Wall clock time and date at job start Tue Mar 31 2020 20:26:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46494 * 109.47242 * 2 1 4 4 C 1.35037 * 124.88914 * 124.99476 * 3 2 1 5 5 C 1.35366 * 107.23222 * 179.76792 * 4 3 2 6 6 C 1.41506 * 105.50162 * 0.23033 * 5 4 3 7 7 C 1.47701 * 126.51923 * 179.97438 * 6 5 4 8 8 O 1.21579 * 120.00038 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00453 * 179.97438 * 7 6 5 10 10 C 1.46499 * 120.00566 * 179.97438 * 9 7 6 11 11 C 1.52998 * 109.47391 * 175.19129 * 10 9 7 12 12 H 1.09006 * 109.47168 * 295.31943 * 11 10 9 13 13 C 1.53005 * 109.47059 * 175.32269 * 11 10 9 14 14 N 1.46900 * 109.47105 * 55.32117 * 11 10 9 15 15 C 1.46898 * 110.99903 * 192.49568 * 14 11 10 16 16 C 1.46894 * 110.99891 * 68.53978 * 14 11 10 17 17 C 1.50704 * 109.46965 * 189.99991 * 16 14 11 18 18 O 1.21287 * 120.00175 * 0.02562 * 17 16 14 19 19 N 1.34776 * 119.99962 * 180.02562 * 17 16 14 20 20 C 1.37098 * 120.00246 * 179.97438 * 19 17 16 21 21 H 1.07998 * 119.99309 * 0.02562 * 20 19 17 22 22 C 1.38944 * 119.99952 * 179.97438 * 20 19 17 23 23 N 1.31407 * 120.00386 * 0.02562 * 22 20 19 24 24 Si 1.86806 * 119.99707 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.46947 * 90.00455 * 24 22 20 26 26 H 1.48496 * 109.47189 * 210.00233 * 24 22 20 27 27 H 1.48493 * 109.47098 * 330.00469 * 24 22 20 28 28 N 1.28478 * 124.88398 * 305.17789 * 3 2 1 29 29 H 1.08998 * 109.47250 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47506 * 300.00282 * 1 2 3 31 31 H 1.09004 * 109.46793 * 60.00613 * 1 2 3 32 32 H 1.08991 * 109.47245 * 239.99603 * 2 1 3 33 33 H 1.09004 * 109.46793 * 119.99387 * 2 1 3 34 34 H 1.07999 * 126.38225 * 0.03553 * 4 3 2 35 35 H 1.07995 * 127.25021 * 180.24825 * 5 4 3 36 36 H 0.97003 * 119.99610 * 0.02562 * 9 7 6 37 37 H 1.08997 * 109.47456 * 295.19912 * 10 9 7 38 38 H 1.09010 * 109.46859 * 55.19188 * 10 9 7 39 39 H 1.08993 * 109.46909 * 299.99637 * 13 11 10 40 40 H 1.08995 * 109.46911 * 59.99966 * 13 11 10 41 41 H 1.09000 * 109.46386 * 180.02562 * 13 11 10 42 42 H 1.09006 * 109.47199 * 53.76327 * 15 14 11 43 43 H 1.08996 * 109.47037 * 173.76158 * 15 14 11 44 44 H 1.08999 * 109.47169 * 293.76290 * 15 14 11 45 45 H 1.08999 * 109.47494 * 310.00069 * 16 14 11 46 46 H 1.08999 * 109.47239 * 70.00508 * 16 14 11 47 47 H 0.97000 * 120.00042 * 359.97438 * 19 17 16 48 48 H 0.97003 * 120.00162 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8747 1.8976 0.9074 5 6 3.0867 3.1908 0.5680 6 6 2.3026 3.4116 -0.5890 7 6 2.1905 4.6743 -1.3470 8 8 2.8108 5.6562 -0.9876 9 7 1.4005 4.7381 -2.4371 10 6 1.2889 5.9907 -3.1887 11 6 0.4336 5.7624 -4.4365 12 1 0.9417 5.0650 -5.1027 13 6 0.2199 7.0940 -5.1591 14 7 -0.8671 5.2044 -4.0432 15 6 -1.5979 4.6979 -5.2125 16 6 -1.6663 6.1967 -3.3122 17 6 -2.8768 5.5260 -2.7156 18 8 -3.0558 4.3381 -2.8825 19 7 -3.7604 6.2461 -1.9965 20 6 -4.8619 5.6361 -1.4542 21 1 -5.0212 4.5783 -1.6028 22 6 -5.7725 6.3785 -0.7124 23 7 -5.5783 7.6654 -0.5312 24 14 -7.2737 5.5473 0.0260 25 1 -6.9461 5.0525 1.3872 26 1 -8.3892 6.5239 0.1095 27 1 -7.6790 4.4050 -0.8318 28 7 1.6908 2.2763 -0.8614 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.3126 1.3750 1.7450 35 1 3.7210 3.9037 1.0737 36 1 0.9053 3.9548 -2.7237 37 1 0.8216 6.7502 -2.5618 38 1 2.2827 6.3260 -3.4857 39 1 -0.2881 7.7913 -4.4930 40 1 1.1851 7.5080 -5.4508 41 1 -0.3898 6.9313 -6.0478 42 1 -0.9681 3.9952 -5.7583 43 1 -2.5053 4.1919 -4.8827 44 1 -1.8626 5.5305 -5.8643 45 1 -1.0635 6.6336 -2.5160 46 1 -1.9867 6.9814 -3.9976 47 1 -3.6170 7.1961 -1.8627 48 1 -6.2143 8.1838 -0.0137 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506014995.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:14 Heat of formation + Delta-G solvation = -9.480405 kcal Electronic energy + Delta-G solvation = -29761.782718 eV Core-core repulsion = 25659.899155 eV Total energy + Delta-G solvation = -4101.883563 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.57107 -40.87451 -40.16878 -38.67748 -35.98874 -35.46571 -35.27249 -33.27018 -32.26141 -31.55332 -30.86130 -29.55297 -27.75113 -26.76139 -25.66657 -24.86719 -23.05457 -22.30022 -21.83592 -20.83043 -20.44561 -19.73035 -18.79295 -18.15619 -17.56195 -17.11494 -17.04003 -16.74772 -16.47126 -15.99085 -15.95134 -15.52005 -15.47821 -15.24185 -14.99167 -14.77683 -14.52356 -14.09616 -14.03354 -13.85282 -13.66123 -13.47371 -13.27519 -13.06502 -13.02156 -12.98277 -12.83285 -12.46645 -12.40168 -12.31780 -12.16676 -12.13017 -11.81252 -11.75422 -11.44667 -11.25169 -10.30422 -10.26211 -10.08210 -9.99455 -9.88264 -9.16471 -8.45954 -5.94554 0.58262 1.24135 1.36675 1.39537 1.52638 1.60535 2.06761 2.23003 2.29553 2.43133 2.79976 3.20848 3.37867 3.42355 3.76369 3.92303 3.99633 4.04233 4.05008 4.22060 4.29264 4.30319 4.35959 4.37002 4.50639 4.58670 4.64755 4.67685 4.73409 4.74329 4.80012 4.82834 4.87471 4.90378 5.01387 5.24255 5.24488 5.28264 5.38934 5.40755 5.47769 5.88745 5.95481 6.07855 6.21954 6.50766 6.61272 6.96483 7.13697 7.21134 7.57392 8.13346 8.71767 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.008098 B = 0.003586 C = 0.002876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3456.724160 B = 7807.112950 C = 9733.204016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.112 3.888 3 N -0.280 5.280 4 C 0.000 4.000 5 C -0.207 4.207 6 C -0.051 4.051 7 C 0.595 3.405 8 O -0.578 6.578 9 N -0.697 5.697 10 C 0.127 3.873 11 C 0.073 3.927 12 H 0.109 0.891 13 C -0.180 4.180 14 N -0.526 5.526 15 C 0.028 3.972 16 C 0.058 3.942 17 C 0.443 3.557 18 O -0.609 6.609 19 N -0.578 5.578 20 C -0.330 4.330 21 H 0.079 0.921 22 C -0.014 4.014 23 N -0.923 5.923 24 Si 0.992 3.008 25 H -0.273 1.273 26 H -0.270 1.270 27 H -0.271 1.271 28 N -0.276 5.276 29 H 0.106 0.894 30 H 0.048 0.952 31 H 0.042 0.958 32 H 0.107 0.893 33 H 0.147 0.853 34 H 0.230 0.770 35 H 0.164 0.836 36 H 0.415 0.585 37 H 0.053 0.947 38 H 0.088 0.912 39 H 0.057 0.943 40 H 0.085 0.915 41 H 0.068 0.932 42 H 0.083 0.917 43 H 0.055 0.945 44 H 0.032 0.968 45 H 0.092 0.908 46 H 0.071 0.929 47 H 0.393 0.607 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.597 -11.251 -2.518 21.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.006 4.006 3 N -0.069 5.069 4 C -0.143 4.143 5 C -0.235 4.235 6 C -0.210 4.210 7 C 0.381 3.619 8 O -0.457 6.457 9 N -0.347 5.347 10 C 0.003 3.997 11 C -0.035 4.035 12 H 0.127 0.873 13 C -0.239 4.239 14 N -0.250 5.250 15 C -0.119 4.119 16 C -0.073 4.073 17 C 0.230 3.770 18 O -0.495 6.495 19 N -0.215 5.215 20 C -0.459 4.459 21 H 0.097 0.903 22 C -0.214 4.214 23 N -0.564 5.564 24 Si 0.816 3.184 25 H -0.199 1.199 26 H -0.195 1.195 27 H -0.195 1.195 28 N -0.113 5.113 29 H 0.124 0.876 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.126 0.874 33 H 0.164 0.836 34 H 0.246 0.754 35 H 0.182 0.818 36 H 0.252 0.748 37 H 0.071 0.929 38 H 0.106 0.894 39 H 0.076 0.924 40 H 0.104 0.896 41 H 0.087 0.913 42 H 0.102 0.898 43 H 0.074 0.926 44 H 0.051 0.949 45 H 0.110 0.890 46 H 0.089 0.911 47 H 0.227 0.773 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 17.079 -12.229 -2.762 21.187 hybrid contribution -0.836 1.224 0.488 1.561 sum 16.243 -11.005 -2.275 19.751 Atomic orbital electron populations 1.22068 0.94179 1.04373 1.01996 1.22436 0.95747 0.74973 1.07446 1.46139 1.31542 1.11105 1.18129 1.23528 0.97570 0.94583 0.98605 1.22012 1.05417 0.97783 0.98296 1.21971 1.04399 0.93352 1.01253 1.17223 0.78903 0.85750 0.80021 1.90723 1.48376 1.37046 1.69545 1.45740 1.45808 1.15668 1.27442 1.21560 1.00271 0.85612 0.92273 1.22081 0.89148 0.97304 0.94959 0.87318 1.22363 1.03897 0.96757 1.00886 1.61682 1.03478 1.35247 1.24631 1.22417 0.99437 0.99429 0.90654 1.21724 0.92982 0.93802 0.98811 1.20754 0.85792 0.87622 0.82784 1.90448 1.77980 1.16945 1.64081 1.41952 1.21420 1.11236 1.46912 1.19642 1.00708 0.95191 1.30396 0.90290 1.26034 1.01856 0.96059 0.97431 1.69682 1.38690 1.06933 1.41105 0.84945 0.77168 0.77930 0.78404 1.19861 1.19498 1.19540 1.73487 1.21756 0.98573 1.17513 0.87553 0.93287 0.93849 0.87447 0.83560 0.75373 0.81831 0.74824 0.92865 0.89416 0.92444 0.89577 0.91313 0.89832 0.92621 0.94910 0.88993 0.91081 0.77338 0.91399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.83 10.01 71.98 0.72 -2.11 16 2 C 0.11 1.34 7.12 86.38 0.61 1.95 16 3 N -0.28 -5.87 3.41 -347.97 -1.19 -7.06 16 4 C 0.00 0.00 11.40 83.54 0.95 0.95 16 5 C -0.21 -5.28 10.81 22.41 0.24 -5.04 16 6 C -0.05 -1.63 7.13 42.46 0.30 -1.32 16 7 C 0.60 20.79 7.82 86.74 0.68 21.46 16 8 O -0.58 -22.75 16.92 -3.97 -0.07 -22.82 16 9 N -0.70 -21.74 5.41 -466.10 -2.52 -24.26 16 10 C 0.13 3.38 4.94 86.38 0.43 3.81 16 11 C 0.07 1.70 2.47 44.92 0.11 1.82 16 12 H 0.11 2.15 7.93 -2.38 -0.02 2.13 16 13 C -0.18 -3.44 8.42 71.98 0.61 -2.83 16 14 N -0.53 -16.44 3.82 -901.62 -3.45 -19.89 16 15 C 0.03 0.85 8.90 127.69 1.14 1.99 16 16 C 0.06 2.09 4.31 85.56 0.37 2.46 16 17 C 0.44 21.64 7.52 87.66 0.66 22.30 16 18 O -0.61 -33.63 13.88 -3.05 -0.04 -33.67 16 19 N -0.58 -30.69 5.29 -306.99 -1.62 -32.31 16 20 C -0.33 -19.16 9.68 84.04 0.81 -18.34 16 21 H 0.08 4.86 7.16 -2.91 -0.02 4.84 16 22 C -0.01 -0.79 5.50 84.93 0.47 -0.32 16 23 N -0.92 -51.26 13.05 21.66 0.28 -50.97 16 24 Si 0.99 43.82 29.55 68.60 2.03 45.85 16 25 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 26 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 27 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 28 N -0.28 -8.13 11.35 -48.18 -0.55 -8.68 16 29 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.04 1.04 8.08 -2.38 -0.02 1.02 16 32 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.15 0.47 8.04 -2.38 -0.02 0.45 16 34 H 0.23 1.54 8.06 -2.91 -0.02 1.52 16 35 H 0.16 3.85 8.06 -2.91 -0.02 3.83 16 36 H 0.42 13.35 7.80 -92.71 -0.72 12.63 16 37 H 0.05 1.59 6.65 -2.39 -0.02 1.57 16 38 H 0.09 2.10 8.14 -2.38 -0.02 2.08 16 39 H 0.06 1.21 6.54 -2.39 -0.02 1.19 16 40 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.07 1.26 6.92 -2.39 -0.02 1.25 16 42 H 0.08 2.06 7.98 -2.38 -0.02 2.04 16 43 H 0.06 2.17 5.92 -2.39 -0.01 2.16 16 44 H 0.03 0.88 6.96 -2.39 -0.02 0.86 16 45 H 0.09 3.26 6.30 -2.39 -0.02 3.24 16 46 H 0.07 2.29 6.81 -2.39 -0.02 2.28 16 47 H 0.39 20.16 7.90 -92.71 -0.73 19.42 16 48 H 0.28 14.39 8.31 -92.71 -0.77 13.62 16 Total: -1.00 -79.93 396.18 0.52 -79.41 By element: Atomic # 1 Polarization: 48.10 SS G_CDS: -0.46 Total: 47.64 kcal Atomic # 6 Polarization: 18.66 SS G_CDS: 8.10 Total: 26.76 kcal Atomic # 7 Polarization: -134.13 SS G_CDS: -9.04 Total: -143.17 kcal Atomic # 8 Polarization: -56.39 SS G_CDS: -0.11 Total: -56.50 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -79.93 0.52 -79.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506014995.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.932 kcal (2) G-P(sol) polarization free energy of solvation -79.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds