Wall clock time and date at job start Tue Mar 31 2020 20:08:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08993 * 109.46530 * 2 1 4 4 C 1.53005 * 109.46943 * 240.00332 * 2 1 3 5 5 N 1.46497 * 109.46581 * 184.99665 * 4 2 1 6 6 C 1.34779 * 119.99630 * 179.97438 * 5 4 2 7 7 O 1.21593 * 120.00312 * 0.02562 * 6 5 4 8 8 C 1.47524 * 119.99954 * 180.02562 * 6 5 4 9 9 C 1.36595 * 125.77390 * 179.97438 * 8 6 5 10 10 N 1.34804 * 106.84322 * 179.97438 * 9 8 6 11 11 C 1.46499 * 126.59661 * 179.97438 * 10 9 8 12 12 C 1.53000 * 109.47660 * 124.99852 * 11 10 9 13 13 H 1.09003 * 110.43163 * 305.70238 * 12 11 10 14 14 C 1.54808 * 110.48927 * 183.15534 * 12 11 10 15 15 C 1.55229 * 101.98803 * 220.51730 * 14 12 11 16 16 O 1.44386 * 103.56471 * 36.88147 * 15 14 12 17 17 C 1.43741 * 106.97512 * 320.01333 * 16 15 14 18 18 N 1.40209 * 106.81421 * 0.02562 * 10 9 8 19 19 N 1.28762 * 108.36433 * 359.74661 * 18 10 9 20 20 N 1.46497 * 109.46977 * 120.00111 * 2 1 3 21 21 C 1.46501 * 120.00111 * 60.00457 * 20 2 1 22 22 C 1.36939 * 119.99712 * 239.99851 * 20 2 1 23 23 H 1.07996 * 120.00018 * 336.23655 * 22 20 2 24 24 C 1.38808 * 119.99633 * 156.24110 * 22 20 2 25 25 N 1.31623 * 119.99928 * 330.08682 * 24 22 20 26 26 Si 1.86803 * 120.00049 * 150.36742 * 24 22 20 27 27 H 1.48494 * 109.47145 * 179.72195 * 26 24 22 28 28 H 1.48496 * 109.47027 * 299.72243 * 26 24 22 29 29 H 1.48501 * 109.46727 * 59.72195 * 26 24 22 30 30 H 1.08993 * 109.47456 * 299.99900 * 1 2 3 31 31 H 1.09003 * 109.47445 * 59.99902 * 1 2 3 32 32 H 1.09001 * 109.47101 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.46978 * 305.00059 * 4 2 1 34 34 H 1.09000 * 109.46921 * 65.00003 * 4 2 1 35 35 H 0.97000 * 120.00514 * 0.02562 * 5 4 2 36 36 H 1.08001 * 126.57682 * 0.02562 * 9 8 6 37 37 H 1.09004 * 109.47357 * 244.99754 * 11 10 9 38 38 H 1.09004 * 109.47407 * 4.99843 * 11 10 9 39 39 H 1.09001 * 110.91221 * 338.64202 * 14 12 11 40 40 H 1.09003 * 110.90527 * 102.24895 * 14 12 11 41 41 H 1.09000 * 110.51978 * 278.39116 * 15 14 12 42 42 H 1.08994 * 110.78009 * 155.50163 * 15 14 12 43 43 H 1.08997 * 109.88191 * 267.08799 * 17 16 15 44 44 H 1.08998 * 110.00347 * 146.00642 * 17 16 15 45 45 H 1.09001 * 109.46663 * 272.97055 * 21 20 2 46 46 H 1.08997 * 109.46982 * 32.96914 * 21 20 2 47 47 H 1.08995 * 109.46907 * 152.97197 * 21 20 2 48 48 H 0.96998 * 120.00196 * 354.91870 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5000 -0.8262 -1.1906 6 6 4.1730 -1.4290 -2.1908 7 8 3.5684 -1.8852 -3.1420 8 6 5.6432 -1.5353 -2.1315 9 6 6.4403 -2.1194 -3.0745 10 7 7.7106 -2.0030 -2.6387 11 6 8.9151 -2.4843 -3.3196 12 6 9.8977 -1.3252 -3.4982 13 1 9.4141 -0.4913 -4.0070 14 6 11.1466 -1.7901 -4.2861 15 6 12.2931 -1.0689 -3.5278 16 8 11.8707 -1.1192 -2.1480 17 6 10.4543 -0.8748 -2.1336 18 7 7.6574 -1.3337 -1.4078 19 7 6.4254 -1.0693 -1.1428 20 7 2.0183 -0.6906 1.1961 21 6 1.6645 -2.0932 1.4279 22 6 2.8056 -0.0251 2.0975 23 1 3.3784 0.8346 1.7828 24 6 2.8674 -0.4556 3.4157 25 7 1.8293 -1.0520 3.9626 26 14 4.4211 -0.1816 4.4159 27 1 4.2301 -0.7230 5.7854 28 1 5.5592 -0.8771 3.7630 29 1 4.7092 1.2731 4.4943 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6054 -1.7197 -1.2953 34 1 1.7516 -0.1582 -2.1370 35 1 3.9824 -0.4627 -0.4316 36 1 6.1151 -2.5845 -3.9934 37 1 9.3819 -3.2674 -2.7221 38 1 8.6447 -2.8851 -4.2965 39 1 11.2627 -2.8723 -4.2280 40 1 11.0966 -1.4607 -5.3240 41 1 12.3831 -0.0360 -3.8642 42 1 13.2368 -1.5980 -3.6599 43 1 10.2631 0.1883 -1.9880 44 1 9.9851 -1.4485 -1.3343 45 1 0.7108 -2.1453 1.9532 46 1 1.5813 -2.6097 0.4717 47 1 2.4380 -2.5681 2.0313 48 1 0.9968 -1.1250 3.4701 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001506031052.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:22 Heat of formation + Delta-G solvation = 37.317194 kcal Electronic energy + Delta-G solvation = -29472.117259 eV Core-core repulsion = 25372.262992 eV Total energy + Delta-G solvation = -4099.854267 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.27515 -39.88784 -39.05022 -36.83051 -35.55855 -33.92581 -32.64546 -32.02813 -30.96432 -29.77219 -29.15077 -27.02643 -26.11676 -25.93532 -23.41522 -23.12685 -22.59354 -22.17513 -21.18997 -20.05374 -19.44860 -17.97711 -17.40495 -17.02351 -16.69177 -16.10812 -15.88553 -15.74018 -15.35787 -15.12706 -14.73093 -14.30323 -14.19331 -13.92870 -13.66529 -13.56439 -13.43085 -13.10576 -12.77061 -12.41493 -12.18317 -12.10177 -12.06528 -11.87466 -11.67439 -11.55292 -11.38706 -11.24132 -11.12912 -10.72281 -10.64241 -10.48999 -10.47986 -10.17184 -10.04309 -9.93790 -9.84475 -9.40321 -9.33094 -8.54431 -8.28386 -6.92009 -6.03750 -3.15691 1.05635 1.81865 1.83824 3.47902 3.49649 3.55847 3.56429 3.62924 3.78343 3.81698 3.87318 4.11574 4.27691 4.46246 4.58419 4.63806 4.65722 4.71944 4.75600 4.97821 5.02011 5.13466 5.23442 5.26489 5.28416 5.35155 5.41860 5.48462 5.55512 5.64091 5.81782 5.88126 6.03394 6.11664 6.19699 6.23770 6.35488 6.45923 6.58753 6.72286 6.81387 6.90944 7.02270 7.17184 7.82798 8.02486 8.10911 8.54683 8.62135 9.15061 9.89306 10.28136 11.25024 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.012618 B = 0.002858 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2218.527891 B = 9794.342708 C =11590.137029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.157 3.843 3 H 0.071 0.929 4 C 0.107 3.893 5 N -0.687 5.687 6 C 0.596 3.404 7 O -0.559 6.559 8 C -0.092 4.092 9 C 0.088 3.912 10 N -0.368 5.368 11 C 0.131 3.869 12 C -0.137 4.137 13 H 0.092 0.908 14 C -0.147 4.147 15 C 0.045 3.955 16 O -0.376 6.376 17 C 0.051 3.949 18 N -0.066 5.066 19 N -0.190 5.190 20 N -0.594 5.594 21 C 0.137 3.863 22 C -0.361 4.361 23 H 0.059 0.941 24 C -0.016 4.016 25 N -0.910 5.910 26 Si 1.056 2.944 27 H -0.288 1.288 28 H -0.291 1.291 29 H -0.293 1.293 30 H 0.058 0.942 31 H 0.044 0.956 32 H 0.048 0.952 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.420 0.580 36 H 0.203 0.797 37 H 0.103 0.897 38 H 0.108 0.892 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.061 0.939 42 H 0.095 0.905 43 H 0.064 0.936 44 H 0.102 0.898 45 H 0.009 0.991 46 H 0.015 0.985 47 H 0.050 0.950 48 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.951 -2.500 -20.319 25.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.049 3.951 3 H 0.089 0.911 4 C -0.019 4.019 5 N -0.337 5.337 6 C 0.379 3.621 7 O -0.438 6.438 8 C -0.232 4.232 9 C -0.068 4.068 10 N -0.153 5.153 11 C 0.010 3.990 12 C -0.156 4.156 13 H 0.111 0.889 14 C -0.185 4.185 15 C -0.031 4.031 16 O -0.295 6.295 17 C -0.026 4.026 18 N -0.046 5.046 19 N -0.063 5.063 20 N -0.318 5.318 21 C -0.008 4.008 22 C -0.490 4.490 23 H 0.077 0.923 24 C -0.220 4.220 25 N -0.549 5.549 26 Si 0.886 3.114 27 H -0.214 1.214 28 H -0.218 1.218 29 H -0.220 1.220 30 H 0.077 0.923 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.258 0.742 36 H 0.219 0.781 37 H 0.121 0.879 38 H 0.127 0.873 39 H 0.102 0.898 40 H 0.105 0.895 41 H 0.079 0.921 42 H 0.113 0.887 43 H 0.082 0.918 44 H 0.120 0.880 45 H 0.027 0.973 46 H 0.033 0.967 47 H 0.068 0.932 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 17.203 -2.594 -18.115 25.116 hybrid contribution -1.219 0.057 -2.216 2.530 sum 15.984 -2.536 -20.331 25.986 Atomic orbital electron populations 1.22198 0.97545 1.01238 1.00763 1.20645 0.92354 0.95788 0.86350 0.91068 1.21973 0.79165 1.01316 0.99396 1.45751 1.08319 1.56806 1.22810 1.16782 0.83719 0.78564 0.82990 1.90754 1.68642 1.50206 1.34182 1.21606 0.96321 1.10170 0.95072 1.23316 0.83544 0.99165 1.00795 1.50539 1.06606 1.40966 1.17238 1.22110 0.82157 0.96867 0.97867 1.22901 0.96240 0.98205 0.98298 0.88918 1.23202 0.93361 1.02006 0.99919 1.23586 0.97817 0.99923 0.81811 1.88929 1.22451 1.93033 1.25099 1.23356 0.80912 1.01631 0.96700 1.81969 1.12898 1.13907 0.95842 1.74784 0.97405 1.13251 1.20900 1.44013 1.58757 1.06852 1.22168 1.20893 0.98532 0.84934 0.96479 1.19909 1.21817 1.15900 0.91354 0.92276 1.25696 1.02734 0.99578 0.93958 1.70793 1.01502 1.44933 1.37667 0.83667 0.75807 0.75909 0.76065 1.21371 1.21774 1.21989 0.92284 0.93719 0.93274 0.91993 0.92134 0.74184 0.78054 0.87907 0.87348 0.89766 0.89496 0.92067 0.88685 0.91786 0.87989 0.97311 0.96675 0.93167 0.91922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.80 9.19 37.16 0.34 -2.46 16 2 C 0.16 3.11 2.87 -67.93 -0.20 2.91 16 3 H 0.07 1.44 7.87 -51.93 -0.41 1.03 16 4 C 0.11 1.94 4.91 -4.04 -0.02 1.92 16 5 N -0.69 -12.82 5.38 -61.35 -0.33 -13.15 16 6 C 0.60 10.60 7.82 -12.47 -0.10 10.50 16 7 O -0.56 -10.66 16.86 5.28 0.09 -10.57 16 8 C -0.09 -1.44 6.99 -83.55 -0.58 -2.02 16 9 C 0.09 0.99 11.27 -16.84 -0.19 0.80 16 10 N -0.37 -3.82 3.69 -61.06 -0.23 -4.04 16 11 C 0.13 0.77 5.70 -4.04 -0.02 0.75 16 12 C -0.14 -0.84 3.27 -89.09 -0.29 -1.14 16 13 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 14 C -0.15 -0.60 6.73 -24.60 -0.17 -0.76 16 15 C 0.05 0.27 7.72 38.34 0.30 0.57 16 16 O -0.38 -3.75 11.52 -35.23 -0.41 -4.16 16 17 C 0.05 0.47 6.60 37.73 0.25 0.72 16 18 N -0.07 -0.95 11.63 60.35 0.70 -0.25 16 19 N -0.19 -3.22 12.04 32.85 0.40 -2.83 16 20 N -0.59 -14.16 2.16 -173.49 -0.37 -14.54 16 21 C 0.14 3.25 8.06 59.85 0.48 3.73 16 22 C -0.36 -9.71 9.12 -15.06 -0.14 -9.85 16 23 H 0.06 1.59 7.95 -52.49 -0.42 1.18 16 24 C -0.02 -0.46 4.60 -17.43 -0.08 -0.54 16 25 N -0.91 -27.16 12.75 55.49 0.71 -26.45 16 26 Si 1.06 25.62 30.01 -169.99 -5.10 20.52 16 27 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 28 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 29 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 30 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 31 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.05 0.87 7.67 -51.93 -0.40 0.47 16 33 H 0.06 1.17 6.90 -51.93 -0.36 0.81 16 34 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.42 8.47 7.58 -40.82 -0.31 8.16 16 36 H 0.20 1.56 8.06 -52.49 -0.42 1.14 16 37 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.11 0.29 8.08 -51.93 -0.42 -0.13 16 39 H 0.08 0.27 7.87 -51.93 -0.41 -0.14 16 40 H 0.09 0.22 8.14 -51.93 -0.42 -0.21 16 41 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 43 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.10 1.10 6.37 -51.93 -0.33 0.77 16 45 H 0.01 0.22 6.87 -51.93 -0.36 -0.14 16 46 H 0.01 0.32 6.54 -51.93 -0.34 -0.02 16 47 H 0.05 1.31 7.28 -51.93 -0.38 0.93 16 48 H 0.27 8.09 6.39 -40.82 -0.26 7.83 16 LS Contribution 390.94 15.07 5.89 5.89 Total: -1.00 -34.04 390.94 -6.48 -40.51 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -7.41 Total: 3.93 kcal Atomic # 6 Polarization: 5.54 SS G_CDS: -0.41 Total: 5.13 kcal Atomic # 7 Polarization: -62.13 SS G_CDS: 0.87 Total: -61.26 kcal Atomic # 8 Polarization: -14.41 SS G_CDS: -0.32 Total: -14.72 kcal Atomic # 14 Polarization: 25.62 SS G_CDS: -5.10 Total: 20.52 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.04 -6.48 -40.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506031052.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.832 kcal (2) G-P(sol) polarization free energy of solvation -34.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds