Wall clock time and date at job start Tue Mar 31 2020 20:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.47172 * 2 1 4 4 C 1.53001 * 109.47165 * 120.00320 * 2 1 3 5 5 N 1.46506 * 109.47090 * 174.99955 * 4 2 1 6 6 C 1.34776 * 119.99860 * 179.97438 * 5 4 2 7 7 O 1.21593 * 119.99882 * 0.02562 * 6 5 4 8 8 C 1.47523 * 119.99846 * 179.72410 * 6 5 4 9 9 C 1.36597 * 125.77211 * 179.97438 * 8 6 5 10 10 N 1.34818 * 106.83929 * 179.83922 * 9 8 6 11 11 C 1.46501 * 126.59140 * 180.14967 * 10 9 8 12 12 C 1.52997 * 109.46678 * 125.29230 * 11 10 9 13 13 H 1.09003 * 110.45981 * 52.39373 * 12 11 10 14 14 C 1.54509 * 110.50990 * 175.00103 * 12 11 10 15 15 C 1.54478 * 104.06576 * 118.64319 * 14 12 11 16 16 O 1.44426 * 104.80226 * 23.97781 * 15 14 12 17 17 C 1.44422 * 105.27313 * 319.48939 * 16 15 14 18 18 N 1.40205 * 106.80966 * 0.41256 * 10 9 8 19 19 N 1.28766 * 108.37200 * 359.73681 * 18 10 9 20 20 N 1.46500 * 109.47076 * 240.00040 * 2 1 3 21 21 C 1.46505 * 119.99976 * 300.00155 * 20 2 1 22 22 C 1.36933 * 120.00171 * 119.99886 * 20 2 1 23 23 H 1.08003 * 120.00089 * 22.82161 * 22 20 2 24 24 C 1.38813 * 120.00459 * 202.82318 * 22 20 2 25 25 N 1.31621 * 119.99506 * 11.58463 * 24 22 20 26 26 Si 1.86794 * 120.00225 * 191.58499 * 24 22 20 27 27 H 1.48507 * 109.47133 * 60.00064 * 26 24 22 28 28 H 1.48502 * 109.47370 * 179.97438 * 26 24 22 29 29 H 1.48497 * 109.47676 * 300.00187 * 26 24 22 30 30 H 1.09001 * 109.46793 * 299.99874 * 1 2 3 31 31 H 1.08997 * 109.47461 * 60.00081 * 1 2 3 32 32 H 1.09005 * 109.47172 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47725 * 54.99845 * 4 2 1 34 34 H 1.08999 * 109.46777 * 294.99775 * 4 2 1 35 35 H 0.97003 * 119.99775 * 359.97438 * 5 4 2 36 36 H 1.07997 * 126.57572 * 0.02562 * 9 8 6 37 37 H 1.08995 * 109.46976 * 245.28562 * 11 10 9 38 38 H 1.08992 * 109.47103 * 5.29409 * 11 10 9 39 39 H 1.09003 * 110.50763 * 237.28707 * 14 12 11 40 40 H 1.08994 * 110.51026 * 359.97438 * 14 12 11 41 41 H 1.09001 * 110.37414 * 142.81008 * 15 14 12 42 42 H 1.09000 * 110.37036 * 265.14487 * 15 14 12 43 43 H 1.08999 * 110.36986 * 281.67700 * 17 16 15 44 44 H 1.09004 * 110.36942 * 159.34389 * 17 16 15 45 45 H 1.08997 * 109.47189 * 93.85091 * 21 20 2 46 46 H 1.09000 * 109.46597 * 213.85001 * 21 20 2 47 47 H 1.08994 * 109.46756 * 333.84686 * 21 20 2 48 48 H 0.96997 * 119.99730 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5001 -0.8265 1.1905 6 6 4.1731 -1.4284 2.1911 7 8 3.5685 -1.8846 3.1422 8 6 5.6429 -1.5397 2.1291 9 6 6.4400 -2.1227 3.0727 10 7 7.7095 -2.0157 2.6317 11 6 8.9136 -2.5020 3.3100 12 6 9.6962 -3.4170 2.3661 13 1 9.8739 -2.9189 1.4130 14 6 11.0336 -3.8440 3.0114 15 6 10.9281 -5.3820 3.1113 16 8 9.9755 -5.7535 2.0913 17 6 8.9410 -4.7475 2.1524 18 7 7.6564 -1.3442 1.4020 19 7 6.4244 -1.0793 1.1372 20 7 2.0183 -0.6906 -1.1962 21 6 1.6644 -2.0932 -1.4280 22 6 2.8055 -0.0252 -2.0976 23 1 3.3666 0.8437 -1.7865 24 6 2.8826 -0.4672 -3.4112 25 7 2.0365 -1.3746 -3.8508 26 14 4.1868 0.2257 -4.5549 27 1 5.5343 -0.0609 -4.0004 28 1 4.0581 -0.4059 -5.8928 29 1 4.0055 1.6941 -4.6807 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 1.6054 -1.7199 1.2952 34 1 1.7517 -0.1584 2.1369 35 1 3.9824 -0.4628 0.4315 36 1 6.1153 -2.5839 3.9937 37 1 9.5374 -1.6547 3.5947 38 1 8.6280 -3.0591 4.2022 39 1 11.8723 -3.5592 2.3762 40 1 11.1373 -3.4029 4.0027 41 1 11.8959 -5.8424 2.9124 42 1 10.5631 -5.6741 4.0959 43 1 8.2712 -4.9425 2.9899 44 1 8.3822 -4.7206 1.2169 45 1 0.7756 -2.1445 -2.0570 46 1 2.4915 -2.5991 -1.9260 47 1 1.4627 -2.5795 -0.4737 48 1 2.0901 -1.6833 -4.7687 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506031053.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:24 Heat of formation + Delta-G solvation = 14.636672 kcal Electronic energy + Delta-G solvation = -29493.428785 eV Core-core repulsion = 25392.591018 eV Total energy + Delta-G solvation = -4100.837768 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.23730 -40.59089 -40.31203 -38.35025 -36.32236 -35.39480 -33.76035 -33.29042 -31.95022 -31.07776 -30.34887 -28.00555 -27.84342 -27.02690 -25.01409 -24.34675 -23.90299 -23.02622 -21.83829 -21.10426 -20.79978 -19.12700 -18.79987 -17.72659 -17.34068 -17.15100 -17.01312 -16.85691 -16.49940 -16.32443 -16.03189 -15.62540 -15.51660 -15.27172 -14.88433 -14.56464 -14.46359 -14.03553 -13.85942 -13.73081 -13.50803 -13.08041 -13.03248 -12.95814 -12.85410 -12.62553 -12.51212 -12.43111 -12.32307 -12.28748 -12.13730 -12.10705 -11.77896 -11.60809 -11.49059 -11.26992 -11.17242 -10.84208 -10.59185 -10.37924 -9.88665 -8.75175 -7.78026 -5.24987 0.16540 0.66261 1.10505 1.47360 1.51243 1.55991 2.24466 2.34571 2.53724 2.90223 3.22921 3.27570 3.37479 3.48180 3.66577 3.73889 3.77177 3.93974 3.99002 4.06700 4.08194 4.18972 4.30333 4.38336 4.39910 4.52370 4.61872 4.66596 4.68633 4.75817 4.79751 4.81418 4.88758 4.96783 5.01167 5.07181 5.11460 5.26214 5.38033 5.44907 5.47309 5.58531 5.70048 5.76445 5.77456 6.37336 6.55245 6.95239 7.18575 7.22283 7.91453 8.35614 9.25295 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011764 B = 0.002895 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2379.652288 B = 9668.227709 C =11056.704218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.154 3.846 3 H 0.071 0.929 4 C 0.115 3.885 5 N -0.697 5.697 6 C 0.597 3.403 7 O -0.574 6.574 8 C -0.125 4.125 9 C 0.114 3.886 10 N -0.348 5.348 11 C 0.124 3.876 12 C -0.134 4.134 13 H 0.078 0.922 14 C -0.135 4.135 15 C 0.034 3.966 16 O -0.405 6.405 17 C 0.046 3.954 18 N -0.089 5.089 19 N -0.231 5.231 20 N -0.603 5.603 21 C 0.187 3.813 22 C -0.253 4.253 23 H 0.074 0.926 24 C -0.050 4.050 25 N -0.938 5.938 26 Si 0.959 3.041 27 H -0.284 1.284 28 H -0.299 1.299 29 H -0.274 1.274 30 H 0.080 0.920 31 H 0.040 0.960 32 H 0.045 0.955 33 H 0.054 0.946 34 H 0.083 0.917 35 H 0.411 0.589 36 H 0.243 0.757 37 H 0.128 0.872 38 H 0.149 0.851 39 H 0.083 0.917 40 H 0.117 0.883 41 H 0.101 0.899 42 H 0.081 0.919 43 H 0.079 0.921 44 H 0.062 0.938 45 H 0.003 0.997 46 H 0.010 0.990 47 H 0.020 0.980 48 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.895 -3.833 22.182 28.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.047 3.953 3 H 0.090 0.910 4 C -0.010 4.010 5 N -0.345 5.345 6 C 0.382 3.618 7 O -0.455 6.455 8 C -0.265 4.265 9 C -0.044 4.044 10 N -0.133 5.133 11 C 0.005 3.995 12 C -0.154 4.154 13 H 0.097 0.903 14 C -0.173 4.173 15 C -0.042 4.042 16 O -0.325 6.325 17 C -0.031 4.031 18 N -0.069 5.069 19 N -0.104 5.104 20 N -0.326 5.326 21 C 0.042 3.958 22 C -0.383 4.383 23 H 0.092 0.908 24 C -0.245 4.245 25 N -0.585 5.585 26 Si 0.789 3.211 27 H -0.210 1.210 28 H -0.225 1.225 29 H -0.200 1.200 30 H 0.098 0.902 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.072 0.928 34 H 0.101 0.899 35 H 0.247 0.753 36 H 0.259 0.741 37 H 0.146 0.854 38 H 0.167 0.833 39 H 0.102 0.898 40 H 0.136 0.864 41 H 0.119 0.881 42 H 0.099 0.901 43 H 0.097 0.903 44 H 0.081 0.919 45 H 0.021 0.979 46 H 0.029 0.971 47 H 0.039 0.961 48 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 17.322 -3.850 21.370 27.776 hybrid contribution 0.043 0.009 -1.025 1.026 sum 17.365 -3.841 20.344 27.022 Atomic orbital electron populations 1.22052 0.95628 1.01412 1.01491 1.20821 0.93886 0.95459 0.85114 0.91038 1.21891 0.78979 1.00942 0.99172 1.45823 1.08515 1.57377 1.22785 1.17009 0.84670 0.77725 0.82346 1.90728 1.69309 1.50842 1.34582 1.21564 0.95584 1.12952 0.96416 1.23836 0.82992 0.96974 1.00633 1.50815 1.07843 1.38593 1.16051 1.22672 0.81949 1.00057 0.94837 1.22820 0.96510 0.95670 1.00362 0.90342 1.22936 0.95234 0.95653 1.03518 1.23729 0.93679 0.94777 0.92047 1.89157 1.36002 1.49427 1.57908 1.23524 0.91034 0.86586 1.01988 1.81917 1.12069 1.14771 0.98139 1.74753 0.98385 1.14918 1.22385 1.44088 1.58285 1.07964 1.22277 1.20360 0.97303 0.84031 0.94155 1.19484 1.18429 1.10814 0.89546 0.90804 1.25667 1.00326 1.00275 0.98239 1.70219 1.37918 1.34879 1.15489 0.85455 0.79598 0.78155 0.77936 1.21033 1.22544 1.19970 0.90167 0.94066 0.93561 0.92774 0.89939 0.75295 0.74098 0.85427 0.83307 0.89809 0.86444 0.88130 0.90105 0.90285 0.91949 0.97907 0.97121 0.96147 0.94614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.02 9.19 71.98 0.66 -4.36 16 2 C 0.15 5.96 2.87 44.99 0.13 6.09 16 3 H 0.07 2.73 7.86 -2.38 -0.02 2.71 16 4 C 0.12 4.04 4.93 86.38 0.43 4.47 16 5 N -0.70 -25.76 5.39 -466.27 -2.51 -28.27 16 6 C 0.60 20.84 7.82 86.69 0.68 21.52 16 7 O -0.57 -21.09 16.86 -4.01 -0.07 -21.15 16 8 C -0.13 -3.80 6.99 40.82 0.29 -3.52 16 9 C 0.11 2.25 11.27 83.85 0.95 3.19 16 10 N -0.35 -6.31 3.58 -347.12 -1.24 -7.55 16 11 C 0.12 0.89 5.69 86.38 0.49 1.38 16 12 C -0.13 -1.51 3.24 -9.78 -0.03 -1.54 16 13 H 0.08 1.33 8.06 -2.39 -0.02 1.31 16 14 C -0.14 -0.77 6.74 31.61 0.21 -0.56 16 15 C 0.03 0.30 7.63 72.48 0.55 0.86 16 16 O -0.41 -7.72 11.65 -148.98 -1.74 -9.46 16 17 C 0.05 0.74 7.08 72.48 0.51 1.25 16 18 N -0.09 -2.55 13.58 37.02 0.50 -2.05 16 19 N -0.23 -7.94 12.04 -49.99 -0.60 -8.54 16 20 N -0.60 -29.30 2.29 -702.77 -1.61 -30.91 16 21 C 0.19 9.44 8.00 127.77 1.02 10.46 16 22 C -0.25 -13.60 9.32 84.03 0.78 -12.82 16 23 H 0.07 3.83 7.81 -2.91 -0.02 3.81 16 24 C -0.05 -2.83 5.12 84.86 0.43 -2.40 16 25 N -0.94 -56.35 10.63 21.65 0.23 -56.12 16 26 Si 0.96 46.46 29.57 68.60 2.03 48.49 16 27 H -0.28 -13.71 7.11 99.48 0.71 -13.00 16 28 H -0.30 -14.69 7.11 99.48 0.71 -13.98 16 29 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 30 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.05 1.61 7.67 -2.38 -0.02 1.59 16 33 H 0.05 2.00 6.87 -2.39 -0.02 1.98 16 34 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 35 H 0.41 16.65 7.58 -92.71 -0.70 15.95 16 36 H 0.24 2.63 8.06 -2.91 -0.02 2.61 16 37 H 0.13 0.43 8.14 -2.39 -0.02 0.41 16 38 H 0.15 -0.09 7.90 -2.39 -0.02 -0.11 16 39 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 40 H 0.12 -0.10 7.73 -2.39 -0.02 -0.12 16 41 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 43 H 0.08 0.96 7.74 -2.39 -0.02 0.94 16 44 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 45 H 0.00 0.15 7.43 -2.39 -0.02 0.13 16 46 H 0.01 0.57 7.20 -2.39 -0.02 0.55 16 47 H 0.02 0.91 6.53 -2.39 -0.02 0.89 16 48 H 0.24 14.48 8.31 -92.71 -0.77 13.71 16 Total: -1.00 -77.32 394.70 2.37 -74.96 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: 0.27 Total: 16.58 kcal Atomic # 6 Polarization: 16.92 SS G_CDS: 7.10 Total: 24.03 kcal Atomic # 7 Polarization: -128.21 SS G_CDS: -5.23 Total: -133.44 kcal Atomic # 8 Polarization: -28.81 SS G_CDS: -1.80 Total: -30.61 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 2.03 Total: 48.49 kcal Total: -77.32 2.37 -74.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506031053.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.593 kcal (2) G-P(sol) polarization free energy of solvation -77.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds