Wall clock time and date at job start Tue Mar 31 2020 20:28:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46503 * 109.46943 * 2 1 4 4 C 1.35845 * 126.13129 * 269.97376 * 3 2 1 5 5 N 1.30175 * 108.99966 * 179.78845 * 4 3 2 6 6 C 1.35762 * 108.86515 * 0.37990 * 5 4 3 7 7 C 1.47322 * 126.23172 * 179.88328 * 6 5 4 8 8 O 1.21625 * 119.99995 * 179.68932 * 7 6 5 9 9 N 1.34779 * 120.00215 * 359.69316 * 7 6 5 10 10 C 1.46499 * 119.99730 * 180.02562 * 9 7 6 11 11 C 1.53003 * 109.46870 * 179.97438 * 10 9 7 12 12 H 1.09000 * 109.47130 * 294.99812 * 11 10 9 13 13 C 1.53006 * 109.47203 * 174.99853 * 11 10 9 14 14 N 1.46906 * 109.47132 * 54.99989 * 11 10 9 15 15 C 1.46893 * 111.00136 * 66.04414 * 14 11 10 16 16 C 1.46901 * 110.99853 * 190.00109 * 14 11 10 17 17 C 1.50701 * 109.46921 * 169.99766 * 16 14 11 18 18 O 1.21294 * 119.99849 * 0.02562 * 17 16 14 19 19 N 1.34780 * 119.99795 * 179.97438 * 17 16 14 20 20 C 1.37101 * 119.99707 * 180.02562 * 19 17 16 21 21 H 1.08002 * 119.99704 * 359.97438 * 20 19 17 22 22 C 1.38941 * 119.99927 * 180.02562 * 20 19 17 23 23 N 1.31413 * 120.00506 * 180.02562 * 22 20 19 24 24 Si 1.86804 * 120.00009 * 359.97438 * 22 20 19 25 25 H 1.48494 * 109.47177 * 89.99959 * 24 22 20 26 26 H 1.48505 * 109.47036 * 210.00243 * 24 22 20 27 27 H 1.48499 * 109.46776 * 329.99732 * 24 22 20 28 28 C 1.35371 * 126.13738 * 90.00466 * 3 2 1 29 29 H 1.09005 * 109.47404 * 59.99808 * 1 2 3 30 30 H 1.08994 * 109.47384 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46967 * 300.00060 * 1 2 3 32 32 H 1.08999 * 109.46637 * 239.99990 * 2 1 3 33 33 H 1.08994 * 109.47004 * 119.99942 * 2 1 3 34 34 H 1.07994 * 125.50360 * 0.02562 * 4 3 2 35 35 H 0.97000 * 120.00024 * 359.97438 * 9 7 6 36 36 H 1.08999 * 109.47772 * 59.99986 * 10 9 7 37 37 H 1.08995 * 109.47198 * 299.99666 * 10 9 7 38 38 H 1.09000 * 109.47044 * 300.00012 * 13 11 10 39 39 H 1.09002 * 109.46733 * 60.00059 * 13 11 10 40 40 H 1.09001 * 109.47141 * 179.97438 * 13 11 10 41 41 H 1.08999 * 109.47439 * 183.95618 * 15 14 11 42 42 H 1.08997 * 109.47257 * 303.95746 * 15 14 11 43 43 H 1.09006 * 109.46808 * 63.95302 * 15 14 11 44 44 H 1.09002 * 109.47401 * 49.99794 * 16 14 11 45 45 H 1.09001 * 109.46874 * 289.99807 * 16 14 11 46 46 H 0.96995 * 120.00011 * 0.02562 * 19 17 16 47 47 H 0.96993 * 120.00255 * 180.02562 * 23 22 20 48 48 H 1.08000 * 126.56165 * 359.97438 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2858 2.1363 -1.0972 5 7 2.6960 3.3107 -0.7137 6 6 2.7142 3.3478 0.6433 7 6 3.1184 4.4927 1.4776 8 8 3.0857 4.4032 2.6901 9 7 3.5245 5.6395 0.8974 10 6 3.9269 6.7777 1.7272 11 6 4.3407 7.9439 0.8273 12 1 5.2318 7.6690 0.2630 13 6 4.6414 9.1716 1.6893 14 7 3.2481 8.2552 -0.1041 15 6 2.0738 8.7678 0.6144 16 6 3.6896 9.2036 -1.1354 17 6 2.6333 9.3104 -2.2049 18 8 1.6128 8.6608 -2.1164 19 7 2.8221 10.1286 -3.2592 20 6 1.8609 10.2262 -4.2319 21 1 0.9526 9.6471 -4.1535 22 6 2.0557 11.0692 -5.3190 23 7 1.1343 11.1632 -6.2512 24 14 3.6271 12.0702 -5.4549 25 1 4.6499 11.2880 -6.1945 26 1 3.3476 13.3337 -6.1836 27 1 4.1326 12.3849 -4.0945 28 6 2.2845 2.1339 1.0933 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 2.1724 1.8155 -2.1221 35 1 3.5509 5.7108 -0.0696 36 1 4.7685 6.4889 2.3568 37 1 3.0905 7.0826 2.3561 38 1 3.7502 9.4465 2.2536 39 1 5.4521 8.9406 2.3803 40 1 4.9366 10.0023 1.0482 41 1 1.2565 8.9239 -0.0897 42 1 1.7679 8.0463 1.3720 43 1 2.3258 9.7136 1.0942 44 1 4.6210 8.8510 -1.5785 45 1 3.8499 10.1827 -0.6839 46 1 3.6380 10.6484 -3.3297 47 1 1.2705 11.7514 -7.0103 48 1 2.1772 1.8312 2.1244 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001506041489.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:55 Heat of formation + Delta-G solvation = 5.233236 kcal Electronic energy + Delta-G solvation = -29112.024503 eV Core-core repulsion = 25010.778971 eV Total energy + Delta-G solvation = -4101.245531 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.30263 -39.53216 -38.69980 -37.30024 -35.28986 -34.23016 -33.74286 -31.62953 -31.08733 -30.56207 -29.74266 -27.97625 -26.58803 -25.37390 -24.28144 -23.61396 -22.74118 -21.07851 -20.07263 -19.72289 -19.25493 -18.19706 -17.94764 -16.56002 -16.23764 -15.99640 -15.80673 -15.34500 -14.99335 -14.91401 -14.78949 -14.47264 -14.16713 -14.07264 -13.95477 -13.63505 -13.28909 -13.11272 -13.00332 -12.87738 -12.70938 -12.52141 -12.43574 -12.13026 -11.87383 -11.85390 -11.57068 -11.29890 -11.21013 -10.95099 -10.72546 -10.56209 -10.33602 -9.94992 -9.93327 -9.92152 -9.48523 -8.93055 -8.61649 -8.51670 -8.12658 -7.86907 -6.26471 -3.77384 1.53225 2.36383 2.41352 3.05500 3.09927 3.17809 3.42276 3.67395 3.80658 3.98088 4.14265 4.15601 4.38495 4.44309 4.53915 4.69268 4.76817 4.83511 5.02262 5.08856 5.13022 5.13815 5.23162 5.27036 5.38755 5.46682 5.55820 5.56705 5.58360 5.73050 5.78773 5.87324 5.89154 5.92186 5.99383 6.02724 6.16716 6.33409 6.59822 6.66790 6.85323 7.21845 7.36324 7.61570 7.63879 7.94237 8.20303 8.45787 8.65873 9.00917 9.48017 9.90238 10.86893 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011293 B = 0.002650 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2478.751072 B =10561.929723 C =12457.086785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.099 3.901 3 N -0.459 5.459 4 C 0.186 3.814 5 N -0.454 5.454 6 C -0.059 4.059 7 C 0.602 3.398 8 O -0.561 6.561 9 N -0.698 5.698 10 C 0.133 3.867 11 C 0.063 3.937 12 H 0.088 0.912 13 C -0.185 4.185 14 N -0.509 5.509 15 C 0.017 3.983 16 C 0.042 3.958 17 C 0.455 3.545 18 O -0.555 6.555 19 N -0.594 5.594 20 C -0.301 4.301 21 H 0.119 0.881 22 C 0.040 3.960 23 N -0.884 5.884 24 Si 0.879 3.121 25 H -0.271 1.271 26 H -0.278 1.278 27 H -0.270 1.270 28 C 0.029 3.971 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.064 0.936 32 H 0.097 0.903 33 H 0.093 0.907 34 H 0.211 0.789 35 H 0.420 0.580 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.064 0.936 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.096 0.904 42 H 0.061 0.939 43 H 0.020 0.980 44 H 0.089 0.911 45 H 0.050 0.950 46 H 0.369 0.631 47 H 0.272 0.728 48 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.826 -18.274 14.724 24.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.023 4.023 3 N -0.142 5.142 4 C -0.098 4.098 5 N -0.172 5.172 6 C -0.188 4.188 7 C 0.388 3.612 8 O -0.440 6.440 9 N -0.348 5.348 10 C 0.008 3.992 11 C -0.046 4.046 12 H 0.106 0.894 13 C -0.244 4.244 14 N -0.233 5.233 15 C -0.130 4.130 16 C -0.089 4.089 17 C 0.240 3.760 18 O -0.437 6.437 19 N -0.234 5.234 20 C -0.430 4.430 21 H 0.137 0.863 22 C -0.162 4.162 23 N -0.524 5.524 24 Si 0.706 3.294 25 H -0.196 1.196 26 H -0.203 1.203 27 H -0.196 1.196 28 C -0.110 4.110 29 H 0.086 0.914 30 H 0.096 0.904 31 H 0.084 0.916 32 H 0.116 0.884 33 H 0.112 0.888 34 H 0.227 0.773 35 H 0.258 0.742 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.114 0.886 42 H 0.080 0.920 43 H 0.039 0.961 44 H 0.107 0.893 45 H 0.068 0.932 46 H 0.202 0.798 47 H 0.083 0.917 48 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 6.075 -18.554 14.663 24.416 hybrid contribution 1.172 1.044 0.033 1.570 sum 7.248 -17.510 14.696 23.981 Atomic orbital electron populations 1.22192 0.93759 1.03359 1.03719 1.21940 0.95923 0.79440 1.04960 1.45565 1.48602 1.13121 1.06882 1.25231 1.03571 0.87366 0.93617 1.70708 1.17442 1.18769 1.10242 1.20575 1.12231 0.95387 0.90646 1.16897 0.76605 0.81517 0.86188 1.90757 1.56310 1.83427 1.13533 1.45635 1.65576 1.11678 1.11960 1.21363 1.00018 0.84972 0.92829 1.22051 0.94967 0.94188 0.93376 0.89362 1.22403 1.02421 0.98750 1.00826 1.61769 1.05031 1.44056 1.12406 1.22599 0.94443 0.97030 0.98957 1.21921 0.98500 0.95017 0.93504 1.19653 0.88925 0.83598 0.83814 1.90540 1.29283 1.46295 1.77549 1.42212 1.19341 1.40227 1.21574 1.19419 1.00238 1.24806 0.98531 0.86301 1.25025 0.97654 0.97747 0.95814 1.69620 1.33469 1.38406 1.10922 0.86681 0.83557 0.80725 0.78463 1.19643 1.20294 1.19573 1.22513 1.03364 0.92017 0.93109 0.91414 0.90369 0.91641 0.88427 0.88828 0.77295 0.74212 0.91271 0.91424 0.91694 0.91892 0.91916 0.88597 0.92034 0.96128 0.89319 0.93209 0.79810 0.91706 0.79824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.73 10.24 37.16 0.38 -0.35 16 2 C 0.10 0.42 6.84 -4.04 -0.03 0.39 16 3 N -0.46 -3.91 2.72 -118.37 -0.32 -4.23 16 4 C 0.19 1.92 12.55 -89.91 -1.13 0.80 16 5 N -0.45 -6.52 11.01 -11.04 -0.12 -6.64 16 6 C -0.06 -0.85 6.98 -83.09 -0.58 -1.43 16 7 C 0.60 9.49 7.81 -12.56 -0.10 9.39 16 8 O -0.56 -9.81 16.88 5.26 0.09 -9.72 16 9 N -0.70 -10.30 5.38 -61.42 -0.33 -10.63 16 10 C 0.13 1.70 4.85 -4.04 -0.02 1.68 16 11 C 0.06 0.77 2.47 -67.70 -0.17 0.60 16 12 H 0.09 1.00 7.93 -51.93 -0.41 0.59 16 13 C -0.18 -1.90 8.44 37.16 0.31 -1.58 16 14 N -0.51 -8.01 3.89 -236.32 -0.92 -8.93 16 15 C 0.02 0.28 8.32 60.06 0.50 0.78 16 16 C 0.04 0.70 5.02 -4.97 -0.02 0.67 16 17 C 0.45 10.30 7.51 -10.98 -0.08 10.22 16 18 O -0.56 -14.81 13.88 5.55 0.08 -14.73 16 19 N -0.59 -14.19 5.09 -10.96 -0.06 -14.24 16 20 C -0.30 -8.56 10.16 -14.94 -0.15 -8.71 16 21 H 0.12 3.87 7.39 -52.49 -0.39 3.48 16 22 C 0.04 1.11 5.50 -17.47 -0.10 1.01 16 23 N -0.88 -26.02 13.96 55.50 0.77 -25.25 16 24 Si 0.88 19.53 27.74 -169.99 -4.71 14.81 16 25 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 26 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 27 H -0.27 -5.47 6.52 56.52 0.37 -5.10 16 28 C 0.03 0.32 11.26 -16.65 -0.19 0.13 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.10 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 34 H 0.21 1.41 8.06 -52.49 -0.42 0.99 16 35 H 0.42 6.63 7.85 -40.82 -0.32 6.31 16 36 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.07 0.92 6.71 -51.93 -0.35 0.57 16 38 H 0.06 0.69 6.42 -51.93 -0.33 0.36 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.64 6.91 -51.93 -0.36 0.29 16 41 H 0.10 1.92 5.88 -51.93 -0.31 1.62 16 42 H 0.06 0.94 6.41 -51.93 -0.33 0.61 16 43 H 0.02 0.30 6.46 -51.93 -0.34 -0.04 16 44 H 0.09 1.29 7.93 -51.93 -0.41 0.88 16 45 H 0.05 0.74 7.06 -51.93 -0.37 0.38 16 46 H 0.37 7.77 5.76 -40.82 -0.24 7.53 16 47 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 48 H 0.18 1.65 8.06 -52.49 -0.42 1.23 16 LS Contribution 393.36 15.07 5.93 5.93 Total: -1.00 -36.70 393.36 -8.09 -44.79 By element: Atomic # 1 Polarization: 22.36 SS G_CDS: -7.12 Total: 15.24 kcal Atomic # 6 Polarization: 14.97 SS G_CDS: -1.37 Total: 13.60 kcal Atomic # 7 Polarization: -68.95 SS G_CDS: -0.98 Total: -69.92 kcal Atomic # 8 Polarization: -24.62 SS G_CDS: 0.17 Total: -24.45 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -4.71 Total: 14.81 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -36.70 -8.09 -44.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506041489.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.021 kcal (2) G-P(sol) polarization free energy of solvation -36.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds