Wall clock time and date at job start Tue Mar 31 2020 20:08:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47369 * 2 1 4 4 C 1.53003 * 109.47287 * 119.99960 * 2 1 3 5 5 N 1.46496 * 109.47366 * 174.99997 * 4 2 1 6 6 C 1.34775 * 120.00185 * 179.97438 * 5 4 2 7 7 O 1.21588 * 119.99906 * 359.97438 * 6 5 4 8 8 C 1.47532 * 119.99922 * 179.97438 * 6 5 4 9 9 C 1.36596 * 125.76690 * 179.97438 * 8 6 5 10 10 N 1.34814 * 106.83912 * 179.97438 * 9 8 6 11 11 C 1.46499 * 126.59726 * 179.97438 * 10 9 8 12 12 C 1.53000 * 109.47267 * 125.00109 * 11 10 9 13 13 H 1.08997 * 110.43437 * 303.90775 * 12 11 10 14 14 C 1.54807 * 110.48584 * 181.22067 * 12 11 10 15 15 C 1.54997 * 102.09148 * 220.44036 * 14 12 11 16 16 O 1.44380 * 103.48989 * 37.02696 * 15 14 12 17 17 C 1.43746 * 106.97439 * 319.93800 * 16 15 14 18 18 N 1.40220 * 106.80722 * 0.02562 * 10 9 8 19 19 N 1.28760 * 108.36836 * 359.74839 * 18 10 9 20 20 N 1.46500 * 109.47101 * 239.99882 * 2 1 3 21 21 C 1.46498 * 119.99910 * 299.99695 * 20 2 1 22 22 C 1.36939 * 120.00069 * 120.00109 * 20 2 1 23 23 H 1.08000 * 120.00117 * 334.65238 * 22 20 2 24 24 C 1.38818 * 119.99976 * 154.65363 * 22 20 2 25 25 N 1.31618 * 119.99903 * 4.02913 * 24 22 20 26 26 Si 1.86800 * 119.99547 * 184.02647 * 24 22 20 27 27 H 1.48496 * 109.47372 * 90.00305 * 26 24 22 28 28 H 1.48506 * 109.46573 * 209.99724 * 26 24 22 29 29 H 1.48498 * 109.47266 * 329.99623 * 26 24 22 30 30 H 1.09000 * 109.47171 * 59.99868 * 1 2 3 31 31 H 1.08997 * 109.46706 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46809 * 300.00079 * 1 2 3 33 33 H 1.09005 * 109.46725 * 294.99925 * 4 2 1 34 34 H 1.08994 * 109.46953 * 54.99513 * 4 2 1 35 35 H 0.97011 * 120.00131 * 359.97438 * 5 4 2 36 36 H 1.08001 * 126.58108 * 0.02562 * 9 8 6 37 37 H 1.09000 * 109.46879 * 245.00038 * 11 10 9 38 38 H 1.09001 * 109.46623 * 5.00060 * 11 10 9 39 39 H 1.08999 * 110.90840 * 338.63865 * 14 12 11 40 40 H 1.09001 * 110.90594 * 102.24393 * 14 12 11 41 41 H 1.08994 * 110.62314 * 278.52545 * 15 14 12 42 42 H 1.09001 * 110.74970 * 155.58811 * 15 14 12 43 43 H 1.09001 * 109.87996 * 267.09019 * 17 16 15 44 44 H 1.09000 * 110.00679 * 146.00922 * 17 16 15 45 45 H 1.08994 * 109.47460 * 264.47678 * 21 20 2 46 46 H 1.09005 * 109.46828 * 144.47620 * 21 20 2 47 47 H 1.08997 * 109.46986 * 24.48304 * 21 20 2 48 48 H 0.96996 * 119.99876 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5000 -0.8264 1.1906 6 6 4.1731 -1.4282 2.1912 7 8 3.5686 -1.8836 3.1428 8 6 5.6434 -1.5346 2.1318 9 6 6.4405 -2.1171 3.0758 10 7 7.7108 -2.0024 2.6390 11 6 8.9155 -2.4820 3.3209 12 6 9.7029 -3.3976 2.3815 13 1 9.0743 -4.2175 2.0339 14 6 10.9667 -3.9429 3.0900 15 6 12.0281 -3.8692 1.9628 16 8 11.6899 -2.6537 1.2607 17 6 10.2555 -2.5974 1.1862 18 7 7.6572 -1.3348 1.4071 19 7 6.4244 -1.0791 1.1374 20 7 2.0183 -0.6906 -1.1962 21 6 1.6644 -2.0932 -1.4279 22 6 2.8056 -0.0252 -2.0976 23 1 2.7444 1.0501 -2.1776 24 6 3.6824 -0.7327 -2.9085 25 7 3.7006 -2.0481 -2.8677 26 14 4.8364 0.1822 -4.0577 27 1 6.1116 0.4694 -3.3532 28 1 5.1093 -0.6542 -5.2541 29 1 4.2055 1.4587 -4.4796 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.7517 -0.1582 2.1370 34 1 1.6054 -1.7197 1.2952 35 1 3.9825 -0.4628 0.4315 36 1 6.1155 -2.5813 3.9952 37 1 9.5358 -1.6315 3.6036 38 1 8.6304 -3.0369 4.2147 39 1 11.2466 -3.3071 3.9299 40 1 10.8164 -4.9721 3.4160 41 1 11.9450 -4.7308 1.3004 42 1 13.0323 -3.8038 2.3816 43 1 9.9151 -3.0440 0.2520 44 1 9.9193 -1.5622 1.2460 45 1 2.4637 -2.7355 -1.0582 46 1 1.5277 -2.2617 -2.4961 47 1 0.7386 -2.3260 -0.9020 48 1 4.3135 -2.5425 -3.4341 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506031054.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:27 Heat of formation + Delta-G solvation = 19.315919 kcal Electronic energy + Delta-G solvation = -29812.254752 eV Core-core repulsion = 25711.619892 eV Total energy + Delta-G solvation = -4100.634860 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.24542 -40.57922 -40.27994 -38.32376 -36.32044 -35.34811 -33.78885 -33.29267 -31.99069 -31.02009 -30.33827 -27.99072 -27.80719 -27.13312 -24.97250 -24.12097 -23.94042 -22.90274 -21.86442 -21.17657 -20.88740 -19.01360 -18.81178 -17.64176 -17.40351 -17.18353 -17.05625 -16.96177 -16.67206 -16.09908 -15.95571 -15.68819 -15.45465 -15.20424 -14.69031 -14.56901 -14.36093 -14.17609 -13.87305 -13.74108 -13.56600 -13.15732 -13.10836 -12.78256 -12.71183 -12.60316 -12.50879 -12.43550 -12.37004 -12.20319 -12.07545 -11.98001 -11.82828 -11.74114 -11.45462 -11.29440 -11.15644 -10.72245 -10.55453 -10.38356 -9.85705 -8.70028 -7.77489 -5.24453 0.15774 0.66921 1.10292 1.46250 1.51772 1.55238 2.25762 2.38288 2.53403 2.93063 3.23810 3.24923 3.39321 3.39580 3.67464 3.70524 3.80187 3.91839 3.99507 4.10676 4.14532 4.21457 4.30676 4.43194 4.46217 4.49390 4.64901 4.66312 4.75917 4.76447 4.81971 4.86256 4.89318 4.93112 4.96751 5.10148 5.13377 5.31478 5.40243 5.46533 5.51072 5.63889 5.72523 5.84835 5.85645 6.40060 6.58013 6.96398 7.22112 7.24186 7.94244 8.38846 9.24624 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011724 B = 0.003265 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2387.774184 B = 8574.194313 C =10403.481340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.154 3.846 3 H 0.070 0.930 4 C 0.113 3.887 5 N -0.693 5.693 6 C 0.596 3.404 7 O -0.577 6.577 8 C -0.126 4.126 9 C 0.116 3.884 10 N -0.351 5.351 11 C 0.123 3.877 12 C -0.133 4.133 13 H 0.087 0.913 14 C -0.130 4.130 15 C 0.032 3.968 16 O -0.404 6.404 17 C 0.047 3.953 18 N -0.093 5.093 19 N -0.231 5.231 20 N -0.606 5.606 21 C 0.188 3.812 22 C -0.258 4.258 23 H 0.072 0.928 24 C -0.035 4.035 25 N -0.929 5.929 26 Si 0.951 3.049 27 H -0.292 1.292 28 H -0.300 1.300 29 H -0.268 1.268 30 H 0.051 0.949 31 H 0.049 0.951 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.048 0.952 35 H 0.411 0.589 36 H 0.246 0.754 37 H 0.116 0.884 38 H 0.158 0.842 39 H 0.104 0.896 40 H 0.111 0.889 41 H 0.060 0.940 42 H 0.113 0.887 43 H 0.036 0.964 44 H 0.084 0.916 45 H -0.008 1.008 46 H 0.021 0.979 47 H 0.020 0.980 48 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.825 -4.032 18.767 22.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.047 3.953 3 H 0.089 0.911 4 C -0.012 4.012 5 N -0.341 5.341 6 C 0.381 3.619 7 O -0.458 6.458 8 C -0.267 4.267 9 C -0.042 4.042 10 N -0.136 5.136 11 C 0.004 3.996 12 C -0.152 4.152 13 H 0.106 0.894 14 C -0.168 4.168 15 C -0.044 4.044 16 O -0.324 6.324 17 C -0.030 4.030 18 N -0.073 5.073 19 N -0.103 5.103 20 N -0.330 5.330 21 C 0.043 3.957 22 C -0.388 4.388 23 H 0.090 0.910 24 C -0.231 4.231 25 N -0.576 5.576 26 Si 0.781 3.219 27 H -0.219 1.219 28 H -0.227 1.227 29 H -0.192 1.192 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.067 0.933 35 H 0.247 0.753 36 H 0.262 0.738 37 H 0.134 0.866 38 H 0.176 0.824 39 H 0.123 0.877 40 H 0.129 0.871 41 H 0.078 0.922 42 H 0.131 0.869 43 H 0.055 0.945 44 H 0.103 0.897 45 H 0.010 0.990 46 H 0.040 0.960 47 H 0.038 0.962 48 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 12.466 -3.739 18.048 22.251 hybrid contribution 0.251 -0.228 -0.974 1.032 sum 12.717 -3.967 17.074 21.656 Atomic orbital electron populations 1.22052 0.94781 1.01763 1.02063 1.20871 0.94426 0.95492 0.84491 0.91138 1.21975 0.78972 1.00678 0.99613 1.45829 1.08699 1.56990 1.22605 1.17019 0.84694 0.77784 0.82436 1.90701 1.69329 1.51086 1.34663 1.21631 0.95764 1.13015 0.96242 1.23846 0.82880 0.96800 1.00649 1.50859 1.07850 1.38792 1.16064 1.22660 0.81731 0.99968 0.95240 1.22855 0.98638 0.98038 0.95682 0.89436 1.23146 0.90996 1.04165 0.98483 1.23851 1.00723 0.86833 0.92967 1.88886 1.21384 1.43114 1.79012 1.23277 0.80689 1.01611 0.97405 1.81876 1.12022 1.15366 0.98035 1.74785 0.98441 1.14830 1.22293 1.44055 1.58433 1.09374 1.21117 1.20441 0.93465 0.84382 0.97430 1.19458 1.13609 0.91623 1.14081 0.91029 1.25660 0.99341 0.96028 1.02027 1.70259 1.39129 1.05831 1.42331 0.85508 0.79974 0.78260 0.78174 1.21945 1.22695 1.19243 0.92958 0.93145 0.90177 0.90284 0.93321 0.75276 0.73817 0.86575 0.82437 0.87710 0.87058 0.92202 0.86869 0.94543 0.89745 0.98973 0.96014 0.96171 0.94845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.63 9.18 71.98 0.66 -3.97 16 2 C 0.15 5.93 2.87 44.99 0.13 6.05 16 3 H 0.07 2.68 7.88 -2.39 -0.02 2.66 16 4 C 0.11 4.21 4.97 86.38 0.43 4.64 16 5 N -0.69 -28.57 5.38 -466.28 -2.51 -31.08 16 6 C 0.60 23.24 7.82 86.69 0.68 23.92 16 7 O -0.58 -23.07 16.86 -3.99 -0.07 -23.13 16 8 C -0.13 -4.40 6.99 40.82 0.29 -4.11 16 9 C 0.12 2.71 11.27 83.85 0.95 3.65 16 10 N -0.35 -7.69 3.69 -347.10 -1.28 -8.97 16 11 C 0.12 1.31 5.73 86.38 0.49 1.80 16 12 C -0.13 -1.80 3.30 -9.80 -0.03 -1.83 16 13 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 14 C -0.13 -0.93 6.71 31.89 0.21 -0.71 16 15 C 0.03 0.41 7.72 72.67 0.56 0.97 16 16 O -0.40 -9.19 11.52 -148.98 -1.72 -10.91 16 17 C 0.05 1.07 6.59 72.35 0.48 1.55 16 18 N -0.09 -3.08 11.46 37.02 0.42 -2.66 16 19 N -0.23 -9.10 12.04 -49.99 -0.60 -9.70 16 20 N -0.61 -29.22 2.29 -702.77 -1.61 -30.84 16 21 C 0.19 9.43 8.07 127.77 1.03 10.46 16 22 C -0.26 -13.78 9.32 84.03 0.78 -12.99 16 23 H 0.07 3.72 7.81 -2.91 -0.02 3.70 16 24 C -0.03 -1.95 5.38 84.86 0.46 -1.50 16 25 N -0.93 -55.30 10.13 21.65 0.22 -55.08 16 26 Si 0.95 46.50 29.56 68.60 2.03 48.53 16 27 H -0.29 -14.62 7.11 99.48 0.71 -13.91 16 28 H -0.30 -14.90 7.11 99.48 0.71 -14.20 16 29 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 30 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.05 1.60 6.67 -2.39 -0.02 1.59 16 32 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.08 2.57 8.14 -2.38 -0.02 2.55 16 34 H 0.05 1.92 7.84 -2.39 -0.02 1.90 16 35 H 0.41 18.99 7.58 -92.70 -0.70 18.29 16 36 H 0.25 3.34 8.06 -2.91 -0.02 3.32 16 37 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.16 0.23 8.08 -2.39 -0.02 0.21 16 39 H 0.10 0.36 7.87 -2.39 -0.02 0.34 16 40 H 0.11 0.32 8.14 -2.39 -0.02 0.30 16 41 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 42 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.08 2.20 6.21 -2.39 -0.01 2.19 16 45 H -0.01 -0.46 7.44 -2.39 -0.02 -0.47 16 46 H 0.02 1.18 7.03 -2.38 -0.02 1.17 16 47 H 0.02 0.88 6.44 -2.39 -0.02 0.86 16 48 H 0.24 14.35 8.31 -92.71 -0.77 13.58 16 Total: -1.00 -77.08 390.65 2.26 -74.82 By element: Atomic # 1 Polarization: 20.80 SS G_CDS: 0.27 Total: 21.07 kcal Atomic # 6 Polarization: 20.84 SS G_CDS: 7.11 Total: 27.95 kcal Atomic # 7 Polarization: -132.97 SS G_CDS: -5.36 Total: -138.33 kcal Atomic # 8 Polarization: -32.26 SS G_CDS: -1.78 Total: -34.04 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 2.03 Total: 48.53 kcal Total: -77.08 2.26 -74.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506031054.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.133 kcal (2) G-P(sol) polarization free energy of solvation -77.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds