Wall clock time and date at job start Tue Mar 31 2020 20:08:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47369 * 2 1 4 4 C 1.53003 * 109.47287 * 119.99960 * 2 1 3 5 5 N 1.46496 * 109.47366 * 174.99997 * 4 2 1 6 6 C 1.34775 * 120.00185 * 179.97438 * 5 4 2 7 7 O 1.21588 * 119.99906 * 359.97438 * 6 5 4 8 8 C 1.47532 * 119.99922 * 179.97438 * 6 5 4 9 9 C 1.36596 * 125.76690 * 179.97438 * 8 6 5 10 10 N 1.34814 * 106.83912 * 179.97438 * 9 8 6 11 11 C 1.46499 * 126.59726 * 179.97438 * 10 9 8 12 12 C 1.53000 * 109.47267 * 125.00109 * 11 10 9 13 13 H 1.08997 * 110.43437 * 303.90775 * 12 11 10 14 14 C 1.54807 * 110.48584 * 181.22067 * 12 11 10 15 15 C 1.54997 * 102.09148 * 220.44036 * 14 12 11 16 16 O 1.44380 * 103.48989 * 37.02696 * 15 14 12 17 17 C 1.43746 * 106.97439 * 319.93800 * 16 15 14 18 18 N 1.40220 * 106.80722 * 0.02562 * 10 9 8 19 19 N 1.28760 * 108.36836 * 359.74839 * 18 10 9 20 20 N 1.46500 * 109.47101 * 239.99882 * 2 1 3 21 21 C 1.46498 * 119.99910 * 299.99695 * 20 2 1 22 22 C 1.36939 * 120.00069 * 120.00109 * 20 2 1 23 23 H 1.08000 * 120.00117 * 334.65238 * 22 20 2 24 24 C 1.38818 * 119.99976 * 154.65363 * 22 20 2 25 25 N 1.31618 * 119.99903 * 4.02913 * 24 22 20 26 26 Si 1.86800 * 119.99547 * 184.02647 * 24 22 20 27 27 H 1.48496 * 109.47372 * 90.00305 * 26 24 22 28 28 H 1.48506 * 109.46573 * 209.99724 * 26 24 22 29 29 H 1.48498 * 109.47266 * 329.99623 * 26 24 22 30 30 H 1.09000 * 109.47171 * 59.99868 * 1 2 3 31 31 H 1.08997 * 109.46706 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46809 * 300.00079 * 1 2 3 33 33 H 1.09005 * 109.46725 * 294.99925 * 4 2 1 34 34 H 1.08994 * 109.46953 * 54.99513 * 4 2 1 35 35 H 0.97011 * 120.00131 * 359.97438 * 5 4 2 36 36 H 1.08001 * 126.58108 * 0.02562 * 9 8 6 37 37 H 1.09000 * 109.46879 * 245.00038 * 11 10 9 38 38 H 1.09001 * 109.46623 * 5.00060 * 11 10 9 39 39 H 1.08999 * 110.90840 * 338.63865 * 14 12 11 40 40 H 1.09001 * 110.90594 * 102.24393 * 14 12 11 41 41 H 1.08994 * 110.62314 * 278.52545 * 15 14 12 42 42 H 1.09001 * 110.74970 * 155.58811 * 15 14 12 43 43 H 1.09001 * 109.87996 * 267.09019 * 17 16 15 44 44 H 1.09000 * 110.00679 * 146.00922 * 17 16 15 45 45 H 1.08994 * 109.47460 * 264.47678 * 21 20 2 46 46 H 1.09005 * 109.46828 * 144.47620 * 21 20 2 47 47 H 1.08997 * 109.46986 * 24.48304 * 21 20 2 48 48 H 0.96996 * 119.99876 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5000 -0.8264 1.1906 6 6 4.1731 -1.4282 2.1912 7 8 3.5686 -1.8836 3.1428 8 6 5.6434 -1.5346 2.1318 9 6 6.4405 -2.1171 3.0758 10 7 7.7108 -2.0024 2.6390 11 6 8.9155 -2.4820 3.3209 12 6 9.7029 -3.3976 2.3815 13 1 9.0743 -4.2175 2.0339 14 6 10.9667 -3.9429 3.0900 15 6 12.0281 -3.8692 1.9628 16 8 11.6899 -2.6537 1.2607 17 6 10.2555 -2.5974 1.1862 18 7 7.6572 -1.3348 1.4071 19 7 6.4244 -1.0791 1.1374 20 7 2.0183 -0.6906 -1.1962 21 6 1.6644 -2.0932 -1.4279 22 6 2.8056 -0.0252 -2.0976 23 1 2.7444 1.0501 -2.1776 24 6 3.6824 -0.7327 -2.9085 25 7 3.7006 -2.0481 -2.8677 26 14 4.8364 0.1822 -4.0577 27 1 6.1116 0.4694 -3.3532 28 1 5.1093 -0.6542 -5.2541 29 1 4.2055 1.4587 -4.4796 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.7517 -0.1582 2.1370 34 1 1.6054 -1.7197 1.2952 35 1 3.9825 -0.4628 0.4315 36 1 6.1155 -2.5813 3.9952 37 1 9.5358 -1.6315 3.6036 38 1 8.6304 -3.0369 4.2147 39 1 11.2466 -3.3071 3.9299 40 1 10.8164 -4.9721 3.4160 41 1 11.9450 -4.7308 1.3004 42 1 13.0323 -3.8038 2.3816 43 1 9.9151 -3.0440 0.2520 44 1 9.9193 -1.5622 1.2460 45 1 2.4637 -2.7355 -1.0582 46 1 1.5277 -2.2617 -2.4961 47 1 0.7386 -2.3260 -0.9020 48 1 4.3135 -2.5425 -3.4341 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001506031054.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:28 Heat of formation + Delta-G solvation = 43.636286 kcal Electronic energy + Delta-G solvation = -29811.200142 eV Core-core repulsion = 25711.619892 eV Total energy + Delta-G solvation = -4099.580250 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.11378 -39.78354 -38.85160 -36.59859 -35.42588 -33.62603 -32.51385 -31.94483 -30.83512 -29.67259 -29.13440 -26.90252 -25.96199 -25.79216 -23.35637 -23.07375 -22.62335 -22.04186 -21.06283 -19.87051 -19.26700 -17.77712 -16.92739 -16.86240 -16.58302 -15.96670 -15.72965 -15.56493 -15.24603 -15.09060 -14.58789 -14.43623 -14.06642 -13.80621 -13.60795 -13.43818 -13.03013 -12.69278 -12.60052 -12.29050 -12.14606 -12.01879 -11.90217 -11.77304 -11.54890 -11.53010 -11.27004 -11.02696 -10.89113 -10.77540 -10.61083 -10.32790 -10.25095 -10.21881 -9.93149 -9.79742 -9.73786 -9.65671 -9.16705 -8.44866 -8.32715 -6.69929 -5.67247 -3.15132 1.20612 1.97843 2.00911 3.45906 3.51277 3.53850 3.59369 3.65971 3.76757 3.94089 3.99426 4.23350 4.41980 4.54458 4.57423 4.68976 4.75457 4.84205 4.90662 5.11890 5.16812 5.24805 5.32373 5.41772 5.43484 5.45705 5.51992 5.61821 5.68000 5.77152 5.98214 6.04688 6.14504 6.19898 6.34620 6.39463 6.45265 6.56520 6.76057 6.88647 6.97595 7.13957 7.57040 7.83948 7.92921 8.01685 8.31363 8.47032 8.76487 9.31431 9.92093 10.42084 11.36152 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011724 B = 0.003265 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2387.774184 B = 8574.194313 C =10403.481340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.158 3.842 3 H 0.069 0.931 4 C 0.107 3.893 5 N -0.682 5.682 6 C 0.596 3.404 7 O -0.563 6.563 8 C -0.089 4.089 9 C 0.086 3.914 10 N -0.370 5.370 11 C 0.133 3.867 12 C -0.138 4.138 13 H 0.093 0.907 14 C -0.146 4.146 15 C 0.045 3.955 16 O -0.377 6.377 17 C 0.050 3.950 18 N -0.069 5.069 19 N -0.184 5.184 20 N -0.597 5.597 21 C 0.167 3.833 22 C -0.263 4.263 23 H 0.068 0.932 24 C 0.014 3.986 25 N -0.902 5.902 26 Si 0.898 3.102 27 H -0.283 1.283 28 H -0.293 1.293 29 H -0.281 1.281 30 H 0.056 0.944 31 H 0.052 0.948 32 H 0.045 0.955 33 H 0.056 0.944 34 H 0.060 0.940 35 H 0.423 0.577 36 H 0.202 0.798 37 H 0.101 0.899 38 H 0.107 0.893 39 H 0.083 0.917 40 H 0.086 0.914 41 H 0.061 0.939 42 H 0.094 0.906 43 H 0.064 0.936 44 H 0.103 0.897 45 H 0.024 0.976 46 H 0.050 0.950 47 H -0.008 1.008 48 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.439 -3.898 15.586 19.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.049 3.951 3 H 0.087 0.913 4 C -0.019 4.019 5 N -0.331 5.331 6 C 0.379 3.621 7 O -0.443 6.443 8 C -0.228 4.228 9 C -0.071 4.071 10 N -0.156 5.156 11 C 0.011 3.989 12 C -0.157 4.157 13 H 0.112 0.888 14 C -0.184 4.184 15 C -0.032 4.032 16 O -0.296 6.296 17 C -0.027 4.027 18 N -0.049 5.049 19 N -0.058 5.058 20 N -0.320 5.320 21 C 0.023 3.977 22 C -0.392 4.392 23 H 0.085 0.915 24 C -0.185 4.185 25 N -0.546 5.546 26 Si 0.728 3.272 27 H -0.209 1.209 28 H -0.219 1.219 29 H -0.207 1.207 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.261 0.739 36 H 0.219 0.781 37 H 0.119 0.881 38 H 0.126 0.874 39 H 0.102 0.898 40 H 0.105 0.895 41 H 0.080 0.920 42 H 0.112 0.888 43 H 0.083 0.917 44 H 0.121 0.879 45 H 0.042 0.958 46 H 0.069 0.931 47 H 0.010 0.990 48 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 12.072 -3.630 14.845 19.476 hybrid contribution 0.286 -0.255 -0.078 0.391 sum 12.358 -3.886 14.768 19.645 Atomic orbital electron populations 1.22175 0.97541 1.01436 1.00587 1.20650 0.92558 0.95952 0.85974 0.91308 1.22024 0.79437 1.01204 0.99242 1.45705 1.08246 1.56468 1.22671 1.16757 0.83687 0.78577 0.83032 1.90733 1.68664 1.50498 1.34401 1.21630 0.96434 1.10209 0.94570 1.23293 0.83553 0.99361 1.00867 1.50539 1.06569 1.40896 1.17555 1.22068 0.83279 0.98991 0.94516 1.22903 0.97552 0.98650 0.96615 0.88834 1.23153 0.93758 1.02396 0.99120 1.23543 0.98904 0.88351 0.92357 1.88917 1.21491 1.41088 1.78117 1.23383 0.80195 1.02376 0.96754 1.81956 1.13042 1.14153 0.95770 1.74814 0.97292 1.13061 1.20590 1.43925 1.58539 1.09683 1.19848 1.20821 0.93420 0.84176 0.99269 1.19183 1.14313 0.91367 1.14372 0.91462 1.25089 0.97771 0.95488 1.00101 1.70092 1.38444 1.04747 1.41319 0.86361 0.81932 0.78845 0.80074 1.20923 1.21926 1.20691 0.92449 0.92942 0.93631 0.92608 0.92157 0.73900 0.78141 0.88077 0.87448 0.89833 0.89538 0.92048 0.88762 0.91723 0.87871 0.95796 0.93090 0.98982 0.93836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.66 9.18 37.16 0.34 -2.32 16 2 C 0.16 3.10 2.87 -67.93 -0.19 2.91 16 3 H 0.07 1.35 7.88 -51.93 -0.41 0.94 16 4 C 0.11 2.04 4.97 -4.04 -0.02 2.02 16 5 N -0.68 -13.88 5.38 -61.35 -0.33 -14.21 16 6 C 0.60 11.64 7.82 -12.47 -0.10 11.54 16 7 O -0.56 -11.56 16.86 5.29 0.09 -11.47 16 8 C -0.09 -1.55 6.99 -83.55 -0.58 -2.14 16 9 C 0.09 1.10 11.27 -16.84 -0.19 0.91 16 10 N -0.37 -4.41 3.69 -61.06 -0.23 -4.63 16 11 C 0.13 0.95 5.73 -4.04 -0.02 0.92 16 12 C -0.14 -1.08 3.30 -89.09 -0.29 -1.37 16 13 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 14 C -0.15 -0.78 6.71 -24.72 -0.17 -0.95 16 15 C 0.05 0.33 7.72 38.21 0.29 0.62 16 16 O -0.38 -4.29 11.52 -35.23 -0.41 -4.69 16 17 C 0.05 0.55 6.59 37.73 0.25 0.80 16 18 N -0.07 -1.12 11.46 60.35 0.69 -0.43 16 19 N -0.18 -3.52 12.04 32.85 0.40 -3.12 16 20 N -0.60 -14.30 2.29 -173.48 -0.40 -14.69 16 21 C 0.17 4.12 8.07 59.85 0.48 4.61 16 22 C -0.26 -6.96 9.32 -15.06 -0.14 -7.10 16 23 H 0.07 1.75 7.81 -52.49 -0.41 1.34 16 24 C 0.01 0.40 5.38 -17.43 -0.09 0.30 16 25 N -0.90 -25.83 10.13 55.49 0.56 -25.27 16 26 Si 0.90 21.99 29.56 -169.99 -5.02 16.97 16 27 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 28 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 29 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 30 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.05 0.89 6.67 -51.93 -0.35 0.55 16 32 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.06 1.21 7.84 -51.93 -0.41 0.80 16 35 H 0.42 9.45 7.58 -40.82 -0.31 9.14 16 36 H 0.20 1.84 8.06 -52.49 -0.42 1.42 16 37 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.11 0.41 8.08 -51.93 -0.42 -0.01 16 39 H 0.08 0.35 7.87 -51.93 -0.41 -0.06 16 40 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.10 1.28 6.21 -51.93 -0.32 0.96 16 45 H 0.02 0.64 7.44 -51.93 -0.39 0.26 16 46 H 0.05 1.37 7.03 -51.93 -0.37 1.01 16 47 H -0.01 -0.18 6.44 -51.93 -0.33 -0.52 16 48 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 390.65 15.07 5.89 5.89 Total: -1.00 -33.18 390.65 -6.67 -39.86 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: -7.48 Total: 5.05 kcal Atomic # 6 Polarization: 11.20 SS G_CDS: -0.44 Total: 10.76 kcal Atomic # 7 Polarization: -63.05 SS G_CDS: 0.69 Total: -62.36 kcal Atomic # 8 Polarization: -15.84 SS G_CDS: -0.32 Total: -16.16 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.18 -6.67 -39.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506031054.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.493 kcal (2) G-P(sol) polarization free energy of solvation -33.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds