Wall clock time and date at job start Tue Mar 31 2020 20:26:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 109.47101 * 2 1 4 4 C 1.35032 * 124.88635 * 125.00577 * 3 2 1 5 5 C 1.35367 * 107.22837 * 179.97438 * 4 3 2 6 6 C 1.41504 * 105.50330 * 0.26137 * 5 4 3 7 7 C 1.47705 * 126.51490 * 179.70452 * 6 5 4 8 8 O 1.21564 * 120.00576 * 359.97438 * 7 6 5 9 9 N 1.34783 * 119.99706 * 179.97438 * 7 6 5 10 10 C 1.46500 * 120.00007 * 179.97438 * 9 7 6 11 11 C 1.52997 * 109.47307 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.47580 * 64.99579 * 11 10 9 13 13 C 1.53002 * 109.47316 * 185.00266 * 11 10 9 14 14 N 1.46911 * 109.46910 * 304.99886 * 11 10 9 15 15 C 1.46900 * 110.99889 * 298.95730 * 14 11 10 16 16 C 1.46899 * 110.99897 * 174.99896 * 14 11 10 17 17 C 1.50701 * 109.46769 * 189.99988 * 16 14 11 18 18 O 1.21295 * 120.00206 * 0.02562 * 17 16 14 19 19 N 1.34776 * 119.99612 * 179.97438 * 17 16 14 20 20 C 1.37103 * 119.99859 * 180.02562 * 19 17 16 21 21 H 1.07997 * 119.99450 * 0.02562 * 20 19 17 22 22 C 1.38949 * 119.99929 * 180.02562 * 20 19 17 23 23 N 1.31410 * 119.99992 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99753 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47080 * 60.00183 * 24 22 20 26 26 H 1.48498 * 109.47066 * 179.97438 * 24 22 20 27 27 H 1.48499 * 109.46993 * 299.99843 * 24 22 20 28 28 N 1.28472 * 124.88099 * 304.97612 * 3 2 1 29 29 H 1.09002 * 109.47257 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47049 * 299.99963 * 1 2 3 31 31 H 1.08997 * 109.47366 * 59.99683 * 1 2 3 32 32 H 1.08997 * 109.46781 * 240.00005 * 2 1 3 33 33 H 1.08998 * 109.46921 * 120.00024 * 2 1 3 34 34 H 1.07999 * 126.38674 * 359.94633 * 4 3 2 35 35 H 1.08002 * 127.24456 * 179.97438 * 5 4 3 36 36 H 0.97003 * 120.00212 * 0.02562 * 9 7 6 37 37 H 1.09005 * 109.46817 * 299.99967 * 10 9 7 38 38 H 1.09002 * 109.47133 * 60.00013 * 10 9 7 39 39 H 1.08997 * 109.46803 * 179.97438 * 13 11 10 40 40 H 1.08995 * 109.46595 * 299.99516 * 13 11 10 41 41 H 1.08994 * 109.46781 * 59.99529 * 13 11 10 42 42 H 1.08999 * 109.47191 * 59.99927 * 15 14 11 43 43 H 1.08995 * 109.46760 * 179.97438 * 15 14 11 44 44 H 1.08999 * 109.46921 * 299.99416 * 15 14 11 45 45 H 1.08996 * 109.47160 * 310.00018 * 16 14 11 46 46 H 1.08997 * 109.47126 * 70.00399 * 16 14 11 47 47 H 0.97000 * 120.00102 * 0.02562 * 19 17 16 48 48 H 0.97000 * 119.99993 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8748 1.8976 0.9073 5 6 3.0832 3.1920 0.5706 6 6 2.2961 3.4139 -0.5842 7 6 2.1753 4.6798 -1.3356 8 8 2.7900 5.6635 -0.9721 9 7 1.3834 4.7442 -2.4244 10 6 1.2631 5.9999 -3.1694 11 6 0.3106 5.8030 -4.3504 12 1 -0.6916 5.5917 -3.9776 13 6 0.2812 7.0753 -5.1996 14 7 0.7751 4.6768 -5.1716 15 6 2.1157 4.9376 -5.7127 16 6 -0.1793 4.3820 -6.2488 17 6 0.1983 3.0828 -6.9127 18 8 1.1668 2.4633 -6.5262 19 7 -0.5408 2.6089 -7.9352 20 6 -0.1976 1.4267 -8.5388 21 1 0.6647 0.8752 -8.1947 22 6 -0.9593 0.9384 -9.5934 23 7 -2.0089 1.6094 -10.0117 24 14 -0.4913 -0.6719 -10.4163 25 1 -0.5222 -1.7673 -9.4140 26 1 -1.4564 -0.9704 -11.5048 27 1 0.8762 -0.5586 -10.9839 28 7 1.6936 2.2753 -0.8636 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.3118 1.3753 1.7455 35 1 3.7134 3.9065 1.0794 36 1 0.8926 3.9593 -2.7143 37 1 0.8709 6.7760 -2.5122 38 1 2.2441 6.2984 -3.5392 39 1 -0.3971 6.9348 -6.0412 40 1 -0.0634 7.9108 -4.5903 41 1 1.2834 7.2865 -5.5724 42 1 2.8170 5.0836 -4.8911 43 1 2.4354 4.0881 -6.3161 44 1 2.0895 5.8342 -6.3319 45 1 -1.1831 4.2988 -5.8322 46 1 -0.1566 5.1859 -6.9844 47 1 -1.3156 3.1042 -8.2440 48 1 -2.5405 1.2687 -10.7481 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001506014994.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:12 Heat of formation + Delta-G solvation = 18.137153 kcal Electronic energy + Delta-G solvation = -29380.451121 eV Core-core repulsion = 25279.765145 eV Total energy + Delta-G solvation = -4100.685976 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.70395 -39.57535 -38.66318 -37.21909 -34.72760 -34.26030 -33.75292 -31.29970 -31.12142 -30.62831 -30.04041 -27.90006 -26.66768 -25.35907 -24.56755 -23.67851 -22.18079 -21.45737 -20.08454 -19.63276 -19.03542 -17.89988 -17.80933 -16.69101 -16.50297 -16.12067 -15.85896 -15.46666 -14.81570 -14.76921 -14.64676 -14.43112 -14.09278 -13.99471 -13.74786 -13.46735 -13.35513 -13.06244 -12.93343 -12.71703 -12.56615 -12.38168 -12.23556 -11.80192 -11.73102 -11.67615 -11.42976 -11.18188 -11.15694 -10.89086 -10.86412 -10.67846 -10.44082 -10.20467 -10.04088 -9.45218 -9.35148 -9.15567 -8.83210 -8.42988 -7.95896 -7.80943 -6.40683 -3.81277 1.61931 2.07446 2.32122 3.19893 3.25476 3.29466 3.31901 3.54845 3.92861 4.00400 4.15682 4.26307 4.58672 4.63317 4.72357 4.77134 4.85815 4.99975 5.15908 5.18572 5.24612 5.30003 5.33659 5.46550 5.51067 5.56090 5.60138 5.62760 5.68827 5.79576 5.83829 5.84575 5.94751 5.97656 6.05082 6.22828 6.30753 6.33073 6.57154 6.63608 6.66619 7.28800 7.40689 7.55898 7.63611 7.94767 8.07723 8.37336 8.63730 9.19610 9.56406 10.08779 10.77135 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009605 B = 0.003003 C = 0.002413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2914.506161 B = 9321.816843 C =11602.247586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.116 3.884 3 N -0.281 5.281 4 C -0.024 4.024 5 C -0.182 4.182 6 C -0.018 4.018 7 C 0.603 3.397 8 O -0.547 6.547 9 N -0.700 5.700 10 C 0.131 3.869 11 C 0.064 3.936 12 H 0.089 0.911 13 C -0.186 4.186 14 N -0.510 5.510 15 C 0.017 3.983 16 C 0.045 3.955 17 C 0.445 3.555 18 O -0.576 6.576 19 N -0.565 5.565 20 C -0.298 4.298 21 H 0.102 0.898 22 C 0.022 3.978 23 N -0.903 5.903 24 Si 0.929 3.071 25 H -0.274 1.274 26 H -0.285 1.285 27 H -0.274 1.274 28 N -0.247 5.247 29 H 0.079 0.921 30 H 0.061 0.939 31 H 0.077 0.923 32 H 0.096 0.904 33 H 0.102 0.898 34 H 0.180 0.820 35 H 0.160 0.840 36 H 0.418 0.582 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.064 0.936 40 H 0.062 0.938 41 H 0.063 0.937 42 H 0.060 0.940 43 H 0.094 0.906 44 H 0.020 0.980 45 H 0.087 0.913 46 H 0.050 0.950 47 H 0.391 0.609 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.136 3.164 19.325 19.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.004 4.004 3 N -0.070 5.070 4 C -0.167 4.167 5 C -0.210 4.210 6 C -0.179 4.179 7 C 0.387 3.613 8 O -0.424 6.424 9 N -0.351 5.351 10 C 0.007 3.993 11 C -0.046 4.046 12 H 0.107 0.893 13 C -0.245 4.245 14 N -0.233 5.233 15 C -0.131 4.131 16 C -0.087 4.087 17 C 0.230 3.770 18 O -0.460 6.460 19 N -0.202 5.202 20 C -0.428 4.428 21 H 0.120 0.880 22 C -0.179 4.179 23 N -0.545 5.545 24 Si 0.757 3.243 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.200 1.200 28 N -0.083 5.083 29 H 0.098 0.902 30 H 0.080 0.920 31 H 0.097 0.903 32 H 0.114 0.886 33 H 0.120 0.880 34 H 0.197 0.803 35 H 0.178 0.822 36 H 0.256 0.744 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.079 0.921 43 H 0.113 0.887 44 H 0.038 0.962 45 H 0.105 0.895 46 H 0.068 0.932 47 H 0.224 0.776 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.331 2.351 19.207 19.635 hybrid contribution -0.063 0.113 -0.769 0.780 sum 3.268 2.464 18.438 18.887 Atomic orbital electron populations 1.22081 0.92959 1.03518 1.04030 1.22033 0.96877 0.76683 1.04804 1.45672 1.32280 1.10501 1.18537 1.22849 0.99556 0.95521 0.98753 1.21742 1.04600 0.96051 0.98594 1.21940 1.03102 0.93195 0.99624 1.16883 0.79115 0.85385 0.79866 1.90758 1.46821 1.35904 1.68903 1.45715 1.47140 1.15046 1.27240 1.21417 0.99906 0.86076 0.91945 1.22049 0.98972 0.90133 0.93415 0.89335 1.22401 1.02867 0.98286 1.00944 1.61810 1.02585 1.36688 1.22229 1.22592 0.89793 1.01107 0.99576 1.21872 0.96524 0.96946 0.93308 1.19752 0.86173 0.87789 0.83271 1.90495 1.29334 1.60525 1.65599 1.41857 1.27077 1.21842 1.29458 1.19637 1.12235 0.98250 1.12637 0.88031 1.25238 0.95718 0.99623 0.97337 1.69602 1.17064 1.39523 1.28266 0.85940 0.78207 0.81569 0.78625 1.19939 1.21013 1.19953 1.73577 1.21888 0.97875 1.15003 0.90193 0.92031 0.90348 0.88565 0.88017 0.80326 0.82249 0.74444 0.91111 0.91243 0.91682 0.91891 0.91803 0.92078 0.88707 0.96196 0.89498 0.93221 0.77550 0.91871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.22 10.02 37.16 0.37 -0.85 16 2 C 0.12 0.82 7.12 -4.04 -0.03 0.79 16 3 N -0.28 -3.02 3.41 -61.33 -0.21 -3.22 16 4 C -0.02 -0.23 11.40 -17.17 -0.20 -0.43 16 5 C -0.18 -2.18 10.81 -39.36 -0.43 -2.61 16 6 C -0.02 -0.27 7.13 -82.77 -0.59 -0.86 16 7 C 0.60 9.53 7.82 -12.39 -0.10 9.43 16 8 O -0.55 -9.78 16.93 5.31 0.09 -9.69 16 9 N -0.70 -10.13 5.39 -61.29 -0.33 -10.46 16 10 C 0.13 1.68 4.68 -4.04 -0.02 1.66 16 11 C 0.06 0.79 2.50 -67.71 -0.17 0.62 16 12 H 0.09 1.03 8.03 -51.93 -0.42 0.61 16 13 C -0.19 -1.99 8.50 37.16 0.32 -1.67 16 14 N -0.51 -8.11 3.93 -236.33 -0.93 -9.04 16 15 C 0.02 0.28 8.46 60.06 0.51 0.79 16 16 C 0.04 0.77 4.89 -4.98 -0.02 0.75 16 17 C 0.44 10.28 7.47 -10.99 -0.08 10.19 16 18 O -0.58 -15.22 13.91 5.54 0.08 -15.14 16 19 N -0.57 -14.14 5.29 -10.96 -0.06 -14.19 16 20 C -0.30 -8.24 9.68 -14.93 -0.14 -8.38 16 21 H 0.10 2.94 7.16 -52.49 -0.38 2.57 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 23 N -0.90 -24.44 13.05 55.50 0.72 -23.72 16 24 Si 0.93 20.97 29.55 -169.99 -5.02 15.94 16 25 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 26 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 27 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 28 N -0.25 -3.46 11.36 33.42 0.38 -3.08 16 29 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.08 0.76 8.08 -51.93 -0.42 0.34 16 32 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.10 0.37 8.04 -51.93 -0.42 -0.05 16 34 H 0.18 0.91 8.06 -52.49 -0.42 0.49 16 35 H 0.16 1.71 8.06 -52.49 -0.42 1.28 16 36 H 0.42 6.33 7.87 -40.82 -0.32 6.01 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.07 0.94 6.70 -51.93 -0.35 0.60 16 39 H 0.06 0.71 6.75 -51.93 -0.35 0.36 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.71 6.38 -51.93 -0.33 0.37 16 42 H 0.06 0.96 6.44 -51.93 -0.33 0.63 16 43 H 0.09 1.91 5.82 -51.93 -0.30 1.61 16 44 H 0.02 0.29 6.28 -51.93 -0.33 -0.03 16 45 H 0.09 1.35 8.00 -51.93 -0.42 0.94 16 46 H 0.05 0.79 6.94 -51.93 -0.36 0.43 16 47 H 0.39 9.39 7.90 -40.82 -0.32 9.06 16 48 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 395.65 15.07 5.96 5.96 Total: -1.00 -34.23 395.65 -7.13 -41.36 By element: Atomic # 1 Polarization: 22.50 SS G_CDS: -7.14 Total: 15.36 kcal Atomic # 6 Polarization: 10.61 SS G_CDS: -0.68 Total: 9.93 kcal Atomic # 7 Polarization: -63.29 SS G_CDS: -0.42 Total: -63.72 kcal Atomic # 8 Polarization: -25.00 SS G_CDS: 0.17 Total: -24.83 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.23 -7.13 -41.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506014994.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.494 kcal (2) G-P(sol) polarization free energy of solvation -34.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds