Wall clock time and date at job start Tue Mar 31 2020 19:54:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42904 * 113.99883 * 2 1 4 4 C 1.53001 * 109.46689 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.46411 * 179.97438 * 4 3 2 6 6 C 1.36746 * 127.13497 * 87.63986 * 5 4 3 7 7 C 1.50700 * 126.34862 * 359.97438 * 6 5 4 8 8 H 1.09001 * 110.28401 * 14.19640 * 7 6 5 9 9 C 1.54478 * 110.24534 * 252.22158 * 7 6 5 10 10 C 1.54632 * 101.76131 * 215.58218 * 9 7 6 11 11 C 1.51283 * 104.25699 * 24.57955 * 10 9 7 12 12 O 1.21280 * 124.94463 * 164.00769 * 11 10 9 13 13 N 1.34420 * 110.11659 * 344.14420 * 11 10 9 14 14 N 1.30290 * 107.30164 * 179.73116 * 6 5 4 15 15 N 1.28528 * 110.05688 * 0.25734 * 14 6 5 16 16 C 1.31217 * 109.86024 * 0.02562 * 15 14 6 17 17 N 1.38586 * 126.47261 * 179.97438 * 16 15 14 18 18 C 1.46902 * 110.99735 * 69.33229 * 17 16 15 19 19 C 1.46896 * 111.00061 * 305.38039 * 17 16 15 20 20 H 1.09000 * 109.47218 * 60.00052 * 19 17 16 21 21 C 1.53003 * 109.47137 * 300.00049 * 19 17 16 22 22 C 1.50699 * 109.47347 * 180.02562 * 19 17 16 23 23 H 1.07997 * 119.99579 * 4.37512 * 22 19 17 24 24 C 1.37871 * 120.00351 * 184.37822 * 22 19 17 25 25 N 1.31522 * 119.99951 * 5.70225 * 24 22 19 26 26 Si 1.86795 * 120.00100 * 185.69365 * 24 22 19 27 27 H 1.48510 * 109.46977 * 94.93858 * 26 24 22 28 28 H 1.48504 * 109.47182 * 214.93510 * 26 24 22 29 29 H 1.48496 * 109.47424 * 334.93838 * 26 24 22 30 30 H 1.09005 * 109.47208 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47012 * 299.99884 * 1 2 3 32 32 H 1.08998 * 109.47023 * 60.00144 * 1 2 3 33 33 H 1.09000 * 109.46641 * 59.99913 * 3 2 1 34 34 H 1.08997 * 109.46638 * 300.00121 * 3 2 1 35 35 H 1.08995 * 109.47287 * 60.00470 * 4 3 2 36 36 H 1.08995 * 109.47076 * 299.99350 * 4 3 2 37 37 H 1.08998 * 110.96989 * 333.70254 * 9 7 6 38 38 H 1.09002 * 110.97077 * 97.43111 * 9 7 6 39 39 H 1.09001 * 110.48517 * 143.47739 * 10 9 7 40 40 H 1.08994 * 110.48608 * 265.98865 * 10 9 7 41 41 H 0.96998 * 124.35055 * 179.43341 * 13 11 10 42 42 H 1.09002 * 109.46996 * 53.85591 * 18 17 16 43 43 H 1.09000 * 109.46530 * 173.85280 * 18 17 16 44 44 H 1.08996 * 109.47523 * 293.85597 * 18 17 16 45 45 H 1.08998 * 109.46970 * 185.57472 * 21 19 17 46 46 H 1.08993 * 109.47115 * 305.57334 * 21 19 17 47 47 H 1.09001 * 109.46791 * 65.58048 * 21 19 17 48 48 H 0.96995 * 120.00072 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 4.1313 2.5230 -0.0013 6 6 4.4264 3.2957 1.0876 7 6 4.1980 2.9291 2.5314 8 1 3.9933 1.8624 2.6226 9 6 3.0254 3.7500 3.1123 10 6 3.4957 3.9862 4.5662 11 6 5.0029 3.8778 4.4925 12 8 5.7699 4.2649 5.3485 13 7 5.3684 3.2925 3.3389 14 7 4.9466 4.4055 0.6457 15 7 4.9948 4.3890 -0.6386 16 6 4.5034 3.2586 -1.0886 17 7 4.3897 2.8806 -2.4171 18 6 5.7110 2.6301 -3.0081 19 6 3.6499 3.8876 -3.1894 20 1 4.1759 4.8411 -3.1411 21 6 2.2458 4.0495 -2.6034 22 6 3.5461 3.4428 -4.6255 23 1 3.9231 2.4744 -4.9194 24 6 2.9698 4.2720 -5.5642 25 7 2.6128 5.4934 -5.2318 26 14 2.6964 3.6609 -7.3080 27 1 1.3127 3.1375 -7.4379 28 1 2.8931 4.7820 -8.2620 29 1 3.6659 2.5776 -7.6107 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.6885 1.8463 0.8900 34 1 1.6885 1.8463 -0.8900 35 1 3.8567 0.6439 -0.8908 36 1 3.8574 0.6436 0.8891 37 1 2.9098 4.6948 2.5812 38 1 2.0988 3.1764 3.0898 39 1 3.1980 4.9779 4.9071 40 1 3.0918 3.2195 5.2272 41 1 6.2874 3.1279 3.0759 42 1 6.2526 1.9097 -2.3950 43 1 5.5888 2.2310 -4.0150 44 1 6.2720 3.5635 -3.0528 45 1 1.6643 4.7219 -3.2341 46 1 1.7557 3.0770 -2.5605 47 1 2.3173 4.4653 -1.5984 48 1 2.2071 6.0767 -5.8921 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001555564357.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:54:19 Heat of formation + Delta-G solvation = -6.813472 kcal Electronic energy + Delta-G solvation = -30863.169881 eV Core-core repulsion = 26761.401966 eV Total energy + Delta-G solvation = -4101.767916 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.14634 -41.23151 -39.00439 -38.85662 -37.65296 -36.20151 -34.87452 -32.29379 -31.83104 -31.33433 -30.74054 -28.46186 -27.36440 -27.20897 -26.12804 -24.60654 -23.97453 -23.28155 -21.65464 -21.53387 -21.16079 -18.65920 -18.48689 -18.14970 -17.71801 -17.50558 -17.00390 -16.91614 -16.77100 -16.22865 -16.17104 -15.84323 -15.43748 -15.35084 -14.91837 -14.73904 -14.42289 -14.21960 -14.06883 -13.83654 -13.60420 -13.38288 -13.12534 -12.96158 -12.86922 -12.70235 -12.61717 -12.57497 -12.33454 -12.22398 -12.14533 -12.09650 -12.03303 -11.63407 -11.20545 -11.09663 -11.02230 -10.68544 -10.59372 -10.43329 -10.02514 -9.56586 -8.17094 -6.29053 0.57396 1.04660 1.44623 1.45897 1.55662 1.56472 1.69936 2.35458 2.40086 2.68013 2.88859 3.15073 3.21326 3.36128 3.56215 3.63439 3.80566 3.90688 4.00409 4.09895 4.19372 4.28117 4.34195 4.50851 4.54284 4.59489 4.60795 4.66128 4.67706 4.75697 4.83119 4.84896 4.88043 4.91285 4.97365 5.01319 5.08184 5.11071 5.34754 5.46721 5.61730 5.68300 5.78088 5.91761 5.94446 6.08033 6.10903 6.57849 6.82490 7.14905 7.39996 7.67612 8.91824 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.013301 B = 0.003503 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2104.525943 B = 7990.355283 C = 9137.975804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.397 6.397 3 C 0.053 3.947 4 C 0.111 3.889 5 N -0.453 5.453 6 C 0.164 3.836 7 C 0.230 3.770 8 H 0.144 0.856 9 C -0.119 4.119 10 C -0.141 4.141 11 C 0.518 3.482 12 O -0.583 6.583 13 N -0.712 5.712 14 N -0.308 5.308 15 N -0.358 5.358 16 C 0.374 3.626 17 N -0.465 5.465 18 C 0.054 3.946 19 C 0.235 3.765 20 H -0.024 1.024 21 C -0.104 4.104 22 C -0.522 4.522 23 H 0.073 0.927 24 C 0.016 3.984 25 N -0.921 5.921 26 Si 0.964 3.036 27 H -0.274 1.274 28 H -0.289 1.289 29 H -0.261 1.261 30 H 0.106 0.894 31 H 0.061 0.939 32 H 0.034 0.966 33 H 0.076 0.924 34 H 0.036 0.964 35 H 0.104 0.896 36 H 0.139 0.861 37 H 0.069 0.931 38 H 0.136 0.864 39 H 0.112 0.888 40 H 0.143 0.857 41 H 0.411 0.589 42 H 0.074 0.926 43 H 0.090 0.910 44 H 0.013 0.987 45 H 0.052 0.948 46 H 0.046 0.954 47 H 0.005 0.995 48 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.327 -13.944 16.038 21.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.315 6.315 3 C -0.025 4.025 4 C -0.011 4.011 5 N -0.147 5.147 6 C -0.105 4.105 7 C 0.122 3.878 8 H 0.161 0.839 9 C -0.157 4.157 10 C -0.180 4.180 11 C 0.306 3.694 12 O -0.463 6.463 13 N -0.366 5.366 14 N -0.147 5.147 15 N -0.201 5.201 16 C 0.017 3.983 17 N -0.191 5.191 18 C -0.093 4.093 19 C 0.130 3.870 20 H -0.006 1.006 21 C -0.163 4.163 22 C -0.560 4.560 23 H 0.091 0.909 24 C -0.184 4.184 25 N -0.560 5.560 26 Si 0.789 3.211 27 H -0.200 1.200 28 H -0.215 1.215 29 H -0.185 1.185 30 H 0.124 0.876 31 H 0.079 0.921 32 H 0.053 0.947 33 H 0.094 0.906 34 H 0.055 0.945 35 H 0.122 0.878 36 H 0.157 0.843 37 H 0.088 0.912 38 H 0.154 0.846 39 H 0.130 0.870 40 H 0.161 0.839 41 H 0.249 0.751 42 H 0.092 0.908 43 H 0.109 0.891 44 H 0.032 0.968 45 H 0.071 0.929 46 H 0.065 0.935 47 H 0.024 0.976 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.667 -12.823 16.400 21.335 hybrid contribution 0.151 0.206 -1.731 1.750 sum -4.516 -12.617 14.669 19.869 Atomic orbital electron populations 1.22972 0.78883 1.04252 1.00835 1.87752 1.21756 1.26349 1.95635 1.22680 0.92443 0.85774 1.01575 1.21807 0.92658 0.78921 1.07693 1.46273 1.46772 1.16668 1.05005 1.25328 1.03325 0.89414 0.92450 1.20209 0.86971 1.02225 0.78417 0.83900 1.22812 0.97599 1.01163 0.94156 1.22402 0.89844 1.07365 0.98414 1.21505 0.93048 0.74494 0.80340 1.90739 1.60707 1.51272 1.43630 1.46223 1.09439 1.61300 1.19653 1.73919 1.18514 1.19290 1.03025 1.74726 1.22372 1.19156 1.03881 1.22779 0.97682 0.88083 0.89779 1.59217 1.19143 1.45808 0.94966 1.22213 0.86518 0.99493 1.01110 1.19067 0.89818 0.86731 0.91417 1.00580 1.21495 0.98954 0.99655 0.96177 1.21309 1.39807 1.02980 0.91936 0.90874 1.25733 0.95220 0.94525 1.02900 1.70108 1.42281 1.07433 1.36183 0.85453 0.78809 0.77930 0.78926 1.19988 1.21546 1.18549 0.87602 0.92050 0.94685 0.90574 0.94537 0.87770 0.84310 0.91224 0.84598 0.87018 0.83905 0.75101 0.90767 0.89148 0.96806 0.92859 0.93503 0.97633 0.92809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 11.01 113.37 1.25 1.62 16 2 O -0.40 -7.48 10.70 -148.98 -1.59 -9.08 16 3 C 0.05 1.04 6.26 71.98 0.45 1.49 16 4 C 0.11 2.17 6.31 86.38 0.55 2.72 16 5 N -0.45 -12.46 2.81 -514.86 -1.45 -13.91 16 6 C 0.16 4.32 6.86 137.64 0.94 5.27 16 7 C 0.23 3.55 3.91 44.70 0.17 3.73 16 8 H 0.14 1.05 7.06 -2.39 -0.02 1.04 16 9 C -0.12 -1.43 6.68 31.65 0.21 -1.22 16 10 C -0.14 -1.66 6.86 30.59 0.21 -1.45 16 11 C 0.52 11.23 8.43 87.90 0.74 11.97 16 12 O -0.58 -18.29 18.03 -3.03 -0.05 -18.34 16 13 N -0.71 -13.73 5.86 -442.98 -2.60 -16.33 16 14 N -0.31 -11.39 12.17 -49.54 -0.60 -12.00 16 15 N -0.36 -15.61 12.01 -58.00 -0.70 -16.31 16 16 C 0.37 14.29 5.18 260.11 1.35 15.64 16 17 N -0.46 -19.11 4.66 -711.00 -3.31 -22.42 16 18 C 0.05 2.04 9.14 127.69 1.17 3.21 16 19 C 0.24 11.77 1.85 44.17 0.08 11.85 16 20 H -0.02 -1.41 8.01 -2.39 -0.02 -1.43 16 21 C -0.10 -4.98 8.82 71.98 0.64 -4.34 16 22 C -0.52 -27.07 7.79 25.60 0.20 -26.87 16 23 H 0.07 3.63 6.58 -2.91 -0.02 3.61 16 24 C 0.02 0.84 5.21 84.65 0.44 1.28 16 25 N -0.92 -52.55 11.90 21.45 0.26 -52.29 16 26 Si 0.96 41.67 29.54 68.60 2.03 43.70 16 27 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 28 H -0.29 -12.59 7.11 99.48 0.71 -11.88 16 29 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 30 H 0.11 1.10 8.14 -2.38 -0.02 1.08 16 31 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.03 0.57 8.14 -2.39 -0.02 0.56 16 33 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.04 0.99 6.91 -2.39 -0.02 0.97 16 35 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 36 H 0.14 1.53 7.23 -2.39 -0.02 1.52 16 37 H 0.07 1.26 7.90 -2.39 -0.02 1.24 16 38 H 0.14 0.62 8.14 -2.39 -0.02 0.60 16 39 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.14 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.41 8.31 8.96 -92.71 -0.83 7.48 16 42 H 0.07 2.32 8.10 -2.39 -0.02 2.30 16 43 H 0.09 3.40 6.40 -2.39 -0.02 3.39 16 44 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 45 H 0.05 2.82 6.54 -2.39 -0.02 2.80 16 46 H 0.05 2.04 6.92 -2.39 -0.02 2.02 16 47 H 0.00 0.22 7.43 -2.39 -0.02 0.20 16 48 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 Total: -1.00 -77.92 392.98 0.53 -77.39 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: 0.15 Total: 14.70 kcal Atomic # 6 Polarization: 16.49 SS G_CDS: 8.40 Total: 24.89 kcal Atomic # 7 Polarization: -124.86 SS G_CDS: -8.40 Total: -133.26 kcal Atomic # 8 Polarization: -25.77 SS G_CDS: -1.65 Total: -27.42 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 2.03 Total: 43.70 kcal Total: -77.92 0.53 -77.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001555564357.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.581 kcal (2) G-P(sol) polarization free energy of solvation -77.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds