Wall clock time and date at job start Tue Mar 31 2020 20:51:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46493 * 109.47276 * 2 1 4 4 C 1.36745 * 127.13613 * 268.97455 * 3 2 1 5 5 C 1.50698 * 126.34625 * 0.03410 * 4 3 2 6 6 C 1.53004 * 109.47290 * 270.25088 * 5 4 3 7 7 C 1.50700 * 109.47024 * 180.02562 * 6 5 4 8 8 H 1.08002 * 119.99820 * 359.97438 * 7 6 5 9 9 C 1.37874 * 120.00280 * 180.02562 * 7 6 5 10 10 N 1.31507 * 120.00450 * 179.97438 * 9 7 6 11 11 Si 1.86805 * 119.99469 * 359.97438 * 9 7 6 12 12 H 1.48504 * 109.46921 * 90.00485 * 11 9 7 13 13 H 1.48500 * 109.47199 * 209.99793 * 11 9 7 14 14 H 1.48499 * 109.47473 * 330.00238 * 11 9 7 15 15 N 1.30296 * 107.30323 * 180.22957 * 4 3 2 16 16 N 1.28529 * 110.05835 * 359.77068 * 15 4 3 17 17 C 1.31218 * 109.85487 * 0.02562 * 16 15 4 18 18 N 1.38589 * 126.47186 * 179.97438 * 17 16 15 19 19 C 1.46895 * 110.99614 * 297.88984 * 18 17 16 20 20 C 1.53239 * 109.33775 * 187.25301 * 19 18 17 21 21 N 1.47083 * 108.52218 * 306.16819 * 20 19 18 22 22 C 1.34774 * 120.88885 * 231.18594 * 21 20 19 23 23 O 1.21516 * 119.99474 * 0.02562 * 22 21 20 24 24 O 1.34633 * 120.00588 * 180.02562 * 22 21 20 25 25 C 1.45199 * 117.00185 * 179.97438 * 24 22 21 26 26 C 1.47083 * 118.23354 * 51.46131 * 21 20 19 27 27 C 1.46895 * 110.99824 * 62.19157 * 18 17 16 28 28 H 1.09003 * 109.46877 * 301.32252 * 1 2 3 29 29 H 1.09005 * 109.47136 * 61.31610 * 1 2 3 30 30 H 1.08997 * 109.47343 * 181.31840 * 1 2 3 31 31 H 1.09003 * 109.47116 * 239.99742 * 2 1 3 32 32 H 1.09003 * 109.47069 * 120.00298 * 2 1 3 33 33 H 1.09000 * 109.47278 * 30.25379 * 5 4 3 34 34 H 1.09004 * 109.46983 * 150.25203 * 5 4 3 35 35 H 1.09000 * 109.47198 * 300.00340 * 6 5 4 36 36 H 1.08994 * 109.46864 * 60.00151 * 6 5 4 37 37 H 0.97001 * 119.99871 * 179.97438 * 10 9 7 38 38 H 1.09005 * 109.49217 * 67.29504 * 19 18 17 39 39 H 1.09000 * 109.52106 * 307.22957 * 19 18 17 40 40 H 1.09004 * 109.62952 * 186.46177 * 20 19 18 41 41 H 1.08997 * 109.63269 * 65.88410 * 20 19 18 42 42 H 1.08997 * 109.46914 * 180.02562 * 25 24 22 43 43 H 1.08992 * 109.47116 * 300.00200 * 25 24 22 44 44 H 1.09000 * 109.46910 * 60.00325 * 25 24 22 45 45 H 1.09002 * 109.62847 * 68.24664 * 26 21 20 46 46 H 1.08999 * 109.62860 * 188.83011 * 26 21 20 47 47 H 1.08996 * 109.49580 * 292.70906 * 27 18 17 48 48 H 1.08998 * 109.49384 * 52.76616 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.3119 2.1530 -1.0900 5 6 2.1928 1.7406 -2.5345 6 6 3.5100 1.1139 -2.9964 7 6 3.3910 0.7022 -4.4411 8 1 2.4680 0.8703 -4.9763 9 6 4.4599 0.1100 -5.0795 10 7 4.3560 -0.2498 -6.3402 11 14 6.0560 -0.1814 -4.1536 12 1 6.0180 -1.5194 -3.5106 13 1 7.1969 -0.1204 -5.1023 14 1 6.2220 0.8639 -3.1120 15 7 2.7178 3.3095 -0.6479 16 7 2.6962 3.3225 0.6372 17 6 2.2724 2.1652 1.0875 18 7 2.1168 1.8054 2.4168 19 6 3.4031 1.8404 3.1255 20 6 3.2219 1.2656 4.5344 21 7 2.1267 1.9899 5.1973 22 6 2.2930 2.5244 6.4233 23 8 3.3588 2.4114 6.9958 24 8 1.2782 3.1834 7.0137 25 6 1.5285 3.7322 8.3345 26 6 0.8432 2.1103 4.4891 27 6 1.1199 2.6568 3.0794 28 1 -0.3633 0.5343 0.8779 29 1 -0.3634 0.4933 -0.9016 30 1 -0.3634 -1.0273 0.0236 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.3878 1.0133 -2.6396 34 1 1.9732 2.6163 -3.1454 35 1 4.3150 1.8413 -2.8913 36 1 3.7295 0.2383 -2.3856 37 1 5.1082 -0.6661 -6.7893 38 1 3.7521 2.8707 3.1950 39 1 4.1353 1.2443 2.5809 40 1 4.1428 1.3939 5.1034 41 1 2.9734 0.2064 4.4687 42 1 0.6314 4.2358 8.6946 43 1 1.7918 2.9260 9.0190 44 1 2.3501 4.4466 8.2813 45 1 0.3705 1.1306 4.4190 46 1 0.1907 2.7972 5.0280 47 1 1.5008 3.6757 3.1496 48 1 0.1961 2.6528 2.5010 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001520981255.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:05 Heat of formation + Delta-G solvation = -7.834773 kcal Electronic energy + Delta-G solvation = -29892.624991 eV Core-core repulsion = 25790.812789 eV Total energy + Delta-G solvation = -4101.812203 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.08051 -41.76095 -39.85535 -37.56066 -36.83823 -36.30161 -35.60288 -33.80703 -32.44592 -31.48396 -30.88858 -29.09892 -27.85429 -27.02627 -25.09922 -24.92599 -23.77161 -23.17536 -22.18583 -21.43287 -20.85217 -19.38793 -18.99539 -18.39469 -17.97347 -17.63870 -17.39976 -17.05207 -16.40040 -16.01207 -15.92830 -15.77769 -15.53133 -15.17347 -15.00271 -14.91051 -14.83393 -14.52983 -14.06713 -13.86852 -13.63278 -13.52052 -13.19172 -13.02455 -12.99785 -12.80037 -12.60055 -12.55974 -12.45551 -12.31498 -12.15270 -12.01927 -11.85115 -11.82019 -11.70440 -11.54933 -11.41997 -11.10293 -10.77937 -10.27187 -10.03919 -9.81286 -8.30294 -6.34130 0.65709 0.99244 1.22901 1.31425 1.37017 1.46990 1.62769 1.70947 2.33585 2.52914 2.82991 3.04981 3.39114 3.58106 3.71378 3.72623 3.94950 3.97993 4.10575 4.12321 4.14124 4.24254 4.34951 4.36682 4.40498 4.41805 4.51032 4.53813 4.60242 4.65596 4.68986 4.73804 4.74890 4.78317 4.90588 4.93473 5.15487 5.16232 5.20894 5.22067 5.28980 5.40913 5.45907 5.49877 5.61569 6.10981 6.17906 6.24115 6.73045 7.09169 7.30471 7.65588 8.85508 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.021803 B = 0.002451 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.941745 B =11422.202355 C =11879.373506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.096 3.904 3 N -0.455 5.455 4 C 0.203 3.797 5 C -0.011 4.011 6 C 0.005 3.995 7 C -0.525 4.525 8 H 0.048 0.952 9 C 0.014 3.986 10 N -0.942 5.942 11 Si 0.939 3.061 12 H -0.260 1.260 13 H -0.284 1.284 14 H -0.263 1.263 15 N -0.332 5.332 16 N -0.346 5.346 17 C 0.339 3.661 18 N -0.445 5.445 19 C 0.055 3.945 20 C 0.144 3.856 21 N -0.597 5.597 22 C 0.647 3.353 23 O -0.607 6.607 24 O -0.370 6.370 25 C 0.050 3.950 26 C 0.128 3.872 27 C 0.054 3.946 28 H 0.067 0.933 29 H 0.049 0.951 30 H 0.103 0.897 31 H 0.096 0.904 32 H 0.120 0.880 33 H 0.097 0.903 34 H 0.086 0.914 35 H 0.008 0.992 36 H 0.020 0.980 37 H 0.267 0.733 38 H 0.038 0.962 39 H 0.094 0.906 40 H 0.099 0.901 41 H 0.108 0.892 42 H 0.137 0.863 43 H 0.062 0.938 44 H 0.056 0.944 45 H 0.107 0.893 46 H 0.115 0.885 47 H 0.040 0.960 48 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.618 -0.081 29.524 31.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.025 4.025 3 N -0.147 5.147 4 C -0.065 4.065 5 C -0.051 4.051 6 C -0.034 4.034 7 C -0.563 4.563 8 H 0.066 0.934 9 C -0.184 4.184 10 N -0.583 5.583 11 Si 0.763 3.237 12 H -0.184 1.184 13 H -0.210 1.210 14 H -0.187 1.187 15 N -0.172 5.172 16 N -0.190 5.190 17 C -0.018 4.018 18 N -0.171 5.171 19 C -0.073 4.073 20 C 0.022 3.978 21 N -0.337 5.337 22 C 0.403 3.597 23 O -0.498 6.498 24 O -0.284 6.284 25 C -0.044 4.044 26 C 0.006 3.994 27 C -0.074 4.074 28 H 0.086 0.914 29 H 0.069 0.931 30 H 0.122 0.878 31 H 0.114 0.886 32 H 0.138 0.862 33 H 0.115 0.885 34 H 0.105 0.895 35 H 0.026 0.974 36 H 0.039 0.961 37 H 0.076 0.924 38 H 0.057 0.943 39 H 0.113 0.887 40 H 0.117 0.883 41 H 0.126 0.874 42 H 0.155 0.845 43 H 0.081 0.919 44 H 0.075 0.925 45 H 0.125 0.875 46 H 0.133 0.867 47 H 0.058 0.942 48 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -10.919 0.759 29.666 31.621 hybrid contribution 0.996 -0.349 -0.341 1.109 sum -9.924 0.410 29.326 30.962 Atomic orbital electron populations 1.22067 0.92029 1.04788 1.02496 1.22250 0.97287 0.76821 1.06113 1.46621 1.48529 1.14724 1.04825 1.25269 1.00111 0.88358 0.92795 1.19970 1.00085 1.01825 0.83185 1.19376 0.93663 0.95377 0.94952 1.21285 1.00072 1.39078 0.95880 0.93360 1.25806 1.02128 0.94943 0.95483 1.70023 1.33110 1.43025 1.12121 0.85831 0.79349 0.79593 0.78902 1.18432 1.21024 1.18738 1.73983 1.20471 1.19538 1.03213 1.74447 1.20903 1.19768 1.03887 1.22379 1.02778 0.87680 0.88965 1.58786 1.10933 1.52951 0.94423 1.22572 0.89150 1.01145 0.94477 1.21769 0.90264 0.96554 0.89191 1.47090 1.16068 1.56192 1.14354 1.18196 0.81998 0.77334 0.82217 1.90979 1.28162 1.65126 1.65550 1.86227 1.39627 1.67004 1.35508 1.23496 1.04641 0.98386 0.77885 1.22089 0.83789 1.04379 0.89108 1.22701 0.95190 0.94125 0.95397 0.91414 0.93143 0.87808 0.88606 0.86213 0.88512 0.89521 0.97396 0.96120 0.92393 0.94320 0.88729 0.88308 0.87424 0.84527 0.91873 0.92494 0.87495 0.86671 0.94199 0.88090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.34 10.24 71.98 0.74 -1.60 16 2 C 0.10 1.89 6.62 86.38 0.57 2.46 16 3 N -0.45 -12.80 2.81 -514.85 -1.45 -14.24 16 4 C 0.20 7.27 7.32 137.64 1.01 8.28 16 5 C -0.01 -0.41 5.35 29.85 0.16 -0.25 16 6 C 0.00 0.22 4.02 29.85 0.12 0.34 16 7 C -0.53 -28.75 9.66 25.60 0.25 -28.50 16 8 H 0.05 2.84 7.99 -2.91 -0.02 2.82 16 9 C 0.01 0.81 5.47 84.66 0.46 1.27 16 10 N -0.94 -57.20 13.96 21.45 0.30 -56.90 16 11 Si 0.94 43.84 27.47 68.60 1.88 45.72 16 12 H -0.26 -11.32 7.11 99.48 0.71 -10.62 16 13 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 14 H -0.26 -12.10 6.54 99.48 0.65 -11.45 16 15 N -0.33 -13.46 12.18 -49.53 -0.60 -14.07 16 16 N -0.35 -12.62 12.19 -58.00 -0.71 -13.33 16 17 C 0.34 9.58 6.40 260.11 1.66 11.25 16 18 N -0.44 -8.82 4.64 -704.22 -3.27 -12.09 16 19 C 0.05 1.06 5.54 86.38 0.48 1.54 16 20 C 0.14 2.20 6.60 86.35 0.57 2.77 16 21 N -0.60 -9.66 3.00 -947.36 -2.85 -12.51 16 22 C 0.65 13.16 8.44 129.79 1.10 14.26 16 23 O -0.61 -16.22 15.59 19.79 0.31 -15.92 16 24 O -0.37 -5.92 9.24 -55.43 -0.51 -6.43 16 25 C 0.05 0.52 10.56 113.37 1.20 1.72 16 26 C 0.13 1.43 6.64 86.50 0.57 2.00 16 27 C 0.05 0.88 5.56 86.54 0.48 1.36 16 28 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.05 0.91 8.14 -2.38 -0.02 0.90 16 30 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.10 2.06 7.83 -2.39 -0.02 2.04 16 32 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.10 3.19 7.90 -2.39 -0.02 3.17 16 34 H 0.09 3.38 8.14 -2.39 -0.02 3.36 16 35 H 0.01 0.38 7.20 -2.39 -0.02 0.36 16 36 H 0.02 0.89 7.57 -2.39 -0.02 0.87 16 37 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 38 H 0.04 0.94 8.14 -2.38 -0.02 0.92 16 39 H 0.09 1.85 8.09 -2.39 -0.02 1.83 16 40 H 0.10 1.72 7.06 -2.38 -0.02 1.70 16 41 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.14 0.47 8.14 -2.39 -0.02 0.45 16 43 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 44 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 45 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 46 H 0.12 1.04 6.98 -2.39 -0.02 1.03 16 47 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 48 H 0.10 1.49 8.09 -2.39 -0.02 1.47 16 Total: -1.00 -77.61 394.95 3.37 -74.24 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: 0.89 Total: 8.62 kcal Atomic # 6 Polarization: 7.54 SS G_CDS: 9.37 Total: 16.90 kcal Atomic # 7 Polarization: -114.57 SS G_CDS: -8.57 Total: -123.14 kcal Atomic # 8 Polarization: -22.14 SS G_CDS: -0.20 Total: -22.35 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 1.88 Total: 45.72 kcal Total: -77.61 3.37 -74.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001520981255.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.409 kcal (2) G-P(sol) polarization free energy of solvation -77.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds