Wall clock time and date at job start Tue Mar 31 2020 20:08:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08993 * 109.46530 * 2 1 4 4 C 1.53005 * 109.46943 * 240.00332 * 2 1 3 5 5 N 1.46497 * 109.46581 * 184.99665 * 4 2 1 6 6 C 1.34779 * 119.99630 * 179.97438 * 5 4 2 7 7 O 1.21593 * 120.00312 * 0.02562 * 6 5 4 8 8 C 1.47524 * 119.99954 * 180.02562 * 6 5 4 9 9 C 1.36595 * 125.77390 * 179.97438 * 8 6 5 10 10 N 1.34804 * 106.84322 * 179.97438 * 9 8 6 11 11 C 1.46499 * 126.59661 * 179.97438 * 10 9 8 12 12 C 1.53000 * 109.47660 * 124.99852 * 11 10 9 13 13 H 1.09003 * 110.43163 * 305.70238 * 12 11 10 14 14 C 1.54808 * 110.48927 * 183.15534 * 12 11 10 15 15 C 1.55229 * 101.98803 * 220.51730 * 14 12 11 16 16 O 1.44386 * 103.56471 * 36.88147 * 15 14 12 17 17 C 1.43741 * 106.97512 * 320.01333 * 16 15 14 18 18 N 1.40209 * 106.81421 * 0.02562 * 10 9 8 19 19 N 1.28762 * 108.36433 * 359.74661 * 18 10 9 20 20 N 1.46497 * 109.46977 * 120.00111 * 2 1 3 21 21 C 1.46501 * 120.00111 * 60.00457 * 20 2 1 22 22 C 1.36939 * 119.99712 * 239.99851 * 20 2 1 23 23 H 1.07996 * 120.00018 * 336.23655 * 22 20 2 24 24 C 1.38808 * 119.99633 * 156.24110 * 22 20 2 25 25 N 1.31623 * 119.99928 * 330.08682 * 24 22 20 26 26 Si 1.86803 * 120.00049 * 150.36742 * 24 22 20 27 27 H 1.48494 * 109.47145 * 179.72195 * 26 24 22 28 28 H 1.48496 * 109.47027 * 299.72243 * 26 24 22 29 29 H 1.48501 * 109.46727 * 59.72195 * 26 24 22 30 30 H 1.08993 * 109.47456 * 299.99900 * 1 2 3 31 31 H 1.09003 * 109.47445 * 59.99902 * 1 2 3 32 32 H 1.09001 * 109.47101 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.46978 * 305.00059 * 4 2 1 34 34 H 1.09000 * 109.46921 * 65.00003 * 4 2 1 35 35 H 0.97000 * 120.00514 * 0.02562 * 5 4 2 36 36 H 1.08001 * 126.57682 * 0.02562 * 9 8 6 37 37 H 1.09004 * 109.47357 * 244.99754 * 11 10 9 38 38 H 1.09004 * 109.47407 * 4.99843 * 11 10 9 39 39 H 1.09001 * 110.91221 * 338.64202 * 14 12 11 40 40 H 1.09003 * 110.90527 * 102.24895 * 14 12 11 41 41 H 1.09000 * 110.51978 * 278.39116 * 15 14 12 42 42 H 1.08994 * 110.78009 * 155.50163 * 15 14 12 43 43 H 1.08997 * 109.88191 * 267.08799 * 17 16 15 44 44 H 1.08998 * 110.00347 * 146.00642 * 17 16 15 45 45 H 1.09001 * 109.46663 * 272.97055 * 21 20 2 46 46 H 1.08997 * 109.46982 * 32.96914 * 21 20 2 47 47 H 1.08995 * 109.46907 * 152.97197 * 21 20 2 48 48 H 0.96998 * 120.00196 * 354.91870 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5000 -0.8262 -1.1906 6 6 4.1730 -1.4290 -2.1908 7 8 3.5684 -1.8852 -3.1420 8 6 5.6432 -1.5353 -2.1315 9 6 6.4403 -2.1194 -3.0745 10 7 7.7106 -2.0030 -2.6387 11 6 8.9151 -2.4843 -3.3196 12 6 9.8977 -1.3252 -3.4982 13 1 9.4141 -0.4913 -4.0070 14 6 11.1466 -1.7901 -4.2861 15 6 12.2931 -1.0689 -3.5278 16 8 11.8707 -1.1192 -2.1480 17 6 10.4543 -0.8748 -2.1336 18 7 7.6574 -1.3337 -1.4078 19 7 6.4254 -1.0693 -1.1428 20 7 2.0183 -0.6906 1.1961 21 6 1.6645 -2.0932 1.4279 22 6 2.8056 -0.0251 2.0975 23 1 3.3784 0.8346 1.7828 24 6 2.8674 -0.4556 3.4157 25 7 1.8293 -1.0520 3.9626 26 14 4.4211 -0.1816 4.4159 27 1 4.2301 -0.7230 5.7854 28 1 5.5592 -0.8771 3.7630 29 1 4.7092 1.2731 4.4943 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6054 -1.7197 -1.2953 34 1 1.7516 -0.1582 -2.1370 35 1 3.9824 -0.4627 -0.4316 36 1 6.1151 -2.5845 -3.9934 37 1 9.3819 -3.2674 -2.7221 38 1 8.6447 -2.8851 -4.2965 39 1 11.2627 -2.8723 -4.2280 40 1 11.0966 -1.4607 -5.3240 41 1 12.3831 -0.0360 -3.8642 42 1 13.2368 -1.5980 -3.6599 43 1 10.2631 0.1883 -1.9880 44 1 9.9851 -1.4485 -1.3343 45 1 0.7108 -2.1453 1.9532 46 1 1.5813 -2.6097 0.4717 47 1 2.4380 -2.5681 2.0313 48 1 0.9968 -1.1250 3.4701 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506031052.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:21 Heat of formation + Delta-G solvation = 12.470575 kcal Electronic energy + Delta-G solvation = -29473.194689 eV Core-core repulsion = 25372.262992 eV Total energy + Delta-G solvation = -4100.931697 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.26779 -40.60279 -40.31945 -38.55346 -36.32535 -35.59700 -33.82534 -33.28823 -31.99445 -31.04288 -30.33396 -28.13112 -27.83507 -27.19187 -24.82395 -24.14591 -23.93873 -22.91233 -21.86840 -21.26365 -21.03270 -19.49836 -18.98570 -17.62481 -17.37920 -17.15317 -17.09922 -16.93295 -16.63019 -16.00271 -15.81438 -15.71165 -15.64711 -15.38890 -15.22892 -14.66032 -14.40763 -14.18981 -13.85258 -13.77723 -13.64146 -13.18357 -13.15904 -12.89468 -12.71229 -12.68736 -12.49592 -12.44093 -12.37475 -12.35572 -11.97617 -11.91653 -11.82332 -11.79733 -11.42035 -11.30579 -11.21330 -10.69118 -10.41835 -10.39103 -9.94651 -8.95592 -8.21537 -5.30115 0.14434 0.62962 1.08022 1.59383 1.66930 1.84275 2.20834 2.28899 2.66599 2.95467 3.20359 3.24267 3.25475 3.40096 3.51949 3.69305 3.77437 3.92138 3.96119 3.98821 4.15999 4.23399 4.28206 4.31778 4.45690 4.48243 4.50083 4.57812 4.66450 4.68783 4.78457 4.82378 4.84534 4.90325 4.92210 4.96531 4.98145 5.11898 5.13750 5.22145 5.33802 5.44423 5.52265 5.88812 5.89913 6.44447 6.50354 6.92367 7.08441 7.16712 7.82319 8.22184 9.05540 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.012618 B = 0.002858 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2218.527891 B = 9794.342708 C =11590.137029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.155 3.845 3 H 0.066 0.934 4 C 0.117 3.883 5 N -0.698 5.698 6 C 0.598 3.402 7 O -0.574 6.574 8 C -0.127 4.127 9 C 0.118 3.882 10 N -0.350 5.350 11 C 0.121 3.879 12 C -0.130 4.130 13 H 0.093 0.907 14 C -0.132 4.132 15 C 0.033 3.967 16 O -0.406 6.406 17 C 0.048 3.952 18 N -0.088 5.088 19 N -0.231 5.231 20 N -0.604 5.604 21 C 0.153 3.847 22 C -0.351 4.351 23 H 0.056 0.944 24 C -0.068 4.068 25 N -0.940 5.940 26 Si 1.100 2.900 27 H -0.296 1.296 28 H -0.288 1.288 29 H -0.276 1.276 30 H 0.038 0.962 31 H 0.081 0.919 32 H 0.049 0.951 33 H 0.056 0.944 34 H 0.082 0.918 35 H 0.411 0.589 36 H 0.245 0.755 37 H 0.111 0.889 38 H 0.157 0.843 39 H 0.100 0.900 40 H 0.112 0.888 41 H 0.063 0.937 42 H 0.110 0.890 43 H 0.045 0.955 44 H 0.081 0.919 45 H -0.004 1.004 46 H 0.039 0.961 47 H 0.019 0.981 48 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.227 -3.205 -23.788 29.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.048 3.952 3 H 0.084 0.916 4 C -0.008 4.008 5 N -0.346 5.346 6 C 0.384 3.616 7 O -0.454 6.454 8 C -0.267 4.267 9 C -0.040 4.040 10 N -0.135 5.135 11 C 0.002 3.998 12 C -0.149 4.149 13 H 0.112 0.888 14 C -0.170 4.170 15 C -0.043 4.043 16 O -0.326 6.326 17 C -0.029 4.029 18 N -0.069 5.069 19 N -0.104 5.104 20 N -0.328 5.328 21 C 0.008 3.992 22 C -0.481 4.481 23 H 0.074 0.926 24 C -0.266 4.266 25 N -0.583 5.583 26 Si 0.926 3.074 27 H -0.222 1.222 28 H -0.215 1.215 29 H -0.202 1.202 30 H 0.057 0.943 31 H 0.100 0.900 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.100 0.900 35 H 0.247 0.753 36 H 0.261 0.739 37 H 0.129 0.871 38 H 0.175 0.825 39 H 0.118 0.882 40 H 0.130 0.870 41 H 0.081 0.919 42 H 0.128 0.872 43 H 0.063 0.937 44 H 0.099 0.901 45 H 0.014 0.986 46 H 0.057 0.943 47 H 0.038 0.962 48 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 18.510 -3.281 -21.627 28.655 hybrid contribution -1.491 0.282 -1.293 1.994 sum 17.018 -2.998 -22.920 28.704 Atomic orbital electron populations 1.22067 0.95605 1.01535 1.01556 1.20811 0.93768 0.95325 0.85304 0.91580 1.21833 0.79133 1.00911 0.98918 1.45831 1.08442 1.57426 1.22943 1.17010 0.84703 0.77662 0.82266 1.90728 1.69335 1.50845 1.34495 1.21552 0.95516 1.12884 0.96766 1.23847 0.82906 0.96698 1.00574 1.50841 1.07806 1.39004 1.15832 1.22661 0.80525 0.96736 0.99842 1.22844 0.97136 0.98465 0.96499 0.88839 1.23193 0.90683 1.02729 1.00415 1.23874 0.99342 1.00803 0.80283 1.88896 1.22708 1.93093 1.27861 1.23281 0.81137 1.00240 0.98269 1.81902 1.11954 1.15066 0.97932 1.74758 0.98425 1.14786 1.22426 1.44124 1.59013 1.07024 1.22672 1.20650 0.96674 0.85087 0.96832 1.20099 1.21207 1.15188 0.91575 0.92616 1.26757 1.04271 1.00047 0.95496 1.70899 1.01691 1.47662 1.37999 0.83038 0.73161 0.76701 0.74460 1.22184 1.21473 1.20163 0.94289 0.90049 0.93232 0.92546 0.90007 0.75252 0.73944 0.87078 0.82535 0.88160 0.86983 0.91869 0.87241 0.93685 0.90089 0.98576 0.94300 0.96248 0.93294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.07 9.19 71.98 0.66 -4.40 16 2 C 0.15 6.03 2.87 44.99 0.13 6.15 16 3 H 0.07 2.64 7.87 -2.39 -0.02 2.62 16 4 C 0.12 4.09 4.91 86.38 0.42 4.52 16 5 N -0.70 -25.80 5.38 -466.28 -2.51 -28.31 16 6 C 0.60 20.73 7.82 86.69 0.68 21.41 16 7 O -0.57 -20.84 16.86 -4.01 -0.07 -20.91 16 8 C -0.13 -3.84 6.99 40.82 0.29 -3.56 16 9 C 0.12 2.30 11.27 83.85 0.95 3.25 16 10 N -0.35 -6.42 3.69 -347.10 -1.28 -7.70 16 11 C 0.12 0.97 5.70 86.38 0.49 1.46 16 12 C -0.13 -1.26 3.27 -9.80 -0.03 -1.30 16 13 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 14 C -0.13 -0.59 6.73 31.98 0.22 -0.37 16 15 C 0.03 0.33 7.72 72.75 0.56 0.89 16 16 O -0.41 -7.97 11.52 -148.98 -1.72 -9.69 16 17 C 0.05 0.88 6.60 72.36 0.48 1.36 16 18 N -0.09 -2.54 11.63 37.02 0.43 -2.11 16 19 N -0.23 -7.91 12.04 -49.99 -0.60 -8.51 16 20 N -0.60 -29.12 2.16 -702.80 -1.52 -30.63 16 21 C 0.15 7.40 8.06 127.77 1.03 8.43 16 22 C -0.35 -19.18 9.12 84.03 0.77 -18.42 16 23 H 0.06 3.05 7.95 -2.91 -0.02 3.02 16 24 C -0.07 -3.89 4.60 84.86 0.39 -3.50 16 25 N -0.94 -57.71 12.75 21.65 0.28 -57.43 16 26 Si 1.10 52.95 30.01 68.60 2.06 55.01 16 27 H -0.30 -14.51 7.11 99.48 0.71 -13.81 16 28 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 29 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 30 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 32 H 0.05 1.68 7.67 -2.39 -0.02 1.66 16 33 H 0.06 2.04 6.90 -2.39 -0.02 2.02 16 34 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 35 H 0.41 16.82 7.58 -92.71 -0.70 16.12 16 36 H 0.24 2.54 8.06 -2.91 -0.02 2.51 16 37 H 0.11 0.82 8.14 -2.38 -0.02 0.80 16 38 H 0.16 -0.14 8.08 -2.38 -0.02 -0.16 16 39 H 0.10 0.17 7.87 -2.39 -0.02 0.15 16 40 H 0.11 0.01 8.14 -2.39 -0.02 -0.01 16 41 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 42 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 43 H 0.04 0.95 8.14 -2.39 -0.02 0.94 16 44 H 0.08 1.81 6.37 -2.39 -0.02 1.79 16 45 H 0.00 -0.19 6.87 -2.39 -0.02 -0.21 16 46 H 0.04 1.66 6.54 -2.39 -0.02 1.64 16 47 H 0.02 1.02 7.28 -2.39 -0.02 1.00 16 48 H 0.26 15.94 6.39 -92.71 -0.59 15.35 16 Total: -1.00 -77.68 390.94 2.54 -75.14 By element: Atomic # 1 Polarization: 18.79 SS G_CDS: 0.45 Total: 19.23 kcal Atomic # 6 Polarization: 8.89 SS G_CDS: 7.03 Total: 15.92 kcal Atomic # 7 Polarization: -129.49 SS G_CDS: -5.20 Total: -134.69 kcal Atomic # 8 Polarization: -28.82 SS G_CDS: -1.78 Total: -30.60 kcal Atomic # 14 Polarization: 52.95 SS G_CDS: 2.06 Total: 55.01 kcal Total: -77.68 2.54 -75.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506031052.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.608 kcal (2) G-P(sol) polarization free energy of solvation -77.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds