Wall clock time and date at job start Tue Mar 31 2020 19:54:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42904 * 113.99883 * 2 1 4 4 C 1.53001 * 109.46689 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.46411 * 179.97438 * 4 3 2 6 6 C 1.36746 * 127.13497 * 87.63986 * 5 4 3 7 7 C 1.50700 * 126.34862 * 359.97438 * 6 5 4 8 8 H 1.09001 * 110.28401 * 14.19640 * 7 6 5 9 9 C 1.54478 * 110.24534 * 252.22158 * 7 6 5 10 10 C 1.54632 * 101.76131 * 215.58218 * 9 7 6 11 11 C 1.51283 * 104.25699 * 24.57955 * 10 9 7 12 12 O 1.21280 * 124.94463 * 164.00769 * 11 10 9 13 13 N 1.34420 * 110.11659 * 344.14420 * 11 10 9 14 14 N 1.30290 * 107.30164 * 179.73116 * 6 5 4 15 15 N 1.28528 * 110.05688 * 0.25734 * 14 6 5 16 16 C 1.31217 * 109.86024 * 0.02562 * 15 14 6 17 17 N 1.38586 * 126.47261 * 179.97438 * 16 15 14 18 18 C 1.46902 * 110.99735 * 69.33229 * 17 16 15 19 19 C 1.46896 * 111.00061 * 305.38039 * 17 16 15 20 20 H 1.09000 * 109.47218 * 60.00052 * 19 17 16 21 21 C 1.53003 * 109.47137 * 300.00049 * 19 17 16 22 22 C 1.50699 * 109.47347 * 180.02562 * 19 17 16 23 23 H 1.07997 * 119.99579 * 4.37512 * 22 19 17 24 24 C 1.37871 * 120.00351 * 184.37822 * 22 19 17 25 25 N 1.31522 * 119.99951 * 5.70225 * 24 22 19 26 26 Si 1.86795 * 120.00100 * 185.69365 * 24 22 19 27 27 H 1.48510 * 109.46977 * 94.93858 * 26 24 22 28 28 H 1.48504 * 109.47182 * 214.93510 * 26 24 22 29 29 H 1.48496 * 109.47424 * 334.93838 * 26 24 22 30 30 H 1.09005 * 109.47208 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47012 * 299.99884 * 1 2 3 32 32 H 1.08998 * 109.47023 * 60.00144 * 1 2 3 33 33 H 1.09000 * 109.46641 * 59.99913 * 3 2 1 34 34 H 1.08997 * 109.46638 * 300.00121 * 3 2 1 35 35 H 1.08995 * 109.47287 * 60.00470 * 4 3 2 36 36 H 1.08995 * 109.47076 * 299.99350 * 4 3 2 37 37 H 1.08998 * 110.96989 * 333.70254 * 9 7 6 38 38 H 1.09002 * 110.97077 * 97.43111 * 9 7 6 39 39 H 1.09001 * 110.48517 * 143.47739 * 10 9 7 40 40 H 1.08994 * 110.48608 * 265.98865 * 10 9 7 41 41 H 0.96998 * 124.35055 * 179.43341 * 13 11 10 42 42 H 1.09002 * 109.46996 * 53.85591 * 18 17 16 43 43 H 1.09000 * 109.46530 * 173.85280 * 18 17 16 44 44 H 1.08996 * 109.47523 * 293.85597 * 18 17 16 45 45 H 1.08998 * 109.46970 * 185.57472 * 21 19 17 46 46 H 1.08993 * 109.47115 * 305.57334 * 21 19 17 47 47 H 1.09001 * 109.46791 * 65.58048 * 21 19 17 48 48 H 0.96995 * 120.00072 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 4.1313 2.5230 -0.0013 6 6 4.4264 3.2957 1.0876 7 6 4.1980 2.9291 2.5314 8 1 3.9933 1.8624 2.6226 9 6 3.0254 3.7500 3.1123 10 6 3.4957 3.9862 4.5662 11 6 5.0029 3.8778 4.4925 12 8 5.7699 4.2649 5.3485 13 7 5.3684 3.2925 3.3389 14 7 4.9466 4.4055 0.6457 15 7 4.9948 4.3890 -0.6386 16 6 4.5034 3.2586 -1.0886 17 7 4.3897 2.8806 -2.4171 18 6 5.7110 2.6301 -3.0081 19 6 3.6499 3.8876 -3.1894 20 1 4.1759 4.8411 -3.1411 21 6 2.2458 4.0495 -2.6034 22 6 3.5461 3.4428 -4.6255 23 1 3.9231 2.4744 -4.9194 24 6 2.9698 4.2720 -5.5642 25 7 2.6128 5.4934 -5.2318 26 14 2.6964 3.6609 -7.3080 27 1 1.3127 3.1375 -7.4379 28 1 2.8931 4.7820 -8.2620 29 1 3.6659 2.5776 -7.6107 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.6885 1.8463 0.8900 34 1 1.6885 1.8463 -0.8900 35 1 3.8567 0.6439 -0.8908 36 1 3.8574 0.6436 0.8891 37 1 2.9098 4.6948 2.5812 38 1 2.0988 3.1764 3.0898 39 1 3.1980 4.9779 4.9071 40 1 3.0918 3.2195 5.2272 41 1 6.2874 3.1279 3.0759 42 1 6.2526 1.9097 -2.3950 43 1 5.5888 2.2310 -4.0150 44 1 6.2720 3.5635 -3.0528 45 1 1.6643 4.7219 -3.2341 46 1 1.7557 3.0770 -2.5605 47 1 2.3173 4.4653 -1.5984 48 1 2.2071 6.0767 -5.8921 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001555564357.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:54:20 Heat of formation + Delta-G solvation = 17.409811 kcal Electronic energy + Delta-G solvation = -30862.119481 eV Core-core repulsion = 26761.401966 eV Total energy + Delta-G solvation = -4100.717515 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.84209 -40.35068 -38.17829 -37.27653 -36.60139 -35.06446 -32.97175 -31.57334 -30.47805 -29.96848 -29.36960 -27.31332 -26.49866 -25.56439 -24.47046 -23.60390 -22.97095 -21.82867 -20.76439 -20.50017 -19.66905 -17.58773 -17.31491 -16.76311 -16.49558 -16.32369 -16.12894 -15.76993 -15.37854 -15.17460 -14.82557 -14.64619 -14.28882 -13.94581 -13.73243 -13.59206 -13.40850 -13.22146 -12.97125 -12.51022 -12.45845 -12.26555 -11.88401 -11.78404 -11.59113 -11.37360 -11.30557 -11.26748 -11.03296 -10.80840 -10.50034 -10.45594 -10.29161 -10.19331 -10.09442 -10.00501 -9.86031 -9.47691 -9.18839 -8.68115 -8.61613 -7.84778 -6.16448 -4.21729 1.81092 2.18767 2.45964 3.01899 3.22449 3.24174 3.30301 3.32346 3.58480 3.93433 4.11240 4.25613 4.32669 4.45956 4.52758 4.55253 4.69958 4.77239 4.98106 5.02812 5.14410 5.17155 5.22338 5.37338 5.38378 5.48120 5.48853 5.55561 5.59205 5.65844 5.79834 5.97862 6.20887 6.23983 6.50155 6.52365 6.57615 6.66815 6.75341 6.80858 6.85009 6.94014 7.25917 7.45424 7.64891 7.75797 8.01387 8.04003 8.33012 8.82424 9.01846 9.43152 10.92012 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.013301 B = 0.003503 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2104.525943 B = 7990.355283 C = 9137.975804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.388 6.388 3 C 0.047 3.953 4 C 0.117 3.883 5 N -0.464 5.464 6 C 0.131 3.869 7 C 0.231 3.769 8 H 0.098 0.902 9 C -0.124 4.124 10 C -0.154 4.154 11 C 0.526 3.474 12 O -0.533 6.533 13 N -0.712 5.712 14 N -0.264 5.264 15 N -0.313 5.313 16 C 0.394 3.606 17 N -0.474 5.474 18 C 0.051 3.949 19 C 0.225 3.775 20 H 0.029 0.971 21 C -0.126 4.126 22 C -0.515 4.515 23 H 0.067 0.933 24 C 0.065 3.935 25 N -0.886 5.886 26 Si 0.899 3.101 27 H -0.281 1.281 28 H -0.286 1.286 29 H -0.273 1.273 30 H 0.088 0.912 31 H 0.041 0.959 32 H 0.047 0.953 33 H 0.051 0.949 34 H 0.072 0.928 35 H 0.114 0.886 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.107 0.893 40 H 0.107 0.893 41 H 0.414 0.586 42 H 0.043 0.957 43 H 0.092 0.908 44 H 0.036 0.964 45 H 0.081 0.919 46 H 0.032 0.968 47 H 0.005 0.995 48 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.761 -10.822 14.469 18.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.306 6.306 3 C -0.031 4.031 4 C -0.007 4.007 5 N -0.159 5.159 6 C -0.137 4.137 7 C 0.123 3.877 8 H 0.115 0.885 9 C -0.163 4.163 10 C -0.194 4.194 11 C 0.313 3.687 12 O -0.410 6.410 13 N -0.368 5.368 14 N -0.105 5.105 15 N -0.156 5.156 16 C 0.039 3.961 17 N -0.201 5.201 18 C -0.097 4.097 19 C 0.121 3.879 20 H 0.047 0.953 21 C -0.184 4.184 22 C -0.553 4.553 23 H 0.085 0.915 24 C -0.138 4.138 25 N -0.523 5.523 26 Si 0.726 3.274 27 H -0.207 1.207 28 H -0.212 1.212 29 H -0.197 1.197 30 H 0.106 0.894 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.090 0.910 35 H 0.132 0.868 36 H 0.113 0.887 37 H 0.113 0.887 38 H 0.113 0.887 39 H 0.126 0.874 40 H 0.125 0.875 41 H 0.253 0.747 42 H 0.062 0.938 43 H 0.110 0.890 44 H 0.055 0.945 45 H 0.099 0.901 46 H 0.051 0.949 47 H 0.024 0.976 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.089 -9.662 14.836 17.972 hybrid contribution -0.354 -0.736 -1.345 1.574 sum -3.443 -10.398 13.490 17.377 Atomic orbital electron populations 1.22770 0.80173 1.02890 1.00447 1.87769 1.20371 1.26829 1.95594 1.22823 0.92686 0.85523 1.02076 1.21483 0.92497 0.80765 1.05949 1.46217 1.47489 1.15867 1.06364 1.24441 1.07153 0.91246 0.90849 1.19646 0.86861 0.99468 0.81749 0.88472 1.22740 0.96752 1.01987 0.94779 1.22364 0.93301 1.05768 0.97957 1.20772 0.91389 0.75623 0.80936 1.90765 1.59038 1.49267 1.41906 1.46104 1.09067 1.61830 1.19764 1.74001 1.15754 1.16752 1.03999 1.74845 1.20988 1.17503 1.02251 1.22995 0.96013 0.87380 0.89715 1.59326 1.18791 1.47706 0.94305 1.22211 0.86992 0.99941 1.00519 1.19433 0.89581 0.88058 0.90853 0.95301 1.21776 0.99797 0.99755 0.97109 1.21013 1.40297 1.02881 0.91128 0.91505 1.24916 0.95456 0.94536 0.98928 1.69962 1.41260 1.06170 1.34925 0.86474 0.78589 0.78448 0.83853 1.20667 1.21206 1.19723 0.89363 0.94045 0.93446 0.93063 0.90989 0.86788 0.88695 0.88657 0.88654 0.87447 0.87515 0.74697 0.93801 0.88960 0.94507 0.90061 0.94933 0.97552 0.92670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.40 16 2 O -0.39 -4.32 10.70 -35.23 -0.38 -4.70 16 3 C 0.05 0.53 6.26 37.16 0.23 0.76 16 4 C 0.12 1.34 6.31 -4.04 -0.03 1.31 16 5 N -0.46 -6.80 2.81 -114.09 -0.32 -7.12 16 6 C 0.13 1.84 6.86 -154.01 -1.06 0.79 16 7 C 0.23 2.23 3.91 -68.16 -0.27 1.96 16 8 H 0.10 0.68 7.06 -51.93 -0.37 0.31 16 9 C -0.12 -1.00 6.68 -25.10 -0.17 -1.16 16 10 C -0.15 -1.20 6.86 -26.74 -0.18 -1.38 16 11 C 0.53 6.19 8.43 -10.86 -0.09 6.10 16 12 O -0.53 -8.46 18.03 5.56 0.10 -8.36 16 13 N -0.71 -7.62 5.86 -53.88 -0.32 -7.94 16 14 N -0.26 -4.84 12.17 32.99 0.40 -4.44 16 15 N -0.31 -6.58 12.01 30.32 0.36 -6.21 16 16 C 0.39 7.47 5.18 -318.87 -1.65 5.82 16 17 N -0.47 -9.57 4.66 -176.08 -0.82 -10.39 16 18 C 0.05 0.94 9.14 60.07 0.55 1.49 16 19 C 0.22 5.41 1.85 -68.87 -0.13 5.28 16 20 H 0.03 0.82 8.01 -51.93 -0.42 0.40 16 21 C -0.13 -2.91 8.82 37.16 0.33 -2.58 16 22 C -0.51 -13.09 7.79 -34.44 -0.27 -13.36 16 23 H 0.07 1.66 6.58 -52.49 -0.35 1.31 16 24 C 0.06 1.69 5.21 -17.82 -0.09 1.59 16 25 N -0.89 -24.40 11.90 55.43 0.66 -23.74 16 26 Si 0.90 20.20 29.54 -169.99 -5.02 15.18 16 27 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 28 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 29 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 30 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.07 1.03 6.91 -51.93 -0.36 0.67 16 35 H 0.11 1.41 8.14 -51.93 -0.42 0.99 16 36 H 0.09 0.80 7.23 -51.93 -0.38 0.42 16 37 H 0.09 0.97 7.90 -51.93 -0.41 0.56 16 38 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.11 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.11 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.41 4.43 8.96 -40.82 -0.37 4.07 16 42 H 0.04 0.70 8.10 -51.93 -0.42 0.28 16 43 H 0.09 1.72 6.40 -51.93 -0.33 1.39 16 44 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.08 2.07 6.54 -51.93 -0.34 1.73 16 46 H 0.03 0.69 6.92 -51.93 -0.36 0.34 16 47 H 0.01 0.12 7.43 -51.93 -0.39 -0.26 16 48 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 392.98 15.07 5.92 5.92 Total: -1.00 -32.95 392.98 -8.53 -41.48 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -7.42 Total: 2.30 kcal Atomic # 6 Polarization: 9.74 SS G_CDS: -1.71 Total: 8.03 kcal Atomic # 7 Polarization: -59.82 SS G_CDS: -0.03 Total: -59.85 kcal Atomic # 8 Polarization: -12.78 SS G_CDS: -0.28 Total: -13.06 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -32.95 -8.53 -41.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001555564357.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.888 kcal (2) G-P(sol) polarization free energy of solvation -32.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds