Wall clock time and date at job start Tue Mar 31 2020 19:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42903 * 113.99834 * 2 1 4 4 C 1.52996 * 109.47251 * 180.02562 * 3 2 1 5 5 N 1.46494 * 109.47145 * 176.98674 * 4 3 2 6 6 C 1.36740 * 127.13721 * 83.77775 * 5 4 3 7 7 C 1.50702 * 126.34808 * 0.02562 * 6 5 4 8 8 H 1.08996 * 110.28168 * 345.23537 * 7 6 5 9 9 C 1.54655 * 110.18346 * 107.36092 * 7 6 5 10 10 C 1.54625 * 101.68633 * 144.68088 * 9 7 6 11 11 C 1.51282 * 104.19269 * 334.98543 * 10 9 7 12 12 O 1.21286 * 124.94112 * 196.22441 * 11 10 9 13 13 N 1.34420 * 110.11902 * 16.25524 * 11 10 9 14 14 N 1.30293 * 107.30347 * 179.75406 * 6 5 4 15 15 N 1.28530 * 110.05757 * 0.24042 * 14 6 5 16 16 C 1.31217 * 109.85710 * 359.97438 * 15 14 6 17 17 N 1.38577 * 126.47291 * 180.02562 * 16 15 14 18 18 C 1.46900 * 110.99711 * 238.25189 * 17 16 15 19 19 C 1.46900 * 111.00210 * 2.20372 * 17 16 15 20 20 H 1.09000 * 109.47036 * 55.00211 * 19 17 16 21 21 C 1.53007 * 109.47210 * 295.00406 * 19 17 16 22 22 C 1.50700 * 109.47425 * 175.00249 * 19 17 16 23 23 H 1.08001 * 119.99843 * 0.02562 * 22 19 17 24 24 C 1.37871 * 120.00210 * 179.97438 * 22 19 17 25 25 N 1.31516 * 119.99894 * 0.02562 * 24 22 19 26 26 Si 1.86800 * 120.00162 * 179.97438 * 24 22 19 27 27 H 1.48497 * 109.46989 * 60.00730 * 26 24 22 28 28 H 1.48500 * 109.47168 * 180.02562 * 26 24 22 29 29 H 1.48498 * 109.47150 * 300.00645 * 26 24 22 30 30 H 1.09004 * 109.46928 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47026 * 299.98968 * 1 2 3 32 32 H 1.08987 * 109.47714 * 59.99649 * 1 2 3 33 33 H 1.09002 * 109.46931 * 60.00341 * 3 2 1 34 34 H 1.09003 * 109.47117 * 300.00527 * 3 2 1 35 35 H 1.08995 * 109.47533 * 56.98044 * 4 3 2 36 36 H 1.09012 * 109.47024 * 296.98521 * 4 3 2 37 37 H 1.09003 * 111.19288 * 26.50584 * 9 7 6 38 38 H 1.08995 * 110.85537 * 262.70592 * 9 7 6 39 39 H 1.09001 * 110.48845 * 216.30850 * 10 9 7 40 40 H 1.08995 * 110.59939 * 93.71734 * 10 9 7 41 41 H 0.96997 * 124.34858 * 180.40949 * 13 11 10 42 42 H 1.09002 * 109.47443 * 53.66732 * 18 17 16 43 43 H 1.09004 * 109.47404 * 173.66350 * 18 17 16 44 44 H 1.09004 * 109.47435 * 293.66331 * 18 17 16 45 45 H 1.08997 * 109.47167 * 179.97438 * 21 19 17 46 46 H 1.09000 * 109.46962 * 299.99850 * 21 19 17 47 47 H 1.08998 * 109.46827 * 59.99697 * 21 19 17 48 48 H 0.97001 * 120.00198 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 4.1310 2.5212 -0.0732 6 6 4.3636 3.3789 0.9660 7 6 4.0534 3.1265 2.4190 8 1 3.3803 2.2751 2.5192 9 6 5.3599 2.8766 3.2079 10 6 5.0355 3.5365 4.5681 11 6 3.9814 4.5698 4.2370 12 8 3.6579 5.4885 4.9599 13 7 3.4549 4.3215 3.0254 14 7 4.9086 4.4525 0.4679 15 7 5.0305 4.3344 -0.8062 16 6 4.5665 3.1693 -1.1923 17 7 4.5304 2.6862 -2.4906 18 6 3.1556 2.3612 -2.8932 19 6 5.1407 3.6415 -3.4250 20 1 6.1514 3.8791 -3.0932 21 6 4.3032 4.9213 -3.4654 22 6 5.1943 3.0325 -4.8024 23 1 4.8128 2.0357 -4.9673 24 6 5.7295 3.7483 -5.8522 25 7 6.1936 4.9623 -5.6515 26 14 5.7966 2.9931 -7.5595 27 1 4.4199 2.6685 -8.0116 28 1 6.4134 3.9588 -8.5040 29 1 6.6103 1.7515 -7.5199 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8901 32 1 -0.3634 0.5138 -0.8898 33 1 1.6886 1.8464 0.8900 34 1 1.6885 1.8465 -0.8900 35 1 3.8531 0.5980 -0.8625 36 1 3.8612 0.6910 0.9150 37 1 6.2087 3.3655 2.7297 38 1 5.5435 1.8088 3.3264 39 1 5.9232 4.0158 4.9810 40 1 4.6408 2.7995 5.2675 41 1 2.7652 4.8604 2.6075 42 1 2.5147 3.2277 -2.7301 43 1 3.1403 2.0918 -3.9494 44 1 2.7915 1.5229 -2.2992 45 1 4.7562 5.6303 -4.1584 46 1 3.2925 4.6838 -3.7973 47 1 4.2644 5.3618 -2.4692 48 1 6.5705 5.4658 -6.3900 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001555564356.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:54:17 Heat of formation + Delta-G solvation = 3.756061 kcal Electronic energy + Delta-G solvation = -30757.137801 eV Core-core repulsion = 26655.828215 eV Total energy + Delta-G solvation = -4101.309586 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -44.12419 -41.22039 -39.24880 -39.00990 -37.64433 -36.31625 -34.79099 -32.27073 -31.73573 -31.07574 -30.59286 -28.55925 -27.33541 -27.21668 -26.60479 -24.69346 -23.87118 -23.15163 -21.67349 -21.44530 -21.16162 -18.72753 -18.41620 -18.05831 -17.64222 -17.42186 -17.18577 -17.02019 -16.74180 -16.37123 -16.18112 -15.78565 -15.59705 -15.19399 -14.94222 -14.72088 -14.49798 -14.35467 -14.09780 -13.61757 -13.52580 -13.37300 -13.14999 -12.98916 -12.93628 -12.67788 -12.65945 -12.57259 -12.39080 -12.19156 -12.10367 -12.03838 -11.98802 -11.43269 -11.21100 -11.02365 -10.92564 -10.75904 -10.71750 -10.50282 -10.28200 -9.08907 -8.12639 -6.27954 0.64954 1.07815 1.45657 1.47659 1.55023 1.56163 1.78190 2.34356 2.40365 2.65785 2.91309 3.16806 3.22891 3.38493 3.53117 3.62988 3.79979 3.83648 3.97902 4.05676 4.12912 4.22244 4.25738 4.41101 4.48004 4.51316 4.55638 4.59075 4.69386 4.74346 4.86404 4.88236 4.91973 4.97292 5.00907 5.07337 5.12685 5.15265 5.40273 5.56122 5.58752 5.69331 5.80330 5.94154 5.99219 6.04768 6.19571 6.53524 6.81125 7.15257 7.41148 7.80804 8.93598 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.012405 B = 0.003462 C = 0.002879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2256.677541 B = 8086.104007 C = 9723.177956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.395 6.395 3 C 0.048 3.952 4 C 0.102 3.898 5 N -0.469 5.469 6 C 0.156 3.844 7 C 0.232 3.768 8 H 0.141 0.859 9 C -0.117 4.117 10 C -0.141 4.141 11 C 0.516 3.484 12 O -0.585 6.585 13 N -0.714 5.714 14 N -0.307 5.307 15 N -0.362 5.362 16 C 0.378 3.622 17 N -0.453 5.453 18 C 0.033 3.967 19 C 0.242 3.758 20 H 0.006 0.994 21 C -0.153 4.153 22 C -0.527 4.527 23 H 0.072 0.928 24 C 0.014 3.986 25 N -0.918 5.918 26 Si 0.967 3.033 27 H -0.265 1.265 28 H -0.289 1.289 29 H -0.270 1.270 30 H 0.105 0.895 31 H 0.055 0.945 32 H 0.043 0.957 33 H 0.072 0.928 34 H 0.046 0.954 35 H 0.106 0.894 36 H 0.142 0.858 37 H 0.069 0.931 38 H 0.139 0.861 39 H 0.111 0.889 40 H 0.143 0.857 41 H 0.409 0.591 42 H 0.024 0.976 43 H 0.089 0.911 44 H 0.090 0.910 45 H 0.061 0.939 46 H 0.028 0.972 47 H 0.036 0.964 48 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.499 -14.572 17.238 24.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.313 6.313 3 C -0.030 4.030 4 C -0.020 4.020 5 N -0.166 5.166 6 C -0.114 4.114 7 C 0.124 3.876 8 H 0.158 0.842 9 C -0.155 4.155 10 C -0.181 4.181 11 C 0.305 3.695 12 O -0.465 6.465 13 N -0.367 5.367 14 N -0.145 5.145 15 N -0.206 5.206 16 C 0.021 3.979 17 N -0.176 5.176 18 C -0.114 4.114 19 C 0.136 3.864 20 H 0.024 0.976 21 C -0.213 4.213 22 C -0.565 4.565 23 H 0.090 0.910 24 C -0.186 4.186 25 N -0.557 5.557 26 Si 0.792 3.208 27 H -0.190 1.190 28 H -0.215 1.215 29 H -0.195 1.195 30 H 0.124 0.876 31 H 0.074 0.926 32 H 0.061 0.939 33 H 0.090 0.910 34 H 0.065 0.935 35 H 0.124 0.876 36 H 0.160 0.840 37 H 0.088 0.912 38 H 0.157 0.843 39 H 0.129 0.871 40 H 0.161 0.839 41 H 0.247 0.753 42 H 0.043 0.957 43 H 0.107 0.893 44 H 0.108 0.892 45 H 0.080 0.920 46 H 0.047 0.953 47 H 0.054 0.946 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.500 -13.280 17.434 23.886 hybrid contribution -1.059 0.397 -1.731 2.068 sum -10.559 -12.883 15.702 22.892 Atomic orbital electron populations 1.22988 0.78769 1.04368 1.00910 1.87793 1.21798 1.26099 1.95624 1.22817 0.92324 0.86051 1.01821 1.21929 0.92519 0.79284 1.08220 1.46058 1.48864 1.16739 1.04960 1.25198 1.04126 0.88637 0.93405 1.20208 0.97851 0.88981 0.80583 0.84184 1.22837 0.94483 1.05184 0.93042 1.22412 0.98553 0.97967 0.99133 1.21557 0.82392 0.85057 0.80486 1.90739 1.66073 1.35134 1.54563 1.46247 1.41345 1.30094 1.19019 1.73899 1.16703 1.21755 1.02156 1.74850 1.26291 1.14581 1.04914 1.23194 0.97765 0.88180 0.88788 1.59127 1.19968 1.42314 0.96166 1.22630 0.85028 0.99824 1.03899 1.18934 0.92069 0.86551 0.88852 0.97562 1.22192 0.98274 1.01066 0.99751 1.21289 1.41173 1.01693 0.92330 0.90953 1.25759 0.94624 0.95122 1.03054 1.70073 1.40736 1.11736 1.33123 0.85469 0.78765 0.78005 0.78536 1.18973 1.21483 1.19469 0.87647 0.92628 0.93854 0.90961 0.93538 0.87619 0.84033 0.91170 0.84330 0.87112 0.83900 0.75316 0.95703 0.89264 0.89153 0.92018 0.95280 0.94568 0.92835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 113.37 1.25 1.52 16 2 O -0.39 -6.01 10.70 -148.98 -1.59 -7.60 16 3 C 0.05 0.74 5.77 71.98 0.42 1.16 16 4 C 0.10 1.78 5.17 86.38 0.45 2.23 16 5 N -0.47 -12.52 2.81 -514.86 -1.45 -13.97 16 6 C 0.16 4.10 6.87 137.64 0.95 5.05 16 7 C 0.23 3.55 3.88 44.76 0.17 3.72 16 8 H 0.14 1.01 7.46 -2.39 -0.02 0.99 16 9 C -0.12 -1.36 6.67 31.71 0.21 -1.14 16 10 C -0.14 -1.66 6.86 30.59 0.21 -1.45 16 11 C 0.52 11.33 8.43 87.90 0.74 12.08 16 12 O -0.58 -18.57 18.03 -3.05 -0.05 -18.63 16 13 N -0.71 -13.99 5.86 -442.68 -2.59 -16.58 16 14 N -0.31 -11.58 12.17 -49.54 -0.60 -12.19 16 15 N -0.36 -16.14 9.24 -58.01 -0.54 -16.68 16 16 C 0.38 14.59 6.71 260.11 1.75 16.33 16 17 N -0.45 -18.74 4.75 -710.98 -3.38 -22.12 16 18 C 0.03 1.11 7.78 127.69 0.99 2.10 16 19 C 0.24 12.43 2.03 44.17 0.09 12.52 16 20 H 0.01 0.39 7.98 -2.39 -0.02 0.37 16 21 C -0.15 -7.90 8.27 71.98 0.60 -7.30 16 22 C -0.53 -27.81 7.79 25.60 0.20 -27.61 16 23 H 0.07 3.62 6.82 -2.91 -0.02 3.60 16 24 C 0.01 0.76 5.30 84.65 0.45 1.21 16 25 N -0.92 -53.24 11.32 21.45 0.24 -53.00 16 26 Si 0.97 42.20 29.54 68.60 2.03 44.22 16 27 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16 28 H -0.29 -12.63 7.11 99.48 0.71 -11.93 16 29 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 30 H 0.11 0.79 8.14 -2.38 -0.02 0.77 16 31 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.04 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.07 0.88 8.09 -2.39 -0.02 0.86 16 34 H 0.05 0.89 6.13 -2.39 -0.01 0.88 16 35 H 0.11 2.12 7.23 -2.39 -0.02 2.10 16 36 H 0.14 1.36 7.84 -2.38 -0.02 1.34 16 37 H 0.07 1.24 7.92 -2.39 -0.02 1.22 16 38 H 0.14 0.51 8.14 -2.39 -0.02 0.49 16 39 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.14 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.41 8.57 8.96 -92.71 -0.83 7.74 16 42 H 0.02 0.86 6.84 -2.39 -0.02 0.84 16 43 H 0.09 3.23 6.27 -2.38 -0.01 3.21 16 44 H 0.09 2.38 4.26 -2.38 -0.01 2.37 16 45 H 0.06 3.54 6.07 -2.39 -0.01 3.52 16 46 H 0.03 1.38 6.62 -2.39 -0.02 1.37 16 47 H 0.04 1.85 5.80 -2.39 -0.01 1.84 16 48 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 Total: -1.00 -79.59 379.76 0.70 -78.89 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: 0.17 Total: 17.25 kcal Atomic # 6 Polarization: 11.94 SS G_CDS: 8.47 Total: 20.40 kcal Atomic # 7 Polarization: -126.22 SS G_CDS: -8.32 Total: -134.53 kcal Atomic # 8 Polarization: -24.58 SS G_CDS: -1.65 Total: -26.23 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.22 kcal Total: -79.59 0.70 -78.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001555564356.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.646 kcal (2) G-P(sol) polarization free energy of solvation -79.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds