Wall clock time and date at job start Tue Mar 31 2020 20:26:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46494 * 109.47242 * 2 1 4 4 C 1.35037 * 124.88914 * 124.99476 * 3 2 1 5 5 C 1.35366 * 107.23222 * 179.76792 * 4 3 2 6 6 C 1.41506 * 105.50162 * 0.23033 * 5 4 3 7 7 C 1.47701 * 126.51923 * 179.97438 * 6 5 4 8 8 O 1.21579 * 120.00038 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00453 * 179.97438 * 7 6 5 10 10 C 1.46499 * 120.00566 * 179.97438 * 9 7 6 11 11 C 1.52998 * 109.47391 * 175.19129 * 10 9 7 12 12 H 1.09006 * 109.47168 * 295.31943 * 11 10 9 13 13 C 1.53005 * 109.47059 * 175.32269 * 11 10 9 14 14 N 1.46900 * 109.47105 * 55.32117 * 11 10 9 15 15 C 1.46898 * 110.99903 * 192.49568 * 14 11 10 16 16 C 1.46894 * 110.99891 * 68.53978 * 14 11 10 17 17 C 1.50704 * 109.46965 * 189.99991 * 16 14 11 18 18 O 1.21287 * 120.00175 * 0.02562 * 17 16 14 19 19 N 1.34776 * 119.99962 * 180.02562 * 17 16 14 20 20 C 1.37098 * 120.00246 * 179.97438 * 19 17 16 21 21 H 1.07998 * 119.99309 * 0.02562 * 20 19 17 22 22 C 1.38944 * 119.99952 * 179.97438 * 20 19 17 23 23 N 1.31407 * 120.00386 * 0.02562 * 22 20 19 24 24 Si 1.86806 * 119.99707 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.46947 * 90.00455 * 24 22 20 26 26 H 1.48496 * 109.47189 * 210.00233 * 24 22 20 27 27 H 1.48493 * 109.47098 * 330.00469 * 24 22 20 28 28 N 1.28478 * 124.88398 * 305.17789 * 3 2 1 29 29 H 1.08998 * 109.47250 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47506 * 300.00282 * 1 2 3 31 31 H 1.09004 * 109.46793 * 60.00613 * 1 2 3 32 32 H 1.08991 * 109.47245 * 239.99603 * 2 1 3 33 33 H 1.09004 * 109.46793 * 119.99387 * 2 1 3 34 34 H 1.07999 * 126.38225 * 0.03553 * 4 3 2 35 35 H 1.07995 * 127.25021 * 180.24825 * 5 4 3 36 36 H 0.97003 * 119.99610 * 0.02562 * 9 7 6 37 37 H 1.08997 * 109.47456 * 295.19912 * 10 9 7 38 38 H 1.09010 * 109.46859 * 55.19188 * 10 9 7 39 39 H 1.08993 * 109.46909 * 299.99637 * 13 11 10 40 40 H 1.08995 * 109.46911 * 59.99966 * 13 11 10 41 41 H 1.09000 * 109.46386 * 180.02562 * 13 11 10 42 42 H 1.09006 * 109.47199 * 53.76327 * 15 14 11 43 43 H 1.08996 * 109.47037 * 173.76158 * 15 14 11 44 44 H 1.08999 * 109.47169 * 293.76290 * 15 14 11 45 45 H 1.08999 * 109.47494 * 310.00069 * 16 14 11 46 46 H 1.08999 * 109.47239 * 70.00508 * 16 14 11 47 47 H 0.97000 * 120.00042 * 359.97438 * 19 17 16 48 48 H 0.97003 * 120.00162 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8747 1.8976 0.9074 5 6 3.0867 3.1908 0.5680 6 6 2.3026 3.4116 -0.5890 7 6 2.1905 4.6743 -1.3470 8 8 2.8108 5.6562 -0.9876 9 7 1.4005 4.7381 -2.4371 10 6 1.2889 5.9907 -3.1887 11 6 0.4336 5.7624 -4.4365 12 1 0.9417 5.0650 -5.1027 13 6 0.2199 7.0940 -5.1591 14 7 -0.8671 5.2044 -4.0432 15 6 -1.5979 4.6979 -5.2125 16 6 -1.6663 6.1967 -3.3122 17 6 -2.8768 5.5260 -2.7156 18 8 -3.0558 4.3381 -2.8825 19 7 -3.7604 6.2461 -1.9965 20 6 -4.8619 5.6361 -1.4542 21 1 -5.0212 4.5783 -1.6028 22 6 -5.7725 6.3785 -0.7124 23 7 -5.5783 7.6654 -0.5312 24 14 -7.2737 5.5473 0.0260 25 1 -6.9461 5.0525 1.3872 26 1 -8.3892 6.5239 0.1095 27 1 -7.6790 4.4050 -0.8318 28 7 1.6908 2.2763 -0.8614 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.3126 1.3750 1.7450 35 1 3.7210 3.9037 1.0737 36 1 0.9053 3.9548 -2.7237 37 1 0.8216 6.7502 -2.5618 38 1 2.2827 6.3260 -3.4857 39 1 -0.2881 7.7913 -4.4930 40 1 1.1851 7.5080 -5.4508 41 1 -0.3898 6.9313 -6.0478 42 1 -0.9681 3.9952 -5.7583 43 1 -2.5053 4.1919 -4.8827 44 1 -1.8626 5.5305 -5.8643 45 1 -1.0635 6.6336 -2.5160 46 1 -1.9867 6.9814 -3.9976 47 1 -3.6170 7.1961 -1.8627 48 1 -6.2143 8.1838 -0.0137 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001506014995.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:14 Heat of formation + Delta-G solvation = 17.583017 kcal Electronic energy + Delta-G solvation = -29760.609160 eV Core-core repulsion = 25659.899155 eV Total energy + Delta-G solvation = -4100.710005 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.64489 -39.53459 -38.62472 -37.13590 -34.67079 -34.23082 -33.73056 -31.21693 -31.15344 -30.58244 -29.97217 -28.00775 -26.72572 -25.03915 -24.47697 -23.66066 -22.10980 -21.39980 -20.38027 -19.66778 -18.84404 -17.90313 -17.69755 -16.66699 -16.53192 -16.07438 -15.85844 -15.22231 -14.75162 -14.73535 -14.49417 -14.41367 -14.02688 -13.91674 -13.64819 -13.54866 -13.42556 -13.12658 -12.73830 -12.63518 -12.48029 -12.29042 -12.20799 -11.99063 -11.74974 -11.61219 -11.44688 -11.20044 -11.10855 -10.83742 -10.81980 -10.69914 -10.37806 -10.18695 -9.96759 -9.44011 -9.29017 -9.09386 -8.76842 -8.41581 -7.93952 -7.80327 -6.37992 -3.78576 1.67641 2.13580 2.37351 3.19359 3.27567 3.32818 3.37506 3.62345 3.95317 4.03537 4.20135 4.27587 4.64949 4.68642 4.77294 4.78877 4.86791 5.02391 5.16126 5.24156 5.26535 5.32081 5.40833 5.53676 5.55818 5.57319 5.61758 5.68626 5.75584 5.82604 5.85755 5.93406 6.00466 6.00578 6.06999 6.20345 6.33147 6.39322 6.56644 6.65917 6.72100 7.28669 7.39488 7.58260 7.69966 8.00622 8.10177 8.44728 8.66149 9.22007 9.59108 10.11159 10.79912 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.008098 B = 0.003586 C = 0.002876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3456.724160 B = 7807.112950 C = 9733.204016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.118 3.882 3 N -0.282 5.282 4 C -0.024 4.024 5 C -0.181 4.181 6 C -0.016 4.016 7 C 0.603 3.397 8 O -0.546 6.546 9 N -0.699 5.699 10 C 0.129 3.871 11 C 0.065 3.935 12 H 0.088 0.912 13 C -0.185 4.185 14 N -0.511 5.511 15 C 0.022 3.978 16 C 0.042 3.958 17 C 0.446 3.554 18 O -0.578 6.578 19 N -0.565 5.565 20 C -0.297 4.297 21 H 0.102 0.898 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.928 3.072 25 H -0.279 1.279 26 H -0.284 1.284 27 H -0.270 1.270 28 N -0.249 5.249 29 H 0.078 0.922 30 H 0.064 0.936 31 H 0.079 0.921 32 H 0.092 0.908 33 H 0.101 0.899 34 H 0.180 0.820 35 H 0.160 0.840 36 H 0.418 0.582 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.065 0.935 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.057 0.943 43 H 0.097 0.903 44 H 0.017 0.983 45 H 0.087 0.913 46 H 0.051 0.949 47 H 0.391 0.609 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.570 -10.019 -2.674 19.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.001 4.001 3 N -0.071 5.071 4 C -0.167 4.167 5 C -0.209 4.209 6 C -0.177 4.177 7 C 0.387 3.613 8 O -0.422 6.422 9 N -0.351 5.351 10 C 0.004 3.996 11 C -0.045 4.045 12 H 0.107 0.893 13 C -0.244 4.244 14 N -0.234 5.234 15 C -0.125 4.125 16 C -0.090 4.090 17 C 0.232 3.768 18 O -0.462 6.462 19 N -0.202 5.202 20 C -0.427 4.427 21 H 0.120 0.880 22 C -0.179 4.179 23 N -0.543 5.543 24 Si 0.756 3.244 25 H -0.205 1.205 26 H -0.210 1.210 27 H -0.195 1.195 28 N -0.085 5.085 29 H 0.097 0.903 30 H 0.083 0.917 31 H 0.098 0.902 32 H 0.110 0.890 33 H 0.119 0.881 34 H 0.197 0.803 35 H 0.178 0.822 36 H 0.255 0.745 37 H 0.086 0.914 38 H 0.091 0.909 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.076 0.924 43 H 0.115 0.885 44 H 0.036 0.964 45 H 0.105 0.895 46 H 0.069 0.931 47 H 0.224 0.776 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 16.048 -11.004 -2.885 19.671 hybrid contribution -0.564 0.952 0.546 1.233 sum 15.485 -10.052 -2.339 18.609 Atomic orbital electron populations 1.22100 0.92640 1.03403 1.04685 1.22007 0.97074 0.76642 1.04414 1.45665 1.32158 1.10398 1.18906 1.22842 0.99533 0.95608 0.98694 1.21750 1.04717 0.96026 0.98406 1.21939 1.02543 0.93353 0.99837 1.16888 0.79224 0.85376 0.79823 1.90766 1.46971 1.35852 1.68617 1.45676 1.46474 1.15281 1.27671 1.21430 0.99334 0.86593 0.92194 1.22048 0.91438 0.95789 0.95208 0.89347 1.22403 1.02538 0.98221 1.01236 1.61773 1.02533 1.35166 1.23960 1.22541 1.00620 0.98678 0.90696 1.21936 0.95235 0.93556 0.98227 1.19736 0.85055 0.87889 0.84165 1.90467 1.77035 1.15303 1.63368 1.41861 1.21170 1.11091 1.46086 1.19669 0.98839 0.95761 1.28406 0.88007 1.25239 0.99539 0.95463 0.97696 1.69612 1.37730 1.06057 1.40939 0.85885 0.80480 0.78744 0.79329 1.20471 1.20959 1.19473 1.73547 1.20951 0.98099 1.15883 0.90318 0.91697 0.90166 0.88970 0.88095 0.80330 0.82217 0.74524 0.91401 0.90896 0.91619 0.91868 0.91913 0.92372 0.88476 0.96438 0.89450 0.93100 0.77561 0.91924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.50 10.01 37.16 0.37 -1.13 16 2 C 0.12 0.86 7.12 -4.05 -0.03 0.84 16 3 N -0.28 -3.18 3.41 -61.34 -0.21 -3.39 16 4 C -0.02 -0.25 11.40 -17.17 -0.20 -0.44 16 5 C -0.18 -2.34 10.81 -39.36 -0.43 -2.77 16 6 C -0.02 -0.26 7.13 -82.77 -0.59 -0.85 16 7 C 0.60 10.13 7.82 -12.39 -0.10 10.04 16 8 O -0.55 -10.36 16.92 5.30 0.09 -10.27 16 9 N -0.70 -10.68 5.41 -61.29 -0.33 -11.01 16 10 C 0.13 1.75 4.94 -4.04 -0.02 1.73 16 11 C 0.06 0.80 2.47 -67.71 -0.17 0.63 16 12 H 0.09 0.99 7.93 -51.93 -0.41 0.58 16 13 C -0.18 -1.99 8.42 37.16 0.31 -1.68 16 14 N -0.51 -8.09 3.82 -236.33 -0.90 -9.00 16 15 C 0.02 0.34 8.90 60.06 0.53 0.88 16 16 C 0.04 0.75 4.31 -4.98 -0.02 0.73 16 17 C 0.45 10.55 7.52 -10.98 -0.08 10.46 16 18 O -0.58 -15.30 13.88 5.55 0.08 -15.22 16 19 N -0.57 -14.52 5.29 -10.97 -0.06 -14.58 16 20 C -0.30 -8.35 9.68 -14.94 -0.14 -8.49 16 21 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 22 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 23 N -0.90 -24.91 13.05 55.50 0.72 -24.19 16 24 Si 0.93 21.27 29.55 -169.99 -5.02 16.25 16 25 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 26 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 27 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 28 N -0.25 -3.63 11.35 33.42 0.38 -3.25 16 29 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.08 0.93 8.08 -51.93 -0.42 0.51 16 32 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.10 0.41 8.04 -51.93 -0.42 -0.01 16 34 H 0.18 1.04 8.06 -52.49 -0.42 0.62 16 35 H 0.16 1.87 8.06 -52.49 -0.42 1.44 16 36 H 0.42 6.53 7.80 -40.82 -0.32 6.21 16 37 H 0.07 1.00 6.65 -51.93 -0.35 0.66 16 38 H 0.07 0.91 8.14 -51.92 -0.42 0.48 16 39 H 0.06 0.75 6.54 -51.93 -0.34 0.41 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.06 0.67 6.92 -51.93 -0.36 0.31 16 42 H 0.06 0.76 7.98 -51.93 -0.41 0.35 16 43 H 0.10 1.86 5.92 -51.93 -0.31 1.55 16 44 H 0.02 0.25 6.96 -51.93 -0.36 -0.12 16 45 H 0.09 1.53 6.30 -51.93 -0.33 1.20 16 46 H 0.05 0.84 6.81 -51.93 -0.35 0.49 16 47 H 0.39 9.73 7.90 -40.82 -0.32 9.41 16 48 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 396.18 15.07 5.97 5.97 Total: -1.00 -34.73 396.18 -7.10 -41.83 By element: Atomic # 1 Polarization: 23.58 SS G_CDS: -7.17 Total: 16.42 kcal Atomic # 6 Polarization: 11.09 SS G_CDS: -0.65 Total: 10.44 kcal Atomic # 7 Polarization: -65.01 SS G_CDS: -0.40 Total: -65.40 kcal Atomic # 8 Polarization: -25.66 SS G_CDS: 0.17 Total: -25.50 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.73 -7.10 -41.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506014995.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.411 kcal (2) G-P(sol) polarization free energy of solvation -34.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds