Wall clock time and date at job start Tue Mar 31 2020 19:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42903 * 113.99834 * 2 1 4 4 C 1.52996 * 109.47251 * 180.02562 * 3 2 1 5 5 N 1.46494 * 109.47145 * 176.98674 * 4 3 2 6 6 C 1.36740 * 127.13721 * 83.77775 * 5 4 3 7 7 C 1.50702 * 126.34808 * 0.02562 * 6 5 4 8 8 H 1.08996 * 110.28168 * 345.23537 * 7 6 5 9 9 C 1.54655 * 110.18346 * 107.36092 * 7 6 5 10 10 C 1.54625 * 101.68633 * 144.68088 * 9 7 6 11 11 C 1.51282 * 104.19269 * 334.98543 * 10 9 7 12 12 O 1.21286 * 124.94112 * 196.22441 * 11 10 9 13 13 N 1.34420 * 110.11902 * 16.25524 * 11 10 9 14 14 N 1.30293 * 107.30347 * 179.75406 * 6 5 4 15 15 N 1.28530 * 110.05757 * 0.24042 * 14 6 5 16 16 C 1.31217 * 109.85710 * 359.97438 * 15 14 6 17 17 N 1.38577 * 126.47291 * 180.02562 * 16 15 14 18 18 C 1.46900 * 110.99711 * 238.25189 * 17 16 15 19 19 C 1.46900 * 111.00210 * 2.20372 * 17 16 15 20 20 H 1.09000 * 109.47036 * 55.00211 * 19 17 16 21 21 C 1.53007 * 109.47210 * 295.00406 * 19 17 16 22 22 C 1.50700 * 109.47425 * 175.00249 * 19 17 16 23 23 H 1.08001 * 119.99843 * 0.02562 * 22 19 17 24 24 C 1.37871 * 120.00210 * 179.97438 * 22 19 17 25 25 N 1.31516 * 119.99894 * 0.02562 * 24 22 19 26 26 Si 1.86800 * 120.00162 * 179.97438 * 24 22 19 27 27 H 1.48497 * 109.46989 * 60.00730 * 26 24 22 28 28 H 1.48500 * 109.47168 * 180.02562 * 26 24 22 29 29 H 1.48498 * 109.47150 * 300.00645 * 26 24 22 30 30 H 1.09004 * 109.46928 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47026 * 299.98968 * 1 2 3 32 32 H 1.08987 * 109.47714 * 59.99649 * 1 2 3 33 33 H 1.09002 * 109.46931 * 60.00341 * 3 2 1 34 34 H 1.09003 * 109.47117 * 300.00527 * 3 2 1 35 35 H 1.08995 * 109.47533 * 56.98044 * 4 3 2 36 36 H 1.09012 * 109.47024 * 296.98521 * 4 3 2 37 37 H 1.09003 * 111.19288 * 26.50584 * 9 7 6 38 38 H 1.08995 * 110.85537 * 262.70592 * 9 7 6 39 39 H 1.09001 * 110.48845 * 216.30850 * 10 9 7 40 40 H 1.08995 * 110.59939 * 93.71734 * 10 9 7 41 41 H 0.96997 * 124.34858 * 180.40949 * 13 11 10 42 42 H 1.09002 * 109.47443 * 53.66732 * 18 17 16 43 43 H 1.09004 * 109.47404 * 173.66350 * 18 17 16 44 44 H 1.09004 * 109.47435 * 293.66331 * 18 17 16 45 45 H 1.08997 * 109.47167 * 179.97438 * 21 19 17 46 46 H 1.09000 * 109.46962 * 299.99850 * 21 19 17 47 47 H 1.08998 * 109.46827 * 59.99697 * 21 19 17 48 48 H 0.97001 * 120.00198 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 4.1310 2.5212 -0.0732 6 6 4.3636 3.3789 0.9660 7 6 4.0534 3.1265 2.4190 8 1 3.3803 2.2751 2.5192 9 6 5.3599 2.8766 3.2079 10 6 5.0355 3.5365 4.5681 11 6 3.9814 4.5698 4.2370 12 8 3.6579 5.4885 4.9599 13 7 3.4549 4.3215 3.0254 14 7 4.9086 4.4525 0.4679 15 7 5.0305 4.3344 -0.8062 16 6 4.5665 3.1693 -1.1923 17 7 4.5304 2.6862 -2.4906 18 6 3.1556 2.3612 -2.8932 19 6 5.1407 3.6415 -3.4250 20 1 6.1514 3.8791 -3.0932 21 6 4.3032 4.9213 -3.4654 22 6 5.1943 3.0325 -4.8024 23 1 4.8128 2.0357 -4.9673 24 6 5.7295 3.7483 -5.8522 25 7 6.1936 4.9623 -5.6515 26 14 5.7966 2.9931 -7.5595 27 1 4.4199 2.6685 -8.0116 28 1 6.4134 3.9588 -8.5040 29 1 6.6103 1.7515 -7.5199 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8901 32 1 -0.3634 0.5138 -0.8898 33 1 1.6886 1.8464 0.8900 34 1 1.6885 1.8465 -0.8900 35 1 3.8531 0.5980 -0.8625 36 1 3.8612 0.6910 0.9150 37 1 6.2087 3.3655 2.7297 38 1 5.5435 1.8088 3.3264 39 1 5.9232 4.0158 4.9810 40 1 4.6408 2.7995 5.2675 41 1 2.7652 4.8604 2.6075 42 1 2.5147 3.2277 -2.7301 43 1 3.1403 2.0918 -3.9494 44 1 2.7915 1.5229 -2.2992 45 1 4.7562 5.6303 -4.1584 46 1 3.2925 4.6838 -3.7973 47 1 4.2644 5.3618 -2.4692 48 1 6.5705 5.4658 -6.3900 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001555564356.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:54:17 Heat of formation + Delta-G solvation = 27.890706 kcal Electronic energy + Delta-G solvation = -30756.091244 eV Core-core repulsion = 26655.828215 eV Total energy + Delta-G solvation = -4100.263030 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.82547 -40.33387 -38.41956 -37.53503 -36.62821 -35.19316 -32.87824 -31.55126 -30.43583 -30.09694 -28.83474 -27.46565 -26.65324 -25.27316 -25.16486 -23.81261 -22.83405 -21.76377 -20.76103 -20.43988 -19.62418 -17.67030 -17.33887 -16.80682 -16.56457 -16.36987 -16.08980 -15.72898 -15.58284 -15.10186 -15.01711 -14.68749 -14.34825 -14.00320 -13.83536 -13.61003 -13.40844 -13.23084 -12.94842 -12.70889 -12.52409 -12.16434 -11.88867 -11.80512 -11.62699 -11.46928 -11.37216 -11.24172 -10.97277 -10.84658 -10.64481 -10.34162 -10.16478 -10.08145 -10.07230 -10.00157 -9.88946 -9.51466 -9.11790 -8.98489 -8.47204 -7.54559 -6.09933 -4.18045 1.85300 2.21103 2.45948 3.04938 3.25610 3.26129 3.31747 3.32647 3.48694 3.96352 4.13978 4.25616 4.33425 4.36610 4.48660 4.55058 4.56330 4.73175 4.85256 4.96128 4.99083 5.02737 5.14660 5.21441 5.29772 5.32127 5.38510 5.47880 5.52438 5.62237 5.78153 5.83967 5.96083 6.14831 6.35920 6.54079 6.60935 6.69017 6.77892 6.84032 6.99313 7.11620 7.31856 7.52386 7.65257 7.87123 8.05416 8.19517 8.33239 8.82700 9.15933 9.46902 10.96251 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.012405 B = 0.003462 C = 0.002879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2256.677541 B = 8086.104007 C = 9723.177956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.385 6.385 3 C 0.042 3.958 4 C 0.111 3.889 5 N -0.482 5.482 6 C 0.120 3.880 7 C 0.233 3.767 8 H 0.095 0.905 9 C -0.123 4.123 10 C -0.154 4.154 11 C 0.526 3.474 12 O -0.534 6.534 13 N -0.712 5.712 14 N -0.258 5.258 15 N -0.312 5.312 16 C 0.398 3.602 17 N -0.450 5.450 18 C 0.026 3.974 19 C 0.229 3.771 20 H 0.056 0.944 21 C -0.172 4.172 22 C -0.519 4.519 23 H 0.064 0.936 24 C 0.065 3.935 25 N -0.883 5.883 26 Si 0.900 3.100 27 H -0.277 1.277 28 H -0.287 1.287 29 H -0.276 1.276 30 H 0.090 0.910 31 H 0.042 0.958 32 H 0.045 0.955 33 H 0.054 0.946 34 H 0.064 0.936 35 H 0.114 0.886 36 H 0.100 0.900 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.106 0.894 40 H 0.106 0.894 41 H 0.413 0.587 42 H 0.031 0.969 43 H 0.100 0.900 44 H 0.054 0.946 45 H 0.092 0.908 46 H 0.020 0.980 47 H 0.039 0.961 48 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.113 -11.030 15.631 21.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.303 6.303 3 C -0.036 4.036 4 C -0.013 4.013 5 N -0.181 5.181 6 C -0.148 4.148 7 C 0.125 3.875 8 H 0.112 0.888 9 C -0.162 4.162 10 C -0.194 4.194 11 C 0.312 3.688 12 O -0.410 6.410 13 N -0.368 5.368 14 N -0.098 5.098 15 N -0.156 5.156 16 C 0.043 3.957 17 N -0.172 5.172 18 C -0.121 4.121 19 C 0.125 3.875 20 H 0.073 0.927 21 C -0.232 4.232 22 C -0.557 4.557 23 H 0.082 0.918 24 C -0.138 4.138 25 N -0.520 5.520 26 Si 0.728 3.272 27 H -0.203 1.203 28 H -0.212 1.212 29 H -0.201 1.201 30 H 0.109 0.891 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.133 0.867 36 H 0.119 0.881 37 H 0.114 0.886 38 H 0.114 0.886 39 H 0.125 0.875 40 H 0.124 0.876 41 H 0.252 0.748 42 H 0.050 0.950 43 H 0.119 0.881 44 H 0.073 0.927 45 H 0.110 0.890 46 H 0.040 0.960 47 H 0.058 0.942 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.093 -9.688 15.819 20.239 hybrid contribution -1.429 -0.671 -1.373 2.092 sum -9.522 -10.359 14.446 20.166 Atomic orbital electron populations 1.22793 0.80102 1.03138 1.00350 1.87812 1.20396 1.26520 1.95540 1.22957 0.93219 0.85737 1.01715 1.21558 0.91780 0.81535 1.06445 1.45981 1.49803 1.15695 1.06668 1.24296 1.08210 0.90491 0.91827 1.19635 0.95756 0.88347 0.83786 0.88777 1.22766 0.96667 1.02784 0.93955 1.22370 0.99867 0.98644 0.98564 1.20790 0.82113 0.85038 0.80833 1.90766 1.64370 1.32840 1.53066 1.46114 1.41764 1.29754 1.19155 1.73990 1.13655 1.19139 1.02979 1.75005 1.24943 1.12541 1.03148 1.23433 0.96262 0.87659 0.88354 1.59288 1.18425 1.43523 0.96003 1.22604 0.86622 0.98891 1.03962 1.19415 0.94121 0.85713 0.88268 0.92664 1.22429 0.98280 1.01568 1.00878 1.20968 1.41623 1.01401 0.91716 0.91797 1.24886 0.95005 0.94813 0.99066 1.69904 1.39717 1.10263 1.32143 0.86528 0.78287 0.78955 0.83434 1.20284 1.21217 1.20137 0.89123 0.93933 0.93632 0.92768 0.91799 0.86740 0.88134 0.88622 0.88613 0.87514 0.87556 0.74786 0.95029 0.88132 0.92736 0.88989 0.96049 0.94241 0.92603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.34 16 2 O -0.38 -3.65 10.70 -35.23 -0.38 -4.03 16 3 C 0.04 0.40 5.77 37.16 0.21 0.61 16 4 C 0.11 1.16 5.17 -4.05 -0.02 1.14 16 5 N -0.48 -6.88 2.81 -114.09 -0.32 -7.20 16 6 C 0.12 1.67 6.87 -154.01 -1.06 0.61 16 7 C 0.23 2.21 3.88 -68.07 -0.26 1.95 16 8 H 0.09 0.64 7.46 -51.93 -0.39 0.25 16 9 C -0.12 -0.96 6.67 -25.01 -0.17 -1.13 16 10 C -0.15 -1.19 6.86 -26.74 -0.18 -1.37 16 11 C 0.53 6.20 8.43 -10.86 -0.09 6.11 16 12 O -0.53 -8.53 18.03 5.55 0.10 -8.43 16 13 N -0.71 -7.67 5.86 -53.79 -0.32 -7.98 16 14 N -0.26 -4.79 12.17 32.99 0.40 -4.38 16 15 N -0.31 -6.67 9.24 30.31 0.28 -6.39 16 16 C 0.40 7.59 6.71 -318.88 -2.14 5.45 16 17 N -0.45 -9.14 4.75 -176.07 -0.84 -9.98 16 18 C 0.03 0.45 7.78 60.06 0.47 0.92 16 19 C 0.23 5.63 2.03 -68.86 -0.14 5.49 16 20 H 0.06 1.57 7.98 -51.93 -0.41 1.15 16 21 C -0.17 -4.21 8.27 37.16 0.31 -3.91 16 22 C -0.52 -13.41 7.79 -34.44 -0.27 -13.68 16 23 H 0.06 1.60 6.82 -52.49 -0.36 1.24 16 24 C 0.07 1.73 5.30 -17.82 -0.09 1.64 16 25 N -0.88 -24.62 11.32 55.43 0.63 -23.99 16 26 Si 0.90 20.43 29.54 -169.99 -5.02 15.41 16 27 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 28 H -0.29 -6.53 7.11 56.52 0.40 -6.12 16 29 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 30 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.04 0.25 8.14 -51.93 -0.42 -0.18 16 32 H 0.05 0.31 8.14 -51.94 -0.42 -0.12 16 33 H 0.05 0.45 8.09 -51.93 -0.42 0.03 16 34 H 0.06 0.69 6.13 -51.93 -0.32 0.37 16 35 H 0.11 1.32 7.23 -51.93 -0.38 0.94 16 36 H 0.10 0.78 7.84 -51.92 -0.41 0.37 16 37 H 0.10 0.95 7.92 -51.93 -0.41 0.54 16 38 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.11 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.41 4.52 8.96 -40.82 -0.37 4.15 16 42 H 0.03 0.55 6.84 -51.93 -0.36 0.19 16 43 H 0.10 1.84 6.27 -51.93 -0.33 1.51 16 44 H 0.05 0.76 4.26 -51.93 -0.22 0.54 16 45 H 0.09 2.49 6.07 -51.93 -0.32 2.18 16 46 H 0.02 0.48 6.62 -51.93 -0.34 0.14 16 47 H 0.04 0.95 5.80 -51.93 -0.30 0.65 16 48 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 379.76 15.07 5.72 5.72 Total: -1.00 -33.41 379.76 -9.06 -42.46 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -6.99 Total: 3.61 kcal Atomic # 6 Polarization: 7.51 SS G_CDS: -2.33 Total: 5.18 kcal Atomic # 7 Polarization: -59.77 SS G_CDS: -0.16 Total: -59.93 kcal Atomic # 8 Polarization: -12.18 SS G_CDS: -0.28 Total: -12.46 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.41 -9.06 -42.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001555564356.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.356 kcal (2) G-P(sol) polarization free energy of solvation -33.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds