Wall clock time and date at job start Tue Mar 31 2020 20:26:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 109.47101 * 2 1 4 4 C 1.35032 * 124.88635 * 125.00577 * 3 2 1 5 5 C 1.35367 * 107.22837 * 179.97438 * 4 3 2 6 6 C 1.41504 * 105.50330 * 0.26137 * 5 4 3 7 7 C 1.47705 * 126.51490 * 179.70452 * 6 5 4 8 8 O 1.21564 * 120.00576 * 359.97438 * 7 6 5 9 9 N 1.34783 * 119.99706 * 179.97438 * 7 6 5 10 10 C 1.46500 * 120.00007 * 179.97438 * 9 7 6 11 11 C 1.52997 * 109.47307 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.47580 * 64.99579 * 11 10 9 13 13 C 1.53002 * 109.47316 * 185.00266 * 11 10 9 14 14 N 1.46911 * 109.46910 * 304.99886 * 11 10 9 15 15 C 1.46900 * 110.99889 * 298.95730 * 14 11 10 16 16 C 1.46899 * 110.99897 * 174.99896 * 14 11 10 17 17 C 1.50701 * 109.46769 * 189.99988 * 16 14 11 18 18 O 1.21295 * 120.00206 * 0.02562 * 17 16 14 19 19 N 1.34776 * 119.99612 * 179.97438 * 17 16 14 20 20 C 1.37103 * 119.99859 * 180.02562 * 19 17 16 21 21 H 1.07997 * 119.99450 * 0.02562 * 20 19 17 22 22 C 1.38949 * 119.99929 * 180.02562 * 20 19 17 23 23 N 1.31410 * 119.99992 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99753 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47080 * 60.00183 * 24 22 20 26 26 H 1.48498 * 109.47066 * 179.97438 * 24 22 20 27 27 H 1.48499 * 109.46993 * 299.99843 * 24 22 20 28 28 N 1.28472 * 124.88099 * 304.97612 * 3 2 1 29 29 H 1.09002 * 109.47257 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47049 * 299.99963 * 1 2 3 31 31 H 1.08997 * 109.47366 * 59.99683 * 1 2 3 32 32 H 1.08997 * 109.46781 * 240.00005 * 2 1 3 33 33 H 1.08998 * 109.46921 * 120.00024 * 2 1 3 34 34 H 1.07999 * 126.38674 * 359.94633 * 4 3 2 35 35 H 1.08002 * 127.24456 * 179.97438 * 5 4 3 36 36 H 0.97003 * 120.00212 * 0.02562 * 9 7 6 37 37 H 1.09005 * 109.46817 * 299.99967 * 10 9 7 38 38 H 1.09002 * 109.47133 * 60.00013 * 10 9 7 39 39 H 1.08997 * 109.46803 * 179.97438 * 13 11 10 40 40 H 1.08995 * 109.46595 * 299.99516 * 13 11 10 41 41 H 1.08994 * 109.46781 * 59.99529 * 13 11 10 42 42 H 1.08999 * 109.47191 * 59.99927 * 15 14 11 43 43 H 1.08995 * 109.46760 * 179.97438 * 15 14 11 44 44 H 1.08999 * 109.46921 * 299.99416 * 15 14 11 45 45 H 1.08996 * 109.47160 * 310.00018 * 16 14 11 46 46 H 1.08997 * 109.47126 * 70.00399 * 16 14 11 47 47 H 0.97000 * 120.00102 * 0.02562 * 19 17 16 48 48 H 0.97000 * 119.99993 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8748 1.8976 0.9073 5 6 3.0832 3.1920 0.5706 6 6 2.2961 3.4139 -0.5842 7 6 2.1753 4.6798 -1.3356 8 8 2.7900 5.6635 -0.9721 9 7 1.3834 4.7442 -2.4244 10 6 1.2631 5.9999 -3.1694 11 6 0.3106 5.8030 -4.3504 12 1 -0.6916 5.5917 -3.9776 13 6 0.2812 7.0753 -5.1996 14 7 0.7751 4.6768 -5.1716 15 6 2.1157 4.9376 -5.7127 16 6 -0.1793 4.3820 -6.2488 17 6 0.1983 3.0828 -6.9127 18 8 1.1668 2.4633 -6.5262 19 7 -0.5408 2.6089 -7.9352 20 6 -0.1976 1.4267 -8.5388 21 1 0.6647 0.8752 -8.1947 22 6 -0.9593 0.9384 -9.5934 23 7 -2.0089 1.6094 -10.0117 24 14 -0.4913 -0.6719 -10.4163 25 1 -0.5222 -1.7673 -9.4140 26 1 -1.4564 -0.9704 -11.5048 27 1 0.8762 -0.5586 -10.9839 28 7 1.6936 2.2753 -0.8636 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.3118 1.3753 1.7455 35 1 3.7134 3.9065 1.0794 36 1 0.8926 3.9593 -2.7143 37 1 0.8709 6.7760 -2.5122 38 1 2.2441 6.2984 -3.5392 39 1 -0.3971 6.9348 -6.0412 40 1 -0.0634 7.9108 -4.5903 41 1 1.2834 7.2865 -5.5724 42 1 2.8170 5.0836 -4.8911 43 1 2.4354 4.0881 -6.3161 44 1 2.0895 5.8342 -6.3319 45 1 -1.1831 4.2988 -5.8322 46 1 -0.1566 5.1859 -6.9844 47 1 -1.3156 3.1042 -8.2440 48 1 -2.5405 1.2687 -10.7481 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506014994.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:11 Heat of formation + Delta-G solvation = -8.362373 kcal Electronic energy + Delta-G solvation = -29381.600226 eV Core-core repulsion = 25279.765145 eV Total energy + Delta-G solvation = -4101.835081 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.57378 -40.84779 -40.18039 -38.71387 -35.97427 -35.46016 -35.24926 -33.25184 -32.26629 -31.55577 -30.85447 -29.36729 -27.68158 -27.00909 -25.68130 -24.98389 -23.06372 -22.29988 -21.39008 -20.84124 -20.53235 -19.78701 -18.80994 -17.96985 -17.57784 -17.19762 -16.90399 -16.85454 -16.53262 -16.23282 -15.86739 -15.66963 -15.33221 -15.22373 -14.95028 -14.69837 -14.48851 -14.22389 -14.04764 -13.81517 -13.62849 -13.42905 -13.29001 -13.07114 -12.97802 -12.89121 -12.80258 -12.44230 -12.38843 -12.30465 -12.25667 -12.12036 -11.79974 -11.73582 -11.42285 -11.24757 -10.30176 -10.24984 -10.08422 -9.97009 -9.88598 -9.15332 -8.44326 -5.92416 0.58664 1.24771 1.39993 1.41476 1.52167 1.59685 2.10063 2.23949 2.30447 2.42812 2.78308 3.22925 3.39375 3.47185 3.73211 3.93338 3.99574 4.05296 4.07571 4.26574 4.29848 4.31398 4.35686 4.36489 4.54936 4.57403 4.63062 4.66627 4.73434 4.75087 4.81211 4.83435 4.86585 4.88804 5.02165 5.19736 5.22917 5.30708 5.39453 5.42761 5.48011 5.89767 5.95153 6.08450 6.21368 6.50034 6.64278 6.96581 7.16248 7.20869 7.60642 8.17326 8.72969 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009605 B = 0.003003 C = 0.002413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2914.506161 B = 9321.816843 C =11602.247586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.107 3.893 3 N -0.279 5.279 4 C 0.000 4.000 5 C -0.205 4.205 6 C -0.050 4.050 7 C 0.598 3.402 8 O -0.577 6.577 9 N -0.698 5.698 10 C 0.131 3.869 11 C 0.071 3.929 12 H 0.103 0.897 13 C -0.180 4.180 14 N -0.525 5.525 15 C 0.028 3.972 16 C 0.059 3.941 17 C 0.442 3.558 18 O -0.613 6.613 19 N -0.576 5.576 20 C -0.331 4.331 21 H 0.077 0.923 22 C -0.012 4.012 23 N -0.921 5.921 24 Si 0.990 3.010 25 H -0.272 1.272 26 H -0.271 1.271 27 H -0.273 1.273 28 N -0.278 5.278 29 H 0.102 0.898 30 H 0.062 0.938 31 H 0.044 0.956 32 H 0.093 0.907 33 H 0.148 0.852 34 H 0.229 0.771 35 H 0.166 0.834 36 H 0.414 0.586 37 H 0.085 0.915 38 H 0.061 0.939 39 H 0.067 0.933 40 H 0.085 0.915 41 H 0.059 0.941 42 H 0.063 0.937 43 H 0.053 0.947 44 H 0.039 0.961 45 H 0.111 0.889 46 H 0.071 0.929 47 H 0.395 0.605 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.609 2.724 20.552 20.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.011 4.011 3 N -0.069 5.069 4 C -0.143 4.143 5 C -0.233 4.233 6 C -0.209 4.209 7 C 0.384 3.616 8 O -0.456 6.456 9 N -0.348 5.348 10 C 0.007 3.993 11 C -0.038 4.038 12 H 0.121 0.879 13 C -0.239 4.239 14 N -0.249 5.249 15 C -0.120 4.120 16 C -0.072 4.072 17 C 0.230 3.770 18 O -0.499 6.499 19 N -0.213 5.213 20 C -0.460 4.460 21 H 0.095 0.905 22 C -0.212 4.212 23 N -0.563 5.563 24 Si 0.814 3.186 25 H -0.197 1.197 26 H -0.195 1.195 27 H -0.199 1.199 28 N -0.116 5.116 29 H 0.120 0.880 30 H 0.081 0.919 31 H 0.064 0.936 32 H 0.111 0.889 33 H 0.166 0.834 34 H 0.246 0.754 35 H 0.183 0.817 36 H 0.251 0.749 37 H 0.104 0.896 38 H 0.079 0.921 39 H 0.086 0.914 40 H 0.104 0.896 41 H 0.078 0.922 42 H 0.081 0.919 43 H 0.072 0.928 44 H 0.057 0.943 45 H 0.129 0.871 46 H 0.089 0.911 47 H 0.229 0.771 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.773 1.933 20.421 20.699 hybrid contribution 0.117 0.211 -1.062 1.089 sum 2.890 2.144 19.359 19.690 Atomic orbital electron populations 1.22045 0.93309 1.04454 1.02414 1.22435 0.96669 0.75099 1.06908 1.46107 1.31820 1.11094 1.17856 1.23535 0.97543 0.94560 0.98660 1.22007 1.05202 0.97727 0.98398 1.21983 1.04846 0.93107 1.00960 1.17173 0.78743 0.85722 0.80011 1.90718 1.48076 1.37010 1.69801 1.45776 1.46611 1.15393 1.26991 1.21517 0.99723 0.85802 0.92222 1.22091 0.99196 0.89812 0.92677 0.87941 1.22357 1.02823 0.97848 1.00921 1.61715 1.02080 1.39152 1.21950 1.22375 0.90354 0.99986 0.99321 1.21732 0.97643 0.93911 0.93937 1.20806 0.84871 0.89120 0.82217 1.90479 1.30820 1.62184 1.66406 1.41918 1.27641 1.21540 1.30230 1.19595 1.12474 0.99776 1.14198 0.90475 1.25983 0.95416 1.02539 0.97264 1.69663 1.17421 1.40663 1.28517 0.85037 0.78086 0.77676 0.77837 1.19706 1.19533 1.19869 1.73518 1.22968 0.98427 1.16638 0.87976 0.91895 0.93637 0.88920 0.83444 0.75434 0.81680 0.74902 0.89644 0.92114 0.91438 0.89605 0.92213 0.91868 0.92820 0.94308 0.87130 0.91140 0.77088 0.91384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.20 10.02 71.98 0.72 -1.48 16 2 C 0.11 1.29 7.12 86.38 0.61 1.91 16 3 N -0.28 -5.63 3.41 -347.96 -1.19 -6.82 16 4 C 0.00 0.00 11.40 83.54 0.95 0.95 16 5 C -0.21 -4.83 10.81 22.41 0.24 -4.59 16 6 C -0.05 -1.50 7.13 42.46 0.30 -1.20 16 7 C 0.60 19.52 7.82 86.74 0.68 20.20 16 8 O -0.58 -21.23 16.93 -3.92 -0.07 -21.30 16 9 N -0.70 -20.59 5.39 -466.10 -2.51 -23.11 16 10 C 0.13 3.28 4.68 86.38 0.40 3.69 16 11 C 0.07 1.63 2.50 44.91 0.11 1.74 16 12 H 0.10 2.14 8.03 -2.39 -0.02 2.12 16 13 C -0.18 -3.39 8.50 71.98 0.61 -2.78 16 14 N -0.52 -16.44 3.93 -901.61 -3.54 -19.98 16 15 C 0.03 0.92 8.46 127.69 1.08 2.00 16 16 C 0.06 1.97 4.89 85.56 0.42 2.39 16 17 C 0.44 20.82 7.47 87.66 0.66 21.48 16 18 O -0.61 -33.67 13.91 -3.08 -0.04 -33.72 16 19 N -0.58 -29.34 5.29 -306.98 -1.62 -30.96 16 20 C -0.33 -18.76 9.68 84.04 0.81 -17.94 16 21 H 0.08 4.67 7.16 -2.91 -0.02 4.65 16 22 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 23 N -0.92 -49.66 13.05 21.66 0.28 -49.38 16 24 Si 0.99 42.95 29.55 68.60 2.03 44.97 16 25 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 26 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 27 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 28 N -0.28 -7.91 11.36 -48.18 -0.55 -8.46 16 29 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 31 H 0.04 0.91 8.08 -2.39 -0.02 0.89 16 32 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.15 0.44 8.04 -2.39 -0.02 0.42 16 34 H 0.23 1.24 8.06 -2.91 -0.02 1.22 16 35 H 0.17 3.51 8.06 -2.91 -0.02 3.49 16 36 H 0.41 12.93 7.87 -92.71 -0.73 12.20 16 37 H 0.09 1.91 8.14 -2.38 -0.02 1.90 16 38 H 0.06 1.64 6.70 -2.39 -0.02 1.62 16 39 H 0.07 1.27 6.75 -2.39 -0.02 1.25 16 40 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.06 1.19 6.38 -2.39 -0.02 1.17 16 42 H 0.06 2.04 6.44 -2.39 -0.02 2.02 16 43 H 0.05 2.25 5.82 -2.39 -0.01 2.23 16 44 H 0.04 1.12 6.28 -2.39 -0.02 1.10 16 45 H 0.11 3.23 8.00 -2.39 -0.02 3.21 16 46 H 0.07 2.11 6.94 -2.39 -0.02 2.09 16 47 H 0.40 19.13 7.90 -92.71 -0.73 18.40 16 48 H 0.28 14.01 8.31 -92.71 -0.77 13.24 16 Total: -1.00 -78.01 395.65 0.41 -77.60 By element: Atomic # 1 Polarization: 45.44 SS G_CDS: -0.46 Total: 44.98 kcal Atomic # 6 Polarization: 18.09 SS G_CDS: 8.07 Total: 26.16 kcal Atomic # 7 Polarization: -129.57 SS G_CDS: -9.13 Total: -138.70 kcal Atomic # 8 Polarization: -54.91 SS G_CDS: -0.11 Total: -55.02 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.97 kcal Total: -78.01 0.41 -77.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506014994.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.239 kcal (2) G-P(sol) polarization free energy of solvation -78.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds