Wall clock time and date at job start Tue Mar 31 2020 20:08:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.47172 * 2 1 4 4 C 1.53001 * 109.47165 * 120.00320 * 2 1 3 5 5 N 1.46506 * 109.47090 * 174.99955 * 4 2 1 6 6 C 1.34776 * 119.99860 * 179.97438 * 5 4 2 7 7 O 1.21593 * 119.99882 * 0.02562 * 6 5 4 8 8 C 1.47523 * 119.99846 * 179.72410 * 6 5 4 9 9 C 1.36597 * 125.77211 * 179.97438 * 8 6 5 10 10 N 1.34818 * 106.83929 * 179.83922 * 9 8 6 11 11 C 1.46501 * 126.59140 * 180.14967 * 10 9 8 12 12 C 1.52997 * 109.46678 * 125.29230 * 11 10 9 13 13 H 1.09003 * 110.45981 * 52.39373 * 12 11 10 14 14 C 1.54509 * 110.50990 * 175.00103 * 12 11 10 15 15 C 1.54478 * 104.06576 * 118.64319 * 14 12 11 16 16 O 1.44426 * 104.80226 * 23.97781 * 15 14 12 17 17 C 1.44422 * 105.27313 * 319.48939 * 16 15 14 18 18 N 1.40205 * 106.80966 * 0.41256 * 10 9 8 19 19 N 1.28766 * 108.37200 * 359.73681 * 18 10 9 20 20 N 1.46500 * 109.47076 * 240.00040 * 2 1 3 21 21 C 1.46505 * 119.99976 * 300.00155 * 20 2 1 22 22 C 1.36933 * 120.00171 * 119.99886 * 20 2 1 23 23 H 1.08003 * 120.00089 * 22.82161 * 22 20 2 24 24 C 1.38813 * 120.00459 * 202.82318 * 22 20 2 25 25 N 1.31621 * 119.99506 * 11.58463 * 24 22 20 26 26 Si 1.86794 * 120.00225 * 191.58499 * 24 22 20 27 27 H 1.48507 * 109.47133 * 60.00064 * 26 24 22 28 28 H 1.48502 * 109.47370 * 179.97438 * 26 24 22 29 29 H 1.48497 * 109.47676 * 300.00187 * 26 24 22 30 30 H 1.09001 * 109.46793 * 299.99874 * 1 2 3 31 31 H 1.08997 * 109.47461 * 60.00081 * 1 2 3 32 32 H 1.09005 * 109.47172 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47725 * 54.99845 * 4 2 1 34 34 H 1.08999 * 109.46777 * 294.99775 * 4 2 1 35 35 H 0.97003 * 119.99775 * 359.97438 * 5 4 2 36 36 H 1.07997 * 126.57572 * 0.02562 * 9 8 6 37 37 H 1.08995 * 109.46976 * 245.28562 * 11 10 9 38 38 H 1.08992 * 109.47103 * 5.29409 * 11 10 9 39 39 H 1.09003 * 110.50763 * 237.28707 * 14 12 11 40 40 H 1.08994 * 110.51026 * 359.97438 * 14 12 11 41 41 H 1.09001 * 110.37414 * 142.81008 * 15 14 12 42 42 H 1.09000 * 110.37036 * 265.14487 * 15 14 12 43 43 H 1.08999 * 110.36986 * 281.67700 * 17 16 15 44 44 H 1.09004 * 110.36942 * 159.34389 * 17 16 15 45 45 H 1.08997 * 109.47189 * 93.85091 * 21 20 2 46 46 H 1.09000 * 109.46597 * 213.85001 * 21 20 2 47 47 H 1.08994 * 109.46756 * 333.84686 * 21 20 2 48 48 H 0.96997 * 119.99730 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5001 -0.8265 1.1905 6 6 4.1731 -1.4284 2.1911 7 8 3.5685 -1.8846 3.1422 8 6 5.6429 -1.5397 2.1291 9 6 6.4400 -2.1227 3.0727 10 7 7.7095 -2.0157 2.6317 11 6 8.9136 -2.5020 3.3100 12 6 9.6962 -3.4170 2.3661 13 1 9.8739 -2.9189 1.4130 14 6 11.0336 -3.8440 3.0114 15 6 10.9281 -5.3820 3.1113 16 8 9.9755 -5.7535 2.0913 17 6 8.9410 -4.7475 2.1524 18 7 7.6564 -1.3442 1.4020 19 7 6.4244 -1.0793 1.1372 20 7 2.0183 -0.6906 -1.1962 21 6 1.6644 -2.0932 -1.4280 22 6 2.8055 -0.0252 -2.0976 23 1 3.3666 0.8437 -1.7865 24 6 2.8826 -0.4672 -3.4112 25 7 2.0365 -1.3746 -3.8508 26 14 4.1868 0.2257 -4.5549 27 1 5.5343 -0.0609 -4.0004 28 1 4.0581 -0.4059 -5.8928 29 1 4.0055 1.6941 -4.6807 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 1.6054 -1.7199 1.2952 34 1 1.7517 -0.1584 2.1369 35 1 3.9824 -0.4628 0.4315 36 1 6.1153 -2.5839 3.9937 37 1 9.5374 -1.6547 3.5947 38 1 8.6280 -3.0591 4.2022 39 1 11.8723 -3.5592 2.3762 40 1 11.1373 -3.4029 4.0027 41 1 11.8959 -5.8424 2.9124 42 1 10.5631 -5.6741 4.0959 43 1 8.2712 -4.9425 2.9899 44 1 8.3822 -4.7206 1.2169 45 1 0.7756 -2.1445 -2.0570 46 1 2.4915 -2.5991 -1.9260 47 1 1.4627 -2.5795 -0.4737 48 1 2.0901 -1.6833 -4.7687 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001506031053.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:25 Heat of formation + Delta-G solvation = 39.367054 kcal Electronic energy + Delta-G solvation = -29492.356395 eV Core-core repulsion = 25392.591018 eV Total energy + Delta-G solvation = -4099.765378 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.24135 -39.94328 -38.99098 -36.64051 -35.56603 -33.73594 -32.63316 -31.93687 -30.86780 -29.82765 -29.21955 -27.02192 -25.94644 -25.79558 -23.59983 -23.26601 -22.72480 -22.21217 -21.10969 -19.89550 -19.29547 -18.05379 -16.99230 -16.82816 -16.53120 -15.98414 -15.93496 -15.70122 -15.55156 -15.22487 -14.66341 -14.59958 -14.17243 -13.85620 -13.76871 -13.48376 -13.16827 -12.69543 -12.68144 -12.38799 -12.22832 -12.13694 -11.97744 -11.90756 -11.67597 -11.37937 -11.31054 -11.11177 -10.98760 -10.73920 -10.66661 -10.43743 -10.34544 -10.27232 -10.22683 -9.82417 -9.78921 -9.71730 -9.29535 -8.50962 -8.45293 -6.72591 -5.67013 -3.13937 1.08349 1.85574 1.86230 3.41333 3.44972 3.49985 3.52395 3.54068 3.61534 3.84681 3.95361 4.22099 4.27306 4.35643 4.50513 4.54476 4.68031 4.77627 4.79286 4.82007 5.03390 5.09566 5.21500 5.29984 5.34505 5.42264 5.43979 5.49482 5.57778 5.64463 5.83752 5.98263 6.14187 6.21922 6.24160 6.28946 6.35326 6.48363 6.80922 6.90464 6.91791 7.07300 7.46864 7.78987 7.86137 7.87155 8.15287 8.44327 8.61040 9.28710 9.91344 10.40169 11.37609 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011764 B = 0.002895 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2379.652288 B = 9668.227709 C =11056.704218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.157 3.843 3 H 0.069 0.931 4 C 0.106 3.894 5 N -0.686 5.686 6 C 0.596 3.404 7 O -0.558 6.558 8 C -0.091 4.091 9 C 0.085 3.915 10 N -0.368 5.368 11 C 0.133 3.867 12 C -0.139 4.139 13 H 0.105 0.895 14 C -0.146 4.146 15 C 0.042 3.958 16 O -0.370 6.370 17 C 0.049 3.951 18 N -0.064 5.064 19 N -0.191 5.191 20 N -0.593 5.593 21 C 0.166 3.834 22 C -0.258 4.258 23 H 0.069 0.931 24 C 0.006 3.994 25 N -0.906 5.906 26 Si 0.902 3.098 27 H -0.282 1.282 28 H -0.292 1.292 29 H -0.284 1.284 30 H 0.041 0.959 31 H 0.059 0.941 32 H 0.049 0.951 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.419 0.581 36 H 0.202 0.798 37 H 0.102 0.898 38 H 0.106 0.894 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.094 0.906 42 H 0.061 0.939 43 H 0.062 0.938 44 H 0.095 0.905 45 H 0.027 0.973 46 H 0.042 0.958 47 H -0.003 1.003 48 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.386 -4.276 18.705 24.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.048 3.952 3 H 0.087 0.913 4 C -0.020 4.020 5 N -0.336 5.336 6 C 0.379 3.621 7 O -0.438 6.438 8 C -0.230 4.230 9 C -0.071 4.071 10 N -0.153 5.153 11 C 0.012 3.988 12 C -0.158 4.158 13 H 0.124 0.876 14 C -0.185 4.185 15 C -0.035 4.035 16 O -0.289 6.289 17 C -0.028 4.028 18 N -0.045 5.045 19 N -0.065 5.065 20 N -0.316 5.316 21 C 0.021 3.979 22 C -0.387 4.387 23 H 0.086 0.914 24 C -0.193 4.193 25 N -0.551 5.551 26 Si 0.732 3.268 27 H -0.208 1.208 28 H -0.218 1.218 29 H -0.210 1.210 30 H 0.060 0.940 31 H 0.078 0.922 32 H 0.068 0.932 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.257 0.743 36 H 0.219 0.781 37 H 0.120 0.880 38 H 0.124 0.876 39 H 0.103 0.897 40 H 0.101 0.899 41 H 0.112 0.888 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.114 0.886 45 H 0.045 0.955 46 H 0.061 0.939 47 H 0.015 0.985 48 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 15.778 -4.319 17.857 24.217 hybrid contribution 0.410 0.207 -0.096 0.469 sum 16.187 -4.113 17.761 24.380 Atomic orbital electron populations 1.22181 0.97421 1.01362 1.00564 1.20622 0.92595 0.95598 0.86382 0.91282 1.22033 0.79005 1.01497 0.99472 1.45747 1.08407 1.56787 1.22652 1.16772 0.83669 0.78621 0.83047 1.90754 1.68598 1.50190 1.34213 1.21626 0.96388 1.10212 0.94763 1.23316 0.83549 0.99410 1.00812 1.50517 1.06641 1.40660 1.17502 1.22088 0.83363 0.98922 0.94464 1.22928 0.95226 0.96788 1.00864 0.87635 1.22954 0.96953 0.96599 1.01953 1.23457 0.94089 0.93786 0.92156 1.89195 1.34918 1.48605 1.56146 1.23517 0.90770 0.85487 1.02996 1.82023 1.12932 1.13536 0.95965 1.74786 0.97397 1.13375 1.20927 1.43960 1.58117 1.08043 1.21478 1.20722 0.99816 0.83383 0.93935 1.19157 1.18885 1.11360 0.89300 0.91372 1.25001 0.98345 0.99289 0.96641 1.70063 1.36178 1.33137 1.15711 0.86376 0.81949 0.78432 0.80052 1.20791 1.21818 1.21020 0.93988 0.92184 0.93158 0.91839 0.92219 0.74332 0.78098 0.87962 0.87608 0.89661 0.89868 0.88771 0.92042 0.92019 0.88634 0.95462 0.93879 0.98488 0.93795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.78 9.19 37.16 0.34 -2.44 16 2 C 0.16 3.09 2.87 -67.93 -0.19 2.90 16 3 H 0.07 1.36 7.86 -51.93 -0.41 0.95 16 4 C 0.11 1.91 4.93 -4.04 -0.02 1.89 16 5 N -0.69 -12.79 5.39 -61.35 -0.33 -13.12 16 6 C 0.60 10.61 7.82 -12.48 -0.10 10.51 16 7 O -0.56 -10.69 16.86 5.28 0.09 -10.60 16 8 C -0.09 -1.41 6.99 -83.55 -0.58 -2.00 16 9 C 0.09 0.96 11.27 -16.83 -0.19 0.77 16 10 N -0.37 -3.78 3.58 -61.07 -0.22 -4.00 16 11 C 0.13 0.75 5.69 -4.04 -0.02 0.72 16 12 C -0.14 -0.92 3.24 -89.05 -0.29 -1.21 16 13 H 0.11 0.90 8.06 -51.93 -0.42 0.49 16 14 C -0.15 -0.65 6.74 -25.16 -0.17 -0.82 16 15 C 0.04 0.24 7.63 37.93 0.29 0.53 16 16 O -0.37 -3.64 11.65 -35.23 -0.41 -4.06 16 17 C 0.05 0.42 7.08 37.93 0.27 0.69 16 18 N -0.06 -0.94 13.58 60.35 0.82 -0.12 16 19 N -0.19 -3.25 12.04 32.85 0.40 -2.86 16 20 N -0.59 -14.26 2.29 -173.48 -0.40 -14.66 16 21 C 0.17 4.09 8.00 59.85 0.48 4.57 16 22 C -0.26 -6.85 9.32 -15.06 -0.14 -6.99 16 23 H 0.07 1.76 7.81 -52.48 -0.41 1.35 16 24 C 0.01 0.16 5.12 -17.43 -0.09 0.07 16 25 N -0.91 -26.37 10.63 55.49 0.59 -25.78 16 26 Si 0.90 22.07 29.57 -169.99 -5.03 17.05 16 27 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 28 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 29 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 30 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.05 0.91 7.67 -51.93 -0.40 0.51 16 33 H 0.06 1.21 6.87 -51.93 -0.36 0.86 16 34 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 35 H 0.42 8.37 7.58 -40.82 -0.31 8.06 16 36 H 0.20 1.57 8.06 -52.49 -0.42 1.15 16 37 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.11 0.30 7.90 -51.93 -0.41 -0.11 16 39 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.08 0.18 7.73 -51.93 -0.40 -0.22 16 41 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 43 H 0.06 0.45 7.74 -51.93 -0.40 0.05 16 44 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.03 0.72 7.43 -51.93 -0.39 0.34 16 46 H 0.04 1.16 7.20 -51.93 -0.37 0.79 16 47 H 0.00 -0.08 6.53 -51.93 -0.34 -0.41 16 48 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 394.70 15.07 5.95 5.95 Total: -1.00 -33.72 394.70 -6.51 -40.23 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -7.55 Total: 2.75 kcal Atomic # 6 Polarization: 9.63 SS G_CDS: -0.42 Total: 9.21 kcal Atomic # 7 Polarization: -61.39 SS G_CDS: 0.86 Total: -60.53 kcal Atomic # 8 Polarization: -14.34 SS G_CDS: -0.32 Total: -14.66 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.03 Total: 17.05 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.72 -6.51 -40.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506031053.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.602 kcal (2) G-P(sol) polarization free energy of solvation -33.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds