Wall clock time and date at job start Tue Mar 31 2020 19:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42903 * 113.99732 * 2 1 4 4 C 1.53003 * 109.47261 * 179.97438 * 3 2 1 5 5 N 1.46496 * 109.47206 * 177.65249 * 4 3 2 6 6 C 1.36732 * 127.13572 * 83.18244 * 5 4 3 7 7 C 1.50699 * 126.34784 * 0.02562 * 6 5 4 8 8 H 1.08995 * 110.28899 * 14.18628 * 7 6 5 9 9 C 1.54310 * 110.31023 * 252.35862 * 7 6 5 10 10 C 1.54628 * 101.84669 * 215.85168 * 9 7 6 11 11 C 1.51277 * 104.19667 * 24.58082 * 10 9 7 12 12 O 1.21276 * 124.94477 * 163.72561 * 11 10 9 13 13 N 1.34422 * 110.11832 * 343.75231 * 11 10 9 14 14 N 1.30298 * 107.30591 * 179.75174 * 6 5 4 15 15 N 1.28530 * 110.05087 * 0.24398 * 14 6 5 16 16 C 1.31216 * 109.86391 * 359.97438 * 15 14 6 17 17 N 1.38580 * 126.47655 * 180.02562 * 16 15 14 18 18 C 1.46898 * 110.99575 * 256.94126 * 17 16 15 19 19 C 1.46900 * 110.99739 * 20.89593 * 17 16 15 20 20 H 1.09002 * 109.46617 * 299.99496 * 19 17 16 21 21 C 1.52993 * 109.47382 * 59.99797 * 19 17 16 22 22 C 1.50703 * 109.46731 * 180.02562 * 19 17 16 23 23 H 1.08002 * 120.00335 * 0.02562 * 22 19 17 24 24 C 1.37882 * 119.99749 * 179.97438 * 22 19 17 25 25 N 1.31515 * 119.99606 * 179.97438 * 24 22 19 26 26 Si 1.86800 * 119.99925 * 0.02562 * 24 22 19 27 27 H 1.48501 * 109.46915 * 90.00197 * 26 24 22 28 28 H 1.48499 * 109.47009 * 209.99607 * 26 24 22 29 29 H 1.48498 * 109.47049 * 329.99971 * 26 24 22 30 30 H 1.08996 * 109.46437 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47437 * 300.00883 * 1 2 3 32 32 H 1.09000 * 109.46596 * 60.00340 * 1 2 3 33 33 H 1.09001 * 109.47424 * 59.99595 * 3 2 1 34 34 H 1.09004 * 109.47262 * 299.99316 * 3 2 1 35 35 H 1.09003 * 109.46711 * 57.64742 * 4 3 2 36 36 H 1.09004 * 109.46807 * 297.65744 * 4 3 2 37 37 H 1.09001 * 111.11357 * 97.61825 * 9 7 6 38 38 H 1.08999 * 110.77741 * 333.93477 * 9 7 6 39 39 H 1.09000 * 110.48193 * 265.90811 * 10 9 7 40 40 H 1.09000 * 110.59687 * 143.31845 * 10 9 7 41 41 H 0.97004 * 124.35595 * 179.59048 * 13 11 10 42 42 H 1.08998 * 109.47483 * 66.58039 * 18 17 16 43 43 H 1.09006 * 109.46566 * 186.57912 * 18 17 16 44 44 H 1.09000 * 109.47594 * 306.57178 * 18 17 16 45 45 H 1.09009 * 109.46852 * 60.00184 * 21 19 17 46 46 H 1.09001 * 109.47099 * 179.97438 * 21 19 17 47 47 H 1.08995 * 109.47258 * 300.00056 * 21 19 17 48 48 H 0.97000 * 119.99412 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1848 0.0006 5 7 4.1312 2.5220 -0.0559 6 6 4.3517 3.3724 0.9918 7 6 4.0253 3.1097 2.4394 8 1 3.8145 2.0515 2.5932 9 6 2.8153 3.9606 2.8786 10 6 3.1867 4.3109 4.3382 11 6 4.6958 4.2109 4.3713 12 8 5.4037 4.6730 5.2408 13 7 5.1381 3.5358 3.2963 14 7 4.9017 4.4497 0.5074 15 7 5.0379 4.3406 -0.7660 16 6 4.5789 3.1781 -1.1655 17 7 4.5575 2.7041 -2.4676 18 6 3.2081 2.7994 -3.0403 19 6 5.5352 3.4147 -3.3025 20 1 5.2982 4.4785 -3.3139 21 6 6.9390 3.2110 -2.7292 22 6 5.4826 2.8737 -4.7081 23 1 4.7917 2.0816 -4.9564 24 6 6.3159 3.3907 -5.6774 25 7 6.2704 2.9182 -6.9039 26 14 7.5105 4.7612 -5.2480 27 1 8.8001 4.1729 -4.8051 28 1 7.7390 5.6113 -6.4439 29 1 6.9420 5.5885 -4.1537 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8898 32 1 -0.3632 0.5138 -0.8900 33 1 1.6885 1.8465 0.8899 34 1 1.6887 1.8464 -0.8901 35 1 3.8546 0.6078 -0.8673 36 1 3.8596 0.6808 0.9112 37 1 1.8928 3.3814 2.8390 38 1 2.7345 4.8611 2.2697 39 1 2.7416 3.5935 5.0276 40 1 2.8660 5.3235 4.5830 41 1 6.0728 3.3567 3.1089 42 1 2.9333 3.8484 -3.1504 43 1 3.1930 2.3154 -4.0169 44 1 2.4968 2.3049 -2.3788 45 1 7.1760 2.1471 -2.7179 46 1 7.6645 3.7379 -3.3491 47 1 6.9767 3.6026 -1.7127 48 1 6.8563 3.2822 -7.5858 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001555564358.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:54:23 Heat of formation + Delta-G solvation = 32.215694 kcal Electronic energy + Delta-G solvation = -30782.493872 eV Core-core repulsion = 26682.418387 eV Total energy + Delta-G solvation = -4100.075484 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.98200 -40.42359 -38.41509 -37.55879 -36.70800 -35.26567 -32.86665 -31.64566 -30.67457 -30.31300 -29.97438 -27.55456 -26.68739 -25.45708 -24.60192 -23.83541 -23.08156 -21.96532 -20.81923 -20.53963 -19.68481 -17.80090 -17.41335 -16.98858 -16.75524 -16.47903 -16.38663 -15.94719 -15.42739 -15.33608 -15.10505 -14.73746 -14.43887 -14.02430 -13.83791 -13.81948 -13.47699 -13.32686 -13.07150 -12.82240 -12.69503 -12.35873 -12.21063 -12.03696 -11.89967 -11.71485 -11.46092 -11.30510 -11.21592 -10.84619 -10.73666 -10.41652 -10.23186 -10.16221 -10.14602 -10.06267 -9.61250 -9.55635 -9.45307 -8.93565 -8.66841 -7.85178 -6.18881 -4.20682 1.71418 2.04799 2.39115 2.91371 3.16452 3.25711 3.37188 3.39308 3.42763 3.83319 4.03462 4.18318 4.26513 4.32973 4.33636 4.44863 4.51869 4.61920 4.78018 4.89941 4.94655 4.98158 5.05518 5.14098 5.26983 5.30636 5.32555 5.37563 5.42485 5.51968 5.66806 5.82562 5.90526 6.04153 6.29747 6.36730 6.40807 6.46934 6.50314 6.61972 6.69934 6.76747 6.84704 7.03653 7.35300 7.51152 7.78073 7.98734 8.42234 8.80757 8.93730 9.41301 10.92645 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011173 B = 0.003869 C = 0.003004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2505.433895 B = 7234.850350 C = 9319.253921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.384 6.384 3 C 0.046 3.954 4 C 0.110 3.890 5 N -0.471 5.471 6 C 0.128 3.872 7 C 0.232 3.768 8 H 0.097 0.903 9 C -0.123 4.123 10 C -0.154 4.154 11 C 0.526 3.474 12 O -0.532 6.532 13 N -0.712 5.712 14 N -0.260 5.260 15 N -0.317 5.317 16 C 0.392 3.608 17 N -0.451 5.451 18 C 0.041 3.959 19 C 0.199 3.801 20 H 0.026 0.974 21 C -0.148 4.148 22 C -0.519 4.519 23 H 0.085 0.915 24 C 0.079 3.921 25 N -0.893 5.893 26 Si 0.880 3.120 27 H -0.277 1.277 28 H -0.295 1.295 29 H -0.261 1.261 30 H 0.090 0.910 31 H 0.042 0.958 32 H 0.045 0.955 33 H 0.055 0.945 34 H 0.062 0.938 35 H 0.118 0.882 36 H 0.100 0.900 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.107 0.893 40 H 0.107 0.893 41 H 0.415 0.585 42 H 0.035 0.965 43 H 0.102 0.898 44 H 0.048 0.952 45 H 0.054 0.946 46 H 0.048 0.952 47 H 0.039 0.961 48 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.695 -5.050 18.512 23.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.302 6.302 3 C -0.032 4.032 4 C -0.014 4.014 5 N -0.169 5.169 6 C -0.140 4.140 7 C 0.123 3.877 8 H 0.115 0.885 9 C -0.162 4.162 10 C -0.194 4.194 11 C 0.312 3.688 12 O -0.408 6.408 13 N -0.368 5.368 14 N -0.100 5.100 15 N -0.162 5.162 16 C 0.037 3.963 17 N -0.175 5.175 18 C -0.106 4.106 19 C 0.094 3.906 20 H 0.043 0.957 21 C -0.206 4.206 22 C -0.557 4.557 23 H 0.103 0.897 24 C -0.124 4.124 25 N -0.530 5.530 26 Si 0.709 3.291 27 H -0.204 1.204 28 H -0.222 1.222 29 H -0.185 1.185 30 H 0.109 0.891 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.136 0.864 36 H 0.118 0.882 37 H 0.113 0.887 38 H 0.112 0.888 39 H 0.125 0.875 40 H 0.125 0.875 41 H 0.254 0.746 42 H 0.054 0.946 43 H 0.120 0.880 44 H 0.067 0.933 45 H 0.073 0.927 46 H 0.066 0.934 47 H 0.058 0.942 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -12.507 -4.079 18.720 22.880 hybrid contribution 0.248 0.110 -0.262 0.377 sum -12.260 -3.969 18.458 22.511 Atomic orbital electron populations 1.22795 0.80066 1.03195 1.00309 1.87830 1.20413 1.26448 1.95514 1.22883 0.93020 0.85777 1.01549 1.21575 0.91948 0.81119 1.06732 1.46025 1.48612 1.15481 1.06732 1.24414 1.07552 0.90208 0.91824 1.19585 0.87511 0.99509 0.81047 0.88504 1.22707 0.96506 1.01283 0.95737 1.22364 0.93667 1.05584 0.97773 1.20770 0.91110 0.76175 0.80737 1.90771 1.63241 1.48235 1.38582 1.46126 1.09558 1.57339 1.23771 1.73990 1.14080 1.18928 1.02999 1.74885 1.23959 1.13724 1.03620 1.23169 0.96283 0.87602 0.89273 1.58919 1.08888 1.54272 0.95462 1.22443 0.85828 1.00850 1.01467 1.19781 0.86473 0.92961 0.91394 0.95651 1.22182 0.98162 1.01211 0.98996 1.20846 1.23185 1.21699 0.89952 0.89668 1.24811 0.96607 0.96256 0.94741 1.69855 1.38990 1.42190 1.01981 0.86955 0.81927 0.82646 0.77525 1.20378 1.22241 1.18541 0.89130 0.93915 0.93613 0.92677 0.91947 0.86366 0.88203 0.88725 0.88771 0.87476 0.87476 0.74578 0.94624 0.87951 0.93290 0.92694 0.93373 0.94201 0.92330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.31 16 2 O -0.38 -3.45 10.70 -35.23 -0.38 -3.83 16 3 C 0.05 0.39 6.19 37.16 0.23 0.62 16 4 C 0.11 1.11 6.03 -4.04 -0.02 1.08 16 5 N -0.47 -6.33 2.81 -114.08 -0.32 -6.65 16 6 C 0.13 1.67 6.86 -154.02 -1.06 0.61 16 7 C 0.23 2.02 3.90 -68.25 -0.27 1.76 16 8 H 0.10 0.59 7.18 -51.93 -0.37 0.22 16 9 C -0.12 -0.82 6.67 -25.19 -0.17 -0.99 16 10 C -0.15 -1.06 6.86 -26.74 -0.18 -1.24 16 11 C 0.53 5.91 8.43 -10.86 -0.09 5.81 16 12 O -0.53 -8.26 18.03 5.56 0.10 -8.16 16 13 N -0.71 -7.33 5.86 -53.97 -0.32 -7.65 16 14 N -0.26 -4.51 12.17 32.99 0.40 -4.11 16 15 N -0.32 -6.36 10.03 30.32 0.30 -6.05 16 16 C 0.39 7.03 6.02 -318.87 -1.92 5.11 16 17 N -0.45 -8.78 4.61 -176.08 -0.81 -9.59 16 18 C 0.04 0.70 9.13 60.06 0.55 1.24 16 19 C 0.20 4.65 1.32 -68.87 -0.09 4.56 16 20 H 0.03 0.65 6.97 -51.93 -0.36 0.29 16 21 C -0.15 -3.39 8.50 37.15 0.32 -3.07 16 22 C -0.52 -13.70 8.54 -34.44 -0.29 -13.99 16 23 H 0.09 2.37 6.64 -52.49 -0.35 2.02 16 24 C 0.08 2.19 5.45 -17.82 -0.10 2.10 16 25 N -0.89 -26.14 13.96 55.43 0.77 -25.36 16 26 Si 0.88 21.79 24.37 -169.99 -4.14 17.65 16 27 H -0.28 -6.75 6.87 56.52 0.39 -6.36 16 28 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 29 H -0.26 -6.43 6.53 56.52 0.37 -6.06 16 30 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.06 0.60 5.79 -51.93 -0.30 0.30 16 35 H 0.12 1.37 8.08 -51.93 -0.42 0.95 16 36 H 0.10 0.76 7.41 -51.93 -0.38 0.38 16 37 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.09 0.80 7.89 -51.93 -0.41 0.39 16 39 H 0.11 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.41 4.43 8.96 -40.82 -0.37 4.07 16 42 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.10 1.87 6.33 -51.93 -0.33 1.54 16 44 H 0.05 0.67 5.39 -51.93 -0.28 0.39 16 45 H 0.05 1.23 8.14 -51.92 -0.42 0.80 16 46 H 0.05 1.14 3.27 -51.93 -0.17 0.97 16 47 H 0.04 0.88 6.24 -51.93 -0.32 0.56 16 48 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 379.72 15.07 5.72 5.72 Total: -1.00 -34.73 379.72 -7.70 -42.44 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -7.05 Total: 0.67 kcal Atomic # 6 Polarization: 6.90 SS G_CDS: -1.98 Total: 4.92 kcal Atomic # 7 Polarization: -59.44 SS G_CDS: 0.03 Total: -59.41 kcal Atomic # 8 Polarization: -11.71 SS G_CDS: -0.28 Total: -11.99 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.14 Total: 17.65 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.73 -7.70 -42.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001555564358.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.652 kcal (2) G-P(sol) polarization free energy of solvation -34.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds