Wall clock time and date at job start Tue Mar 31 2020 20:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46493 * 109.47276 * 2 1 4 4 C 1.36745 * 127.13613 * 268.97455 * 3 2 1 5 5 C 1.50698 * 126.34625 * 0.03410 * 4 3 2 6 6 C 1.53004 * 109.47290 * 270.25088 * 5 4 3 7 7 C 1.50700 * 109.47024 * 180.02562 * 6 5 4 8 8 H 1.08002 * 119.99820 * 359.97438 * 7 6 5 9 9 C 1.37874 * 120.00280 * 180.02562 * 7 6 5 10 10 N 1.31507 * 120.00450 * 179.97438 * 9 7 6 11 11 Si 1.86805 * 119.99469 * 359.97438 * 9 7 6 12 12 H 1.48504 * 109.46921 * 90.00485 * 11 9 7 13 13 H 1.48500 * 109.47199 * 209.99793 * 11 9 7 14 14 H 1.48499 * 109.47473 * 330.00238 * 11 9 7 15 15 N 1.30296 * 107.30323 * 180.22957 * 4 3 2 16 16 N 1.28529 * 110.05835 * 359.77068 * 15 4 3 17 17 C 1.31218 * 109.85487 * 0.02562 * 16 15 4 18 18 N 1.38589 * 126.47186 * 179.97438 * 17 16 15 19 19 C 1.46895 * 110.99614 * 297.88984 * 18 17 16 20 20 C 1.53239 * 109.33775 * 187.25301 * 19 18 17 21 21 N 1.47083 * 108.52218 * 306.16819 * 20 19 18 22 22 C 1.34774 * 120.88885 * 231.18594 * 21 20 19 23 23 O 1.21516 * 119.99474 * 0.02562 * 22 21 20 24 24 O 1.34633 * 120.00588 * 180.02562 * 22 21 20 25 25 C 1.45199 * 117.00185 * 179.97438 * 24 22 21 26 26 C 1.47083 * 118.23354 * 51.46131 * 21 20 19 27 27 C 1.46895 * 110.99824 * 62.19157 * 18 17 16 28 28 H 1.09003 * 109.46877 * 301.32252 * 1 2 3 29 29 H 1.09005 * 109.47136 * 61.31610 * 1 2 3 30 30 H 1.08997 * 109.47343 * 181.31840 * 1 2 3 31 31 H 1.09003 * 109.47116 * 239.99742 * 2 1 3 32 32 H 1.09003 * 109.47069 * 120.00298 * 2 1 3 33 33 H 1.09000 * 109.47278 * 30.25379 * 5 4 3 34 34 H 1.09004 * 109.46983 * 150.25203 * 5 4 3 35 35 H 1.09000 * 109.47198 * 300.00340 * 6 5 4 36 36 H 1.08994 * 109.46864 * 60.00151 * 6 5 4 37 37 H 0.97001 * 119.99871 * 179.97438 * 10 9 7 38 38 H 1.09005 * 109.49217 * 67.29504 * 19 18 17 39 39 H 1.09000 * 109.52106 * 307.22957 * 19 18 17 40 40 H 1.09004 * 109.62952 * 186.46177 * 20 19 18 41 41 H 1.08997 * 109.63269 * 65.88410 * 20 19 18 42 42 H 1.08997 * 109.46914 * 180.02562 * 25 24 22 43 43 H 1.08992 * 109.47116 * 300.00200 * 25 24 22 44 44 H 1.09000 * 109.46910 * 60.00325 * 25 24 22 45 45 H 1.09002 * 109.62847 * 68.24664 * 26 21 20 46 46 H 1.08999 * 109.62860 * 188.83011 * 26 21 20 47 47 H 1.08996 * 109.49580 * 292.70906 * 27 18 17 48 48 H 1.08998 * 109.49384 * 52.76616 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.3119 2.1530 -1.0900 5 6 2.1928 1.7406 -2.5345 6 6 3.5100 1.1139 -2.9964 7 6 3.3910 0.7022 -4.4411 8 1 2.4680 0.8703 -4.9763 9 6 4.4599 0.1100 -5.0795 10 7 4.3560 -0.2498 -6.3402 11 14 6.0560 -0.1814 -4.1536 12 1 6.0180 -1.5194 -3.5106 13 1 7.1969 -0.1204 -5.1023 14 1 6.2220 0.8639 -3.1120 15 7 2.7178 3.3095 -0.6479 16 7 2.6962 3.3225 0.6372 17 6 2.2724 2.1652 1.0875 18 7 2.1168 1.8054 2.4168 19 6 3.4031 1.8404 3.1255 20 6 3.2219 1.2656 4.5344 21 7 2.1267 1.9899 5.1973 22 6 2.2930 2.5244 6.4233 23 8 3.3588 2.4114 6.9958 24 8 1.2782 3.1834 7.0137 25 6 1.5285 3.7322 8.3345 26 6 0.8432 2.1103 4.4891 27 6 1.1199 2.6568 3.0794 28 1 -0.3633 0.5343 0.8779 29 1 -0.3634 0.4933 -0.9016 30 1 -0.3634 -1.0273 0.0236 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.3878 1.0133 -2.6396 34 1 1.9732 2.6163 -3.1454 35 1 4.3150 1.8413 -2.8913 36 1 3.7295 0.2383 -2.3856 37 1 5.1082 -0.6661 -6.7893 38 1 3.7521 2.8707 3.1950 39 1 4.1353 1.2443 2.5809 40 1 4.1428 1.3939 5.1034 41 1 2.9734 0.2064 4.4687 42 1 0.6314 4.2358 8.6946 43 1 1.7918 2.9260 9.0190 44 1 2.3501 4.4466 8.2813 45 1 0.3705 1.1306 4.4190 46 1 0.1907 2.7972 5.0280 47 1 1.5008 3.6757 3.1496 48 1 0.1961 2.6528 2.5010 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001520981255.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:06 Heat of formation + Delta-G solvation = 13.784151 kcal Electronic energy + Delta-G solvation = -29891.687524 eV Core-core repulsion = 25790.812789 eV Total energy + Delta-G solvation = -4100.874736 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.80514 -40.99336 -39.02757 -36.77858 -35.66098 -35.26513 -33.98690 -31.93859 -31.69919 -30.51133 -29.56288 -28.22993 -26.93060 -25.46451 -24.31430 -23.98739 -22.82139 -21.61789 -21.07664 -20.18966 -19.89214 -18.57860 -17.56415 -17.12975 -16.91080 -16.82244 -16.28461 -15.96718 -15.26212 -15.10917 -14.98714 -14.53588 -14.35595 -14.26926 -14.21745 -13.48415 -13.39734 -13.17503 -13.05674 -12.87830 -12.69351 -12.49163 -12.35733 -12.06881 -11.85850 -11.72411 -11.61061 -11.43074 -11.24502 -11.15832 -11.12790 -10.87195 -10.59433 -10.34903 -10.15850 -9.93850 -9.85543 -9.39107 -9.33651 -8.92016 -8.65120 -8.62024 -6.13165 -4.12934 1.69802 1.88884 2.30841 2.44015 3.07577 3.24407 3.34176 3.39454 3.42891 3.52239 4.32888 4.38084 4.47330 4.63700 4.69321 4.77534 4.78283 4.80191 4.83786 4.91881 4.94196 4.98969 5.09299 5.15737 5.20786 5.25065 5.28552 5.34673 5.40724 5.46164 5.53590 5.62804 5.71185 5.80490 5.91696 5.93731 6.14265 6.18382 6.25901 6.35500 6.44418 6.72824 6.88633 7.06644 7.22410 7.29238 7.65295 7.86148 8.40554 8.89796 8.98066 9.48391 10.99590 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.021803 B = 0.002451 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.941745 B =11422.202355 C =11879.373506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.105 3.895 3 N -0.461 5.461 4 C 0.215 3.785 5 C -0.024 4.024 6 C -0.004 4.004 7 C -0.523 4.523 8 H 0.076 0.924 9 C 0.071 3.929 10 N -0.898 5.898 11 Si 0.876 3.124 12 H -0.277 1.277 13 H -0.286 1.286 14 H -0.265 1.265 15 N -0.296 5.296 16 N -0.310 5.310 17 C 0.317 3.683 18 N -0.458 5.458 19 C 0.051 3.949 20 C 0.136 3.864 21 N -0.596 5.596 22 C 0.651 3.349 23 O -0.572 6.572 24 O -0.371 6.371 25 C 0.056 3.944 26 C 0.120 3.880 27 C 0.053 3.947 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.078 0.922 31 H 0.102 0.898 32 H 0.096 0.904 33 H 0.077 0.923 34 H 0.095 0.905 35 H 0.025 0.975 36 H 0.009 0.991 37 H 0.265 0.735 38 H 0.061 0.939 39 H 0.094 0.906 40 H 0.106 0.894 41 H 0.084 0.916 42 H 0.103 0.897 43 H 0.063 0.937 44 H 0.063 0.937 45 H 0.082 0.918 46 H 0.101 0.899 47 H 0.060 0.940 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.545 1.364 26.822 28.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.018 4.018 3 N -0.154 5.154 4 C -0.052 4.052 5 C -0.063 4.063 6 C -0.042 4.042 7 C -0.561 4.561 8 H 0.094 0.906 9 C -0.131 4.131 10 N -0.536 5.536 11 Si 0.703 3.297 12 H -0.203 1.203 13 H -0.211 1.211 14 H -0.190 1.190 15 N -0.136 5.136 16 N -0.154 5.154 17 C -0.039 4.039 18 N -0.184 5.184 19 C -0.077 4.077 20 C 0.014 3.986 21 N -0.337 5.337 22 C 0.406 3.594 23 O -0.461 6.461 24 O -0.285 6.285 25 C -0.038 4.038 26 C -0.003 4.003 27 C -0.075 4.075 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.096 0.904 31 H 0.121 0.879 32 H 0.115 0.885 33 H 0.095 0.905 34 H 0.114 0.886 35 H 0.044 0.956 36 H 0.027 0.973 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.113 0.887 40 H 0.124 0.876 41 H 0.102 0.898 42 H 0.121 0.879 43 H 0.082 0.918 44 H 0.082 0.918 45 H 0.101 0.899 46 H 0.120 0.880 47 H 0.078 0.922 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -9.805 2.211 26.954 28.767 hybrid contribution 0.758 -0.836 0.447 1.214 sum -9.047 1.374 27.400 28.888 Atomic orbital electron populations 1.22093 0.93935 1.03206 1.02892 1.21879 0.95723 0.78878 1.05286 1.46444 1.49355 1.13762 1.05851 1.25677 0.98958 0.87989 0.92612 1.20264 1.01641 1.01967 0.82472 1.19547 0.92026 0.95342 0.97304 1.20992 1.01215 1.39971 0.93948 0.90580 1.24963 0.98522 0.94876 0.94706 1.69892 1.31865 1.41490 1.10394 0.86838 0.83678 0.79000 0.80196 1.20326 1.21141 1.18951 1.74084 1.19423 1.18065 1.02032 1.74514 1.18764 1.17633 1.04496 1.22028 1.05547 0.88729 0.87609 1.58486 1.10403 1.53293 0.96217 1.22593 0.89481 1.02259 0.93399 1.21809 0.90298 0.95606 0.90883 1.46955 1.15312 1.56776 1.14699 1.17996 0.82126 0.77445 0.81854 1.91004 1.26766 1.63804 1.64516 1.86220 1.40433 1.67418 1.34393 1.23211 1.03076 0.98444 0.79081 1.21981 0.84538 1.02809 0.90984 1.22620 0.95598 0.95293 0.94032 0.92109 0.91733 0.90362 0.87934 0.88543 0.90489 0.88616 0.95644 0.97322 0.92562 0.92092 0.88743 0.87609 0.89813 0.87884 0.91832 0.91783 0.89936 0.88045 0.92174 0.89095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.49 10.24 37.16 0.38 -1.11 16 2 C 0.11 1.18 6.62 -4.05 -0.03 1.16 16 3 N -0.46 -6.88 2.81 -114.08 -0.32 -7.20 16 4 C 0.21 3.89 7.32 -154.01 -1.13 2.76 16 5 C -0.02 -0.44 5.35 -27.88 -0.15 -0.59 16 6 C 0.00 -0.08 4.02 -27.88 -0.11 -0.20 16 7 C -0.52 -14.14 9.66 -34.44 -0.33 -14.48 16 8 H 0.08 2.17 7.99 -52.49 -0.42 1.75 16 9 C 0.07 2.01 5.47 -17.82 -0.10 1.92 16 10 N -0.90 -26.82 13.96 55.43 0.77 -26.05 16 11 Si 0.88 21.35 27.47 -169.99 -4.67 16.68 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 13 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 14 H -0.26 -6.40 6.54 56.52 0.37 -6.03 16 15 N -0.30 -5.96 12.18 32.99 0.40 -5.56 16 16 N -0.31 -5.66 12.19 30.32 0.37 -5.29 16 17 C 0.32 4.70 6.40 -318.86 -2.04 2.66 16 18 N -0.46 -5.06 4.64 -173.94 -0.81 -5.86 16 19 C 0.05 0.53 5.54 -3.70 -0.02 0.51 16 20 C 0.14 1.18 6.60 -3.60 -0.02 1.16 16 21 N -0.60 -5.51 3.00 -177.96 -0.53 -6.04 16 22 C 0.65 7.12 8.44 54.05 0.46 7.57 16 23 O -0.57 -7.84 15.59 -19.29 -0.30 -8.14 16 24 O -0.37 -3.33 9.24 -40.31 -0.37 -3.71 16 25 C 0.06 0.34 10.56 101.05 1.07 1.41 16 26 C 0.12 0.86 6.64 -3.36 -0.02 0.84 16 27 C 0.05 0.49 5.56 -3.46 -0.02 0.47 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.10 1.23 7.83 -51.93 -0.41 0.83 16 32 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 33 H 0.08 1.30 7.90 -51.93 -0.41 0.89 16 34 H 0.10 1.83 8.14 -51.93 -0.42 1.40 16 35 H 0.03 0.62 7.20 -51.93 -0.37 0.25 16 36 H 0.01 0.19 7.57 -51.93 -0.39 -0.20 16 37 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.09 1.00 8.09 -51.93 -0.42 0.58 16 40 H 0.11 0.98 7.06 -51.93 -0.37 0.62 16 41 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 46 H 0.10 0.63 6.98 -51.93 -0.36 0.27 16 47 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 48 H 0.09 0.80 8.09 -51.93 -0.42 0.38 16 LS Contribution 394.95 15.07 5.95 5.95 Total: -1.00 -34.99 394.95 -9.39 -44.38 By element: Atomic # 1 Polarization: 4.58 SS G_CDS: -7.81 Total: -3.23 kcal Atomic # 6 Polarization: 6.15 SS G_CDS: -2.07 Total: 4.09 kcal Atomic # 7 Polarization: -55.89 SS G_CDS: -0.12 Total: -56.01 kcal Atomic # 8 Polarization: -11.18 SS G_CDS: -0.67 Total: -11.85 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.67 Total: 16.68 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -34.99 -9.39 -44.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001520981255.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.160 kcal (2) G-P(sol) polarization free energy of solvation -34.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds