Wall clock time and date at job start Tue Mar 31 2020 20:28:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46503 * 109.46943 * 2 1 4 4 C 1.35845 * 126.13129 * 269.97376 * 3 2 1 5 5 N 1.30175 * 108.99966 * 179.78845 * 4 3 2 6 6 C 1.35762 * 108.86515 * 0.37990 * 5 4 3 7 7 C 1.47322 * 126.23172 * 179.88328 * 6 5 4 8 8 O 1.21625 * 119.99995 * 179.68932 * 7 6 5 9 9 N 1.34779 * 120.00215 * 359.69316 * 7 6 5 10 10 C 1.46499 * 119.99730 * 180.02562 * 9 7 6 11 11 C 1.53003 * 109.46870 * 179.97438 * 10 9 7 12 12 H 1.09000 * 109.47130 * 294.99812 * 11 10 9 13 13 C 1.53006 * 109.47203 * 174.99853 * 11 10 9 14 14 N 1.46906 * 109.47132 * 54.99989 * 11 10 9 15 15 C 1.46893 * 111.00136 * 66.04414 * 14 11 10 16 16 C 1.46901 * 110.99853 * 190.00109 * 14 11 10 17 17 C 1.50701 * 109.46921 * 169.99766 * 16 14 11 18 18 O 1.21294 * 119.99849 * 0.02562 * 17 16 14 19 19 N 1.34780 * 119.99795 * 179.97438 * 17 16 14 20 20 C 1.37101 * 119.99707 * 180.02562 * 19 17 16 21 21 H 1.08002 * 119.99704 * 359.97438 * 20 19 17 22 22 C 1.38941 * 119.99927 * 180.02562 * 20 19 17 23 23 N 1.31413 * 120.00506 * 180.02562 * 22 20 19 24 24 Si 1.86804 * 120.00009 * 359.97438 * 22 20 19 25 25 H 1.48494 * 109.47177 * 89.99959 * 24 22 20 26 26 H 1.48505 * 109.47036 * 210.00243 * 24 22 20 27 27 H 1.48499 * 109.46776 * 329.99732 * 24 22 20 28 28 C 1.35371 * 126.13738 * 90.00466 * 3 2 1 29 29 H 1.09005 * 109.47404 * 59.99808 * 1 2 3 30 30 H 1.08994 * 109.47384 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46967 * 300.00060 * 1 2 3 32 32 H 1.08999 * 109.46637 * 239.99990 * 2 1 3 33 33 H 1.08994 * 109.47004 * 119.99942 * 2 1 3 34 34 H 1.07994 * 125.50360 * 0.02562 * 4 3 2 35 35 H 0.97000 * 120.00024 * 359.97438 * 9 7 6 36 36 H 1.08999 * 109.47772 * 59.99986 * 10 9 7 37 37 H 1.08995 * 109.47198 * 299.99666 * 10 9 7 38 38 H 1.09000 * 109.47044 * 300.00012 * 13 11 10 39 39 H 1.09002 * 109.46733 * 60.00059 * 13 11 10 40 40 H 1.09001 * 109.47141 * 179.97438 * 13 11 10 41 41 H 1.08999 * 109.47439 * 183.95618 * 15 14 11 42 42 H 1.08997 * 109.47257 * 303.95746 * 15 14 11 43 43 H 1.09006 * 109.46808 * 63.95302 * 15 14 11 44 44 H 1.09002 * 109.47401 * 49.99794 * 16 14 11 45 45 H 1.09001 * 109.46874 * 289.99807 * 16 14 11 46 46 H 0.96995 * 120.00011 * 0.02562 * 19 17 16 47 47 H 0.96993 * 120.00255 * 180.02562 * 23 22 20 48 48 H 1.08000 * 126.56165 * 359.97438 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2858 2.1363 -1.0972 5 7 2.6960 3.3107 -0.7137 6 6 2.7142 3.3478 0.6433 7 6 3.1184 4.4927 1.4776 8 8 3.0857 4.4032 2.6901 9 7 3.5245 5.6395 0.8974 10 6 3.9269 6.7777 1.7272 11 6 4.3407 7.9439 0.8273 12 1 5.2318 7.6690 0.2630 13 6 4.6414 9.1716 1.6893 14 7 3.2481 8.2552 -0.1041 15 6 2.0738 8.7678 0.6144 16 6 3.6896 9.2036 -1.1354 17 6 2.6333 9.3104 -2.2049 18 8 1.6128 8.6608 -2.1164 19 7 2.8221 10.1286 -3.2592 20 6 1.8609 10.2262 -4.2319 21 1 0.9526 9.6471 -4.1535 22 6 2.0557 11.0692 -5.3190 23 7 1.1343 11.1632 -6.2512 24 14 3.6271 12.0702 -5.4549 25 1 4.6499 11.2880 -6.1945 26 1 3.3476 13.3337 -6.1836 27 1 4.1326 12.3849 -4.0945 28 6 2.2845 2.1339 1.0933 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 2.1724 1.8155 -2.1221 35 1 3.5509 5.7108 -0.0696 36 1 4.7685 6.4889 2.3568 37 1 3.0905 7.0826 2.3561 38 1 3.7502 9.4465 2.2536 39 1 5.4521 8.9406 2.3803 40 1 4.9366 10.0023 1.0482 41 1 1.2565 8.9239 -0.0897 42 1 1.7679 8.0463 1.3720 43 1 2.3258 9.7136 1.0942 44 1 4.6210 8.8510 -1.5785 45 1 3.8499 10.1827 -0.6839 46 1 3.6380 10.6484 -3.3297 47 1 1.2705 11.7514 -7.0103 48 1 2.1772 1.8312 2.1244 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506041489.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:54 Heat of formation + Delta-G solvation = -23.372958 kcal Electronic energy + Delta-G solvation = -29113.264960 eV Core-core repulsion = 25010.778971 eV Total energy + Delta-G solvation = -4102.485989 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.12538 -40.82474 -40.16346 -38.72859 -35.99946 -35.92197 -35.18234 -33.71343 -32.16348 -31.25391 -30.59619 -29.42660 -27.51530 -27.01013 -25.34163 -24.66469 -23.72696 -21.81265 -21.35260 -21.09023 -20.71851 -20.06392 -18.79670 -17.93826 -17.16696 -17.13437 -16.95566 -16.74564 -16.45594 -16.27741 -15.67328 -15.53928 -15.41535 -14.94579 -14.88877 -14.85272 -14.63306 -14.57312 -14.28131 -14.11511 -13.84704 -13.56341 -13.45554 -13.11882 -12.97753 -12.87021 -12.79307 -12.42508 -12.35906 -12.27573 -12.21641 -11.95300 -11.73961 -11.43040 -11.33321 -11.00186 -10.74250 -10.32657 -10.19325 -10.04272 -9.54669 -9.13850 -8.37993 -5.98098 0.60625 1.31619 1.37695 1.45909 1.47227 1.74102 2.02018 2.25479 2.37664 2.60223 2.66867 3.18138 3.29887 3.51383 3.77485 3.79268 3.90812 4.04400 4.10565 4.19163 4.22699 4.32561 4.36459 4.41889 4.45158 4.46334 4.56378 4.65754 4.67605 4.70347 4.80786 4.83755 4.89171 5.02705 5.14402 5.21767 5.23000 5.32647 5.48400 5.54250 5.56974 5.93519 6.04796 6.13670 6.21857 6.58277 6.64285 6.93228 6.93485 7.30454 7.44927 8.03822 8.79998 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011293 B = 0.002650 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2478.751072 B =10561.929723 C =12457.086785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.094 3.906 3 N -0.448 5.448 4 C 0.189 3.811 5 N -0.501 5.501 6 C -0.102 4.102 7 C 0.595 3.405 8 O -0.588 6.588 9 N -0.699 5.699 10 C 0.132 3.868 11 C 0.071 3.929 12 H 0.105 0.895 13 C -0.179 4.179 14 N -0.530 5.530 15 C 0.028 3.972 16 C 0.055 3.945 17 C 0.452 3.548 18 O -0.603 6.603 19 N -0.594 5.594 20 C -0.323 4.323 21 H 0.053 0.947 22 C -0.018 4.018 23 N -0.938 5.938 24 Si 0.965 3.035 25 H -0.257 1.257 26 H -0.277 1.277 27 H -0.231 1.231 28 C 0.042 3.958 29 H 0.054 0.946 30 H 0.101 0.899 31 H 0.049 0.951 32 H 0.124 0.876 33 H 0.113 0.887 34 H 0.242 0.758 35 H 0.415 0.585 36 H 0.083 0.917 37 H 0.056 0.944 38 H 0.058 0.942 39 H 0.084 0.916 40 H 0.070 0.930 41 H 0.050 0.950 42 H 0.063 0.937 43 H 0.042 0.958 44 H 0.122 0.878 45 H 0.081 0.919 46 H 0.389 0.611 47 H 0.278 0.722 48 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.238 -18.571 15.750 26.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.026 4.026 3 N -0.129 5.129 4 C -0.095 4.095 5 N -0.220 5.220 6 C -0.230 4.230 7 C 0.382 3.618 8 O -0.470 6.470 9 N -0.348 5.348 10 C 0.008 3.992 11 C -0.037 4.037 12 H 0.123 0.877 13 C -0.238 4.238 14 N -0.254 5.254 15 C -0.120 4.120 16 C -0.076 4.076 17 C 0.240 3.760 18 O -0.487 6.487 19 N -0.237 5.237 20 C -0.452 4.452 21 H 0.071 0.929 22 C -0.216 4.216 23 N -0.579 5.579 24 Si 0.785 3.215 25 H -0.181 1.181 26 H -0.202 1.202 27 H -0.154 1.154 28 C -0.099 4.099 29 H 0.074 0.926 30 H 0.120 0.880 31 H 0.068 0.932 32 H 0.142 0.858 33 H 0.132 0.868 34 H 0.258 0.742 35 H 0.251 0.749 36 H 0.102 0.898 37 H 0.074 0.926 38 H 0.077 0.923 39 H 0.103 0.897 40 H 0.089 0.911 41 H 0.068 0.932 42 H 0.081 0.919 43 H 0.060 0.940 44 H 0.139 0.861 45 H 0.099 0.901 46 H 0.224 0.776 47 H 0.087 0.913 48 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 9.501 -18.873 15.714 26.332 hybrid contribution -0.054 0.939 -0.272 0.979 sum 9.448 -17.934 15.442 25.482 Atomic orbital electron populations 1.22181 0.93799 1.04449 1.02326 1.22341 0.95763 0.77134 1.07334 1.45822 1.47177 1.14337 1.05599 1.25835 1.01896 0.86595 0.95185 1.70614 1.19584 1.21201 1.10575 1.20603 1.15132 0.96303 0.90979 1.17223 0.76224 0.82173 0.86134 1.90715 1.57793 1.84037 1.14469 1.45717 1.65292 1.12049 1.11718 1.21481 1.00056 0.84787 0.92871 1.22089 0.93902 0.94674 0.93023 0.87669 1.22361 1.02995 0.97598 1.00886 1.61645 1.06153 1.44131 1.13468 1.22370 0.93636 0.98244 0.97759 1.21847 0.96760 0.97144 0.91831 1.20933 0.89427 0.81494 0.84133 1.90536 1.31849 1.47730 1.78585 1.42032 1.19185 1.41308 1.21141 1.18973 0.99818 1.25430 1.01016 0.92851 1.26107 1.02436 0.98618 0.94393 1.69809 1.36594 1.39596 1.11888 0.85366 0.77507 0.78083 0.80560 1.18139 1.20198 1.15410 1.22773 1.01529 0.91245 0.94389 0.92642 0.88034 0.93178 0.85766 0.86828 0.74206 0.74899 0.89846 0.92555 0.92269 0.89697 0.91119 0.93153 0.91872 0.93986 0.86052 0.90143 0.77588 0.91265 0.78128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.15 10.24 71.98 0.74 -0.41 16 2 C 0.09 0.54 6.84 86.38 0.59 1.13 16 3 N -0.45 -7.04 2.72 -528.40 -1.44 -8.48 16 4 C 0.19 3.78 12.55 180.10 2.26 6.04 16 5 N -0.50 -14.72 11.01 -188.83 -2.08 -16.80 16 6 C -0.10 -3.00 6.98 40.50 0.28 -2.71 16 7 C 0.59 19.33 7.81 86.63 0.68 20.01 16 8 O -0.59 -21.06 16.88 -4.11 -0.07 -21.13 16 9 N -0.70 -20.94 5.38 -466.46 -2.51 -23.45 16 10 C 0.13 3.26 4.85 86.38 0.42 3.68 16 11 C 0.07 1.56 2.47 44.92 0.11 1.67 16 12 H 0.11 1.99 7.93 -2.39 -0.02 1.98 16 13 C -0.18 -3.02 8.44 71.98 0.61 -2.41 16 14 N -0.53 -16.04 3.89 -901.59 -3.51 -19.55 16 15 C 0.03 0.91 8.32 127.69 1.06 1.97 16 16 C 0.06 1.69 5.02 85.56 0.43 2.12 16 17 C 0.45 20.63 7.51 87.66 0.66 21.29 16 18 O -0.60 -33.90 13.88 -3.07 -0.04 -33.95 16 19 N -0.59 -28.28 5.09 -306.98 -1.56 -29.85 16 20 C -0.32 -19.16 10.16 84.04 0.85 -18.30 16 21 H 0.05 3.78 7.39 -2.91 -0.02 3.76 16 22 C -0.02 -0.98 5.50 84.92 0.47 -0.52 16 23 N -0.94 -57.31 13.96 21.66 0.30 -57.01 16 24 Si 0.96 39.18 27.74 68.60 1.90 41.08 16 25 H -0.26 -9.88 7.11 99.48 0.71 -9.18 16 26 H -0.28 -11.19 7.11 99.48 0.71 -10.48 16 27 H -0.23 -7.85 6.52 99.48 0.65 -7.20 16 28 C 0.04 0.90 11.26 83.72 0.94 1.85 16 29 H 0.05 0.52 8.14 -2.38 -0.02 0.50 16 30 H 0.10 0.24 8.14 -2.39 -0.02 0.22 16 31 H 0.05 0.50 8.14 -2.38 -0.02 0.48 16 32 H 0.12 0.13 8.14 -2.39 -0.02 0.11 16 33 H 0.11 0.28 8.14 -2.39 -0.02 0.26 16 34 H 0.24 2.86 8.06 -2.91 -0.02 2.83 16 35 H 0.41 13.39 7.85 -92.71 -0.73 12.67 16 36 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.06 1.52 6.71 -2.39 -0.02 1.51 16 38 H 0.06 1.08 6.42 -2.39 -0.02 1.07 16 39 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.07 1.11 6.91 -2.39 -0.02 1.10 16 41 H 0.05 2.11 5.88 -2.39 -0.01 2.10 16 42 H 0.06 1.99 6.41 -2.39 -0.02 1.97 16 43 H 0.04 1.16 6.46 -2.38 -0.02 1.14 16 44 H 0.12 3.01 7.93 -2.39 -0.02 2.99 16 45 H 0.08 2.05 7.06 -2.39 -0.02 2.03 16 46 H 0.39 15.26 5.76 -92.71 -0.53 14.73 16 47 H 0.28 15.52 8.31 -92.71 -0.77 14.75 16 48 H 0.20 3.45 8.06 -2.91 -0.02 3.43 16 Total: -1.00 -88.84 393.36 0.77 -88.07 By element: Atomic # 1 Polarization: 45.97 SS G_CDS: -0.32 Total: 45.65 kcal Atomic # 6 Polarization: 25.31 SS G_CDS: 10.10 Total: 35.41 kcal Atomic # 7 Polarization: -144.33 SS G_CDS: -10.80 Total: -155.13 kcal Atomic # 8 Polarization: -54.96 SS G_CDS: -0.11 Total: -55.08 kcal Atomic # 14 Polarization: 39.18 SS G_CDS: 1.90 Total: 41.08 kcal Total: -88.84 0.77 -88.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506041489.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.694 kcal (2) G-P(sol) polarization free energy of solvation -88.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds