30 H 1.09000 * 109.47558 * 60.00223 * 1 2 3 31 31 H 1.09005 * 109.46663 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47228 * 299.99261 * 1 2 3 33 33 H 1.09008 * 109.47467 * 240.00578 * 2 1 3 34 34 H 1.09001 * 109.47922 * 120.00167 * 2 1 3 35 35 H 1.07995 * 126.38729 * 0.04707 * 4 3 2 36 36 H 1.07994 * 127.24900 * 180.24821 * 5 4 3 37 37 H 0.97005 * 120.00370 * 359.97438 * 9 7 6 38 38 H 1.09000 * 109.47380 * 180.02562 * 12 10 9 39 39 H 1.09001 * 109.46997 * 299.99913 * 12 10 9 40 40 H 1.09000 * 109.47054 * 59.99646 * 12 10 9 41 41 H 1.09001 * 109.47002 * 299.99574 * 15 13 10 42 42 H 1.08993 * 109.46955 * 60.00011 * 15 13 10 43 43 H 1.09000 * 109.47050 * 179.97438 * 15 13 10 44 44 H 1.00902 * 111.00121 * 81.04671 * 16 13 10 45 45 H 1.09000 * 109.47514 * 299.99609 * 17 16 13 46 46 H 1.08999 * 109.47620 * 60.00050 * 17 16 13 47 47 H 0.97001 * 120.00519 * 0.02562 * 20 18 17 48 48 H 0.96996 * 120.00219 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.8743 1.8977 0.9077 5 6 3.0865 3.1909 0.5682 6 6 2.3004 3.4124 -0.5873 7 6 2.1865 4.6759 -1.3440 8 8 2.8033 5.6589 -0.9818 9 7 1.3989 4.7389 -2.4358 10 6 1.2855 5.9921 -3.1859 11 1 2.2433 6.5123 -3.1712 12 6 0.2150 6.8762 -2.5431 13 6 0.8933 5.6867 -4.6329 14 1 -0.0644 5.1666 -4.6478 15 6 1.9639 4.8026 -5.2758 16 7 0.7802 6.9434 -5.3852 17 6 -0.1246 6.7905 -6.5324 18 6 -0.2158 8.0971 -7.2778 19 8 0.4117 9.0606 -6.8917 20 7 -0.9938 8.1946 -8.3740 21 6 -1.0771 9.3834 -9.0519 22 1 -0.5190 10.2416 -8.7077 23 6 -1.8796 9.4842 -10.1818 24 7 -2.5582 8.4398 -10.6009 25 14 -1.9937 11.1041 -11.1049 26 1 -0.9418 11.1522 -12.1521 27 1 -3.3308 11.2183 -11.7408 28 1 -1.7991 12.2295 -10.1559 29 7 1.6936 2.2754 -0.8634 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5137 0.8900 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5138 0.8899 35 1 3.3119 1.3752 1.7454 36 1 3.7206 3.9039 1.0740 37 1 0.9071 3.9543 -2.7250 38 1 0.1303 7.8085 -3.1015 39 1 -0.7427 6.3560 -2.5579 40 1 0.4945 7.0938 -1.5123 41 1 2.9217 5.3228 -5.2610 42 1 2.0482 3.8702 -4.7177 43 1 1.6843 4.5847 -6.3065 44 1 1.6876 7.2704 -5.6815 45 1 0.2600 6.0181 -7.1982 46 1 -1.1152 6.5048 -6.1783 47 1 -1.4953 7.4240 -8.6830 48 1 -3.1187 8.5102 -11.3894 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001505703146.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:04 Heat of formation + Delta-G solvation = -22.789162 kcal Electronic energy + Delta-G solvation = -28431.107090 eV Core-core repulsion = 24328.646416 eV Total energy + Delta-G solvation = -4102.460674 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.59569 -40.81858 -40.12502 -38.38944 -36.04729 -35.47835 -35.36994 -33.26622 -32.31871 -31.48102 -30.85691 -30.37151 -27.94180 -26.06694 -25.84134 -24.34173 -23.06541 -22.31033 -21.74942 -21.04190 -20.88398 -19.90645 -18.90201 -17.82707 -17.53329 -17.37871 -16.94680 -16.62724 -16.37832 -15.94474 -15.86034 -15.33826 -15.28664 -15.16643 -15.12190 -14.62051 -14.45897 -14.29924 -14.10171 -13.91231 -13.52472 -13.37532 -13.29759 -13.15798 -12.98633 -12.94838 -12.72139 -12.57089 -12.40505 -12.30262 -12.24536 -12.11895 -11.83746 -11.67949 -11.49494 -11.25262 -10.37879 -10.29961 -10.12714 -9.99844 -9.95294 -9.29136 -8.45590 -5.93890 0.54994 1.22546 1.38510 1.42256 1.54842 1.56401 2.07216 2.08048 2.31270 2.38800 3.00710 3.21898 3.34865 3.56950 3.64265 3.93452 3.99462 4.02750 4.07915 4.20508 4.28794 4.32858 4.39469 4.47206 4.48372 4.57408 4.62716 4.74818 4.78420 4.79668 4.83085 4.86015 4.90262 4.96404 5.05969 5.20153 5.25409 5.34814 5.39523 5.42389 5.51239 5.90271 5.92622 6.10945 6.36299 6.46105 6.61926 6.93480 7.14363 7.19075 7.58293 8.14054 8.71768 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.025007 B = 0.001780 C = 0.001706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.430994 B =15728.296128 C =16410.804554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.107 3.893 3 N -0.276 5.276 4 C 0.001 3.999 5 C -0.208 4.208 6 C -0.048 4.048 7 C 0.602 3.398 8 O -0.574 6.574 9 N -0.697 5.697 10 C 0.160 3.840 11 H 0.068 0.932 12 C -0.145 4.145 13 C 0.087 3.913 14 H 0.100 0.900 15 C -0.178 4.178 16 N -0.671 5.671 17 C 0.069 3.931 18 C 0.438 3.562 19 O -0.623 6.623 20 N -0.573 5.573 21 C -0.333 4.333 22 H 0.078 0.922 23 C -0.013 4.013 24 N -0.920 5.920 25 Si 0.992 3.008 26 H -0.271 1.271 27 H -0.270 1.270 28 H -0.275 1.275 29 N -0.269 5.269 30 H 0.053 0.947 31 H 0.103 0.897 32 H 0.054 0.946 33 H 0.104 0.896 34 H 0.141 0.859 35 H 0.226 0.774 36 H 0.159 0.841 37 H 0.413 0.587 38 H 0.067 0.933 39 H 0.063 0.937 40 H 0.039 0.961 41 H 0.050 0.950 42 H 0.074 0.926 43 H 0.064 0.936 44 H 0.346 0.654 45 H 0.070 0.930 46 H 0.107 0.893 47 H 0.397 0.603 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.382 -25.756 22.112 34.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.011 4.011 3 N -0.066 5.066 4 C -0.142 4.142 5 C -0.236 4.236 6 C -0.206 4.206 7 C 0.388 3.612 8 O -0.452 6.452 9 N -0.348 5.348 10 C 0.055 3.945 11 H 0.086 0.914 12 C -0.203 4.203 13 C -0.024 4.024 14 H 0.118 0.882 15 C -0.236 4.236 16 N -0.303 5.303 17 C -0.064 4.064 18 C 0.226 3.774 19 O -0.509 6.509 20 N -0.211 5.211 21 C -0.463 4.463 22 H 0.096 0.904 23 C -0.213 4.213 24 N -0.561 5.561 25 Si 0.816 3.184 26 H -0.196 1.196 27 H -0.195 1.195 28 H -0.199 1.199 29 N -0.107 5.107 30 H 0.072 0.928 31 H 0.121 0.879 32 H 0.073 0.927 33 H 0.122 0.878 34 H 0.159 0.841 35 H 0.243 0.757 36 H 0.176 0.824 37 H 0.250 0.750 38 H 0.086 0.914 39 H 0.082 0.918 40 H 0.058 0.942 41 H 0.070 0.930 42 H 0.093 0.907 43 H 0.083 0.917 44 H 0.165 0.835 45 H 0.088 0.912 46 H 0.125 0.875 47 H 0.231 0.769 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.813 -24.799 22.084 33.711 hybrid contribution 0.541 0.309 -0.941 1.129 sum 6.354 -24.490 21.142 32.972 Atomic orbital electron populations 1.22065 0.93262 1.04523 1.02523 1.22478 0.96593 0.74760 1.07229 1.46125 1.31537 1.11158 1.17762 1.23472 0.97605 0.94445 0.98694 1.22001 1.05216 0.97836 0.98543 1.21828 1.04816 0.93069 1.00933 1.17188 0.78406 0.85698 0.79929 1.90776 1.47883 1.37351 1.69159 1.45733 1.47059 1.14615 1.27405 1.20715 0.99513 0.84138 0.90114 0.91399 1.21940 0.98322 1.00543 0.99523 1.21714 1.00054 0.89135 0.91485 0.88183 1.22461 0.98890 1.00801 1.01496 1.59950 1.16670 1.28910 1.24736 1.21549 0.99557 0.93211 0.92046 1.20904 0.82664 0.91388 0.82493 1.90503 1.49536 1.41469 1.69435 1.41919 1.41790 1.12834 1.24544 1.19655 1.27210 0.90958 1.08442 0.90439 1.26015 0.95463 1.02205 0.97600 1.69666 1.29541 1.31021 1.25840 0.84943 0.78014 0.77458 0.78012 1.19645 1.19506 1.19948 1.73373 1.22325 0.98060 1.16895 0.92795 0.87883 0.92678 0.87763 0.84101 0.75722 0.82356 0.74978 0.91363 0.91842 0.94159 0.93045 0.90708 0.91722 0.83517 0.91217 0.87461 0.76919 0.91328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.74 10.02 71.98 0.72 -0.01 16 2 C 0.11 0.31 7.12 86.38 0.61 0.93 16 3 N -0.28 -3.26 3.41 -347.94 -1.19 -4.45 16 4 C 0.00 0.01 11.40 83.54 0.95 0.96 16 5 C -0.21 -3.88 10.81 22.41 0.24 -3.64 16 6 C -0.05 -1.11 7.13 42.46 0.30 -0.80 16 7 C 0.60 16.66 7.79 86.75 0.68 17.34 16 8 O -0.57 -20.16 16.59 -3.94 -0.07 -20.23 16 9 N -0.70 -16.07 4.38 -445.55 -1.95 -18.02 16 10 C 0.16 4.17 2.34 44.99 0.11 4.27 16 11 H 0.07 2.11 7.58 -2.39 -0.02 2.09 16 12 C -0.14 -4.04 9.33 71.98 0.67 -3.37 16 13 C 0.09 2.04 2.22 44.92 0.10 2.14 16 14 H 0.10 2.03 7.80 -2.39 -0.02 2.02 16 15 C -0.18 -3.69 9.00 71.98 0.65 -3.04 16 16 N -0.67 -21.00 5.11 -495.56 -2.53 -23.53 16 17 C 0.07 2.29 5.97 85.56 0.51 2.80 16 18 C 0.44 20.84 7.82 87.66 0.69 21.53 16 19 O -0.62 -34.93 15.78 -3.04 -0.05 -34.98 16 20 N -0.57 -29.47 5.29 -306.98 -1.62 -31.09 16 21 C -0.33 -19.09 9.68 84.04 0.81 -18.27 16 22 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 23 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 24 N -0.92 -49.72 13.05 21.66 0.28 -49.44 16 25 Si 0.99 43.43 29.55 68.60 2.03 45.45 16 26 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 27 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 28 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 29 N -0.27 -5.02 11.36 -48.18 -0.55 -5.57 16 30 H 0.05 0.49 8.08 -2.39 -0.02 0.47 16 31 H 0.10 -0.01 8.14 -2.38 -0.02 -0.03 16 32 H 0.05 0.35 8.14 -2.39 -0.02 0.33 16 33 H 0.10 0.16 8.14 -2.38 -0.02 0.14 16 34 H 0.14 -0.60 8.04 -2.39 -0.02 -0.62 16 35 H 0.23 0.13 8.06 -2.91 -0.02 0.11 16 36 H 0.16 2.89 8.06 -2.91 -0.02 2.87 16 37 H 0.41 7.75 8.11 -92.70 -0.75 7.00 16 38 H 0.07 2.17 7.60 -2.39 -0.02 2.16 16 39 H 0.06 1.56 8.14 -2.39 -0.02 1.55 16 40 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.05 1.17 8.13 -2.39 -0.02 1.15 16 42 H 0.07 1.34 7.44 -2.39 -0.02 1.32 16 43 H 0.06 1.29 7.45 -2.39 -0.02 1.28 16 44 H 0.35 11.73 8.17 -89.69 -0.73 11.00 16 45 H 0.07 2.01 7.44 -2.39 -0.02 1.99 16 46 H 0.11 3.17 8.06 -2.39 -0.02 3.16 16 47 H 0.40 19.23 7.90 -92.71 -0.73 18.50 16 48 H 0.28 14.03 8.31 -92.71 -0.77 13.26 16 Total: -1.00 -79.02 406.05 0.65 -78.36 By element: Atomic # 1 Polarization: 44.12 SS G_CDS: -1.22 Total: 42.91 kcal Atomic # 6 Polarization: 13.06 SS G_CDS: 7.51 Total: 20.57 kcal Atomic # 7 Polarization: -124.53 SS G_CDS: -7.56 Total: -132.09 kcal Atomic # 8 Polarization: -55.09 SS G_CDS: -0.11 Total: -55.21 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.45 kcal Total: -79.02 0.65 -78.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505703146.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.576 kcal (2) G-P(sol) polarization free energy of solvation -79.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds