Wall clock time and date at job start Tue Mar 31 2020 19:54:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42903 * 113.99732 * 2 1 4 4 C 1.53003 * 109.47261 * 179.97438 * 3 2 1 5 5 N 1.46496 * 109.47206 * 177.65249 * 4 3 2 6 6 C 1.36732 * 127.13572 * 83.18244 * 5 4 3 7 7 C 1.50699 * 126.34784 * 0.02562 * 6 5 4 8 8 H 1.08995 * 110.28899 * 14.18628 * 7 6 5 9 9 C 1.54310 * 110.31023 * 252.35862 * 7 6 5 10 10 C 1.54628 * 101.84669 * 215.85168 * 9 7 6 11 11 C 1.51277 * 104.19667 * 24.58082 * 10 9 7 12 12 O 1.21276 * 124.94477 * 163.72561 * 11 10 9 13 13 N 1.34422 * 110.11832 * 343.75231 * 11 10 9 14 14 N 1.30298 * 107.30591 * 179.75174 * 6 5 4 15 15 N 1.28530 * 110.05087 * 0.24398 * 14 6 5 16 16 C 1.31216 * 109.86391 * 359.97438 * 15 14 6 17 17 N 1.38580 * 126.47655 * 180.02562 * 16 15 14 18 18 C 1.46898 * 110.99575 * 256.94126 * 17 16 15 19 19 C 1.46900 * 110.99739 * 20.89593 * 17 16 15 20 20 H 1.09002 * 109.46617 * 299.99496 * 19 17 16 21 21 C 1.52993 * 109.47382 * 59.99797 * 19 17 16 22 22 C 1.50703 * 109.46731 * 180.02562 * 19 17 16 23 23 H 1.08002 * 120.00335 * 0.02562 * 22 19 17 24 24 C 1.37882 * 119.99749 * 179.97438 * 22 19 17 25 25 N 1.31515 * 119.99606 * 179.97438 * 24 22 19 26 26 Si 1.86800 * 119.99925 * 0.02562 * 24 22 19 27 27 H 1.48501 * 109.46915 * 90.00197 * 26 24 22 28 28 H 1.48499 * 109.47009 * 209.99607 * 26 24 22 29 29 H 1.48498 * 109.47049 * 329.99971 * 26 24 22 30 30 H 1.08996 * 109.46437 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47437 * 300.00883 * 1 2 3 32 32 H 1.09000 * 109.46596 * 60.00340 * 1 2 3 33 33 H 1.09001 * 109.47424 * 59.99595 * 3 2 1 34 34 H 1.09004 * 109.47262 * 299.99316 * 3 2 1 35 35 H 1.09003 * 109.46711 * 57.64742 * 4 3 2 36 36 H 1.09004 * 109.46807 * 297.65744 * 4 3 2 37 37 H 1.09001 * 111.11357 * 97.61825 * 9 7 6 38 38 H 1.08999 * 110.77741 * 333.93477 * 9 7 6 39 39 H 1.09000 * 110.48193 * 265.90811 * 10 9 7 40 40 H 1.09000 * 110.59687 * 143.31845 * 10 9 7 41 41 H 0.97004 * 124.35595 * 179.59048 * 13 11 10 42 42 H 1.08998 * 109.47483 * 66.58039 * 18 17 16 43 43 H 1.09006 * 109.46566 * 186.57912 * 18 17 16 44 44 H 1.09000 * 109.47594 * 306.57178 * 18 17 16 45 45 H 1.09009 * 109.46852 * 60.00184 * 21 19 17 46 46 H 1.09001 * 109.47099 * 179.97438 * 21 19 17 47 47 H 1.08995 * 109.47258 * 300.00056 * 21 19 17 48 48 H 0.97000 * 119.99412 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1848 0.0006 5 7 4.1312 2.5220 -0.0559 6 6 4.3517 3.3724 0.9918 7 6 4.0253 3.1097 2.4394 8 1 3.8145 2.0515 2.5932 9 6 2.8153 3.9606 2.8786 10 6 3.1867 4.3109 4.3382 11 6 4.6958 4.2109 4.3713 12 8 5.4037 4.6730 5.2408 13 7 5.1381 3.5358 3.2963 14 7 4.9017 4.4497 0.5074 15 7 5.0379 4.3406 -0.7660 16 6 4.5789 3.1781 -1.1655 17 7 4.5575 2.7041 -2.4676 18 6 3.2081 2.7994 -3.0403 19 6 5.5352 3.4147 -3.3025 20 1 5.2982 4.4785 -3.3139 21 6 6.9390 3.2110 -2.7292 22 6 5.4826 2.8737 -4.7081 23 1 4.7917 2.0816 -4.9564 24 6 6.3159 3.3907 -5.6774 25 7 6.2704 2.9182 -6.9039 26 14 7.5105 4.7612 -5.2480 27 1 8.8001 4.1729 -4.8051 28 1 7.7390 5.6113 -6.4439 29 1 6.9420 5.5885 -4.1537 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8898 32 1 -0.3632 0.5138 -0.8900 33 1 1.6885 1.8465 0.8899 34 1 1.6887 1.8464 -0.8901 35 1 3.8546 0.6078 -0.8673 36 1 3.8596 0.6808 0.9112 37 1 1.8928 3.3814 2.8390 38 1 2.7345 4.8611 2.2697 39 1 2.7416 3.5935 5.0276 40 1 2.8660 5.3235 4.5830 41 1 6.0728 3.3567 3.1089 42 1 2.9333 3.8484 -3.1504 43 1 3.1930 2.3154 -4.0169 44 1 2.4968 2.3049 -2.3788 45 1 7.1760 2.1471 -2.7179 46 1 7.6645 3.7379 -3.3491 47 1 6.9767 3.6026 -1.7127 48 1 6.8563 3.2822 -7.5858 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001555564358.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:54:22 Heat of formation + Delta-G solvation = 5.573339 kcal Electronic energy + Delta-G solvation = -30783.649171 eV Core-core repulsion = 26682.418387 eV Total energy + Delta-G solvation = -4101.230783 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.19142 -41.23693 -39.13196 -39.01679 -37.66518 -36.30237 -34.84685 -32.35070 -32.28290 -31.53690 -30.92852 -28.62409 -27.26764 -27.14217 -26.21282 -24.64567 -24.07011 -23.26165 -21.63061 -21.51073 -21.14493 -19.07116 -18.60911 -18.18654 -17.69804 -17.53763 -17.12376 -17.04673 -16.75397 -16.47176 -16.20039 -15.87344 -15.53607 -15.35955 -15.07257 -14.72907 -14.59886 -14.39771 -14.12774 -14.09243 -13.74869 -13.61095 -13.38298 -13.12613 -12.87468 -12.78093 -12.67412 -12.55097 -12.43829 -12.19818 -12.18180 -12.01407 -11.69190 -11.54891 -11.32360 -11.20113 -11.02540 -10.79977 -10.66804 -10.55272 -10.30694 -9.33135 -8.35114 -6.38597 0.57958 0.99030 1.25933 1.33959 1.43388 1.55681 1.68477 2.26419 2.35739 2.56390 2.83215 3.00435 3.17764 3.36825 3.54326 3.61427 3.78047 3.83743 3.89064 4.03177 4.12665 4.25487 4.29518 4.41842 4.42628 4.46611 4.55026 4.56952 4.61069 4.62013 4.72233 4.76621 4.84897 4.92648 4.93712 4.94491 5.00059 5.03106 5.12485 5.22589 5.42401 5.55089 5.68681 5.76073 5.94418 6.07190 6.12816 6.48212 6.65954 7.14582 7.25845 7.68593 8.79574 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011173 B = 0.003869 C = 0.003004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2505.433895 B = 7234.850350 C = 9319.253921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.401 6.401 3 C 0.051 3.949 4 C 0.103 3.897 5 N -0.458 5.458 6 C 0.163 3.837 7 C 0.229 3.771 8 H 0.141 0.859 9 C -0.115 4.115 10 C -0.141 4.141 11 C 0.516 3.484 12 O -0.585 6.585 13 N -0.715 5.715 14 N -0.303 5.303 15 N -0.359 5.359 16 C 0.373 3.627 17 N -0.452 5.452 18 C 0.045 3.955 19 C 0.209 3.791 20 H 0.004 0.996 21 C -0.138 4.138 22 C -0.510 4.510 23 H 0.064 0.936 24 C 0.034 3.966 25 N -0.933 5.933 26 Si 0.929 3.071 27 H -0.268 1.268 28 H -0.292 1.292 29 H -0.263 1.263 30 H 0.100 0.900 31 H 0.063 0.937 32 H 0.043 0.957 33 H 0.086 0.914 34 H 0.047 0.953 35 H 0.101 0.899 36 H 0.134 0.866 37 H 0.139 0.861 38 H 0.074 0.926 39 H 0.142 0.858 40 H 0.112 0.888 41 H 0.409 0.591 42 H 0.025 0.975 43 H 0.084 0.916 44 H 0.086 0.914 45 H 0.056 0.944 46 H 0.038 0.962 47 H 0.045 0.955 48 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.757 -6.203 21.424 27.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.319 6.319 3 C -0.026 4.026 4 C -0.019 4.019 5 N -0.154 5.154 6 C -0.107 4.107 7 C 0.121 3.879 8 H 0.158 0.842 9 C -0.154 4.154 10 C -0.181 4.181 11 C 0.304 3.696 12 O -0.466 6.466 13 N -0.368 5.368 14 N -0.142 5.142 15 N -0.203 5.203 16 C 0.016 3.984 17 N -0.177 5.177 18 C -0.102 4.102 19 C 0.102 3.898 20 H 0.021 0.979 21 C -0.196 4.196 22 C -0.549 4.549 23 H 0.082 0.918 24 C -0.166 4.166 25 N -0.572 5.572 26 Si 0.757 3.243 27 H -0.195 1.195 28 H -0.219 1.219 29 H -0.187 1.187 30 H 0.118 0.882 31 H 0.081 0.919 32 H 0.061 0.939 33 H 0.104 0.896 34 H 0.065 0.935 35 H 0.119 0.881 36 H 0.152 0.848 37 H 0.157 0.843 38 H 0.092 0.908 39 H 0.160 0.840 40 H 0.130 0.870 41 H 0.247 0.753 42 H 0.044 0.956 43 H 0.102 0.898 44 H 0.104 0.896 45 H 0.075 0.925 46 H 0.056 0.944 47 H 0.064 0.936 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -14.604 -5.257 21.634 26.626 hybrid contribution 0.774 0.380 -1.066 1.371 sum -13.830 -4.877 20.568 25.261 Atomic orbital electron populations 1.22989 0.78612 1.04207 1.01202 1.87806 1.21975 1.26474 1.95662 1.22788 0.91580 0.85973 1.02272 1.21881 0.93253 0.79056 1.07725 1.46088 1.47757 1.16293 1.05259 1.25262 1.03792 0.88361 0.93264 1.20171 0.87679 1.02357 0.77706 0.84207 1.22791 0.97102 1.00736 0.94764 1.22410 0.89917 1.07058 0.98672 1.21591 0.93025 0.74995 0.79959 1.90741 1.64952 1.50304 1.40561 1.46288 1.09876 1.56896 1.23788 1.73917 1.16848 1.21303 1.02158 1.74758 1.25103 1.15253 1.05229 1.22862 0.98108 0.88168 0.89280 1.58772 1.09006 1.53768 0.96123 1.22434 0.85801 1.00422 1.01503 1.19405 0.88023 0.91771 0.90602 0.97872 1.22044 0.97439 1.01105 0.98999 1.21041 1.21794 1.20411 0.91615 0.91795 1.25430 0.98264 0.98196 0.94696 1.69953 1.40400 1.43925 1.02947 0.86155 0.80525 0.80469 0.77151 1.19456 1.21942 1.18749 0.88203 0.91852 0.93873 0.89643 0.93495 0.88108 0.84781 0.84270 0.90752 0.84022 0.86952 0.75297 0.95635 0.89770 0.89573 0.92518 0.94358 0.93642 0.92184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 113.37 1.25 1.47 16 2 O -0.40 -5.71 10.70 -148.98 -1.59 -7.31 16 3 C 0.05 0.67 6.19 71.98 0.45 1.12 16 4 C 0.10 1.71 6.03 86.38 0.52 2.23 16 5 N -0.46 -11.19 2.81 -514.85 -1.45 -12.63 16 6 C 0.16 3.81 6.86 137.64 0.94 4.76 16 7 C 0.23 3.00 3.90 44.64 0.17 3.18 16 8 H 0.14 0.78 7.18 -2.39 -0.02 0.76 16 9 C -0.12 -0.96 6.67 31.59 0.21 -0.75 16 10 C -0.14 -1.34 6.86 30.59 0.21 -1.13 16 11 C 0.52 10.53 8.43 87.90 0.74 11.27 16 12 O -0.59 -17.92 18.03 -3.02 -0.05 -17.98 16 13 N -0.72 -13.02 5.86 -443.25 -2.60 -15.61 16 14 N -0.30 -10.28 12.17 -49.54 -0.60 -10.88 16 15 N -0.36 -14.38 10.03 -58.00 -0.58 -14.97 16 16 C 0.37 13.14 6.02 260.11 1.57 14.71 16 17 N -0.45 -17.70 4.61 -711.00 -3.27 -20.98 16 18 C 0.04 1.54 9.13 127.69 1.17 2.71 16 19 C 0.21 9.93 1.32 44.17 0.06 9.99 16 20 H 0.00 0.19 6.97 -2.39 -0.02 0.17 16 21 C -0.14 -6.37 8.50 71.98 0.61 -5.75 16 22 C -0.51 -27.68 8.54 25.60 0.22 -27.46 16 23 H 0.06 3.69 6.64 -2.91 -0.02 3.67 16 24 C 0.03 1.91 5.45 84.66 0.46 2.37 16 25 N -0.93 -55.90 13.96 21.45 0.30 -55.60 16 26 Si 0.93 45.69 24.37 68.60 1.67 47.36 16 27 H -0.27 -12.73 6.87 99.48 0.68 -12.05 16 28 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 29 H -0.26 -12.91 6.53 99.48 0.65 -12.26 16 30 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.06 0.30 8.14 -2.39 -0.02 0.28 16 32 H 0.04 0.40 8.14 -2.39 -0.02 0.38 16 33 H 0.09 0.61 8.14 -2.39 -0.02 0.60 16 34 H 0.05 0.76 5.79 -2.38 -0.01 0.75 16 35 H 0.10 2.12 8.08 -2.39 -0.02 2.10 16 36 H 0.13 1.35 7.41 -2.38 -0.02 1.33 16 37 H 0.14 0.02 8.14 -2.39 -0.02 0.00 16 38 H 0.07 1.00 7.89 -2.39 -0.02 0.98 16 39 H 0.14 0.46 8.14 -2.39 -0.02 0.44 16 40 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.41 8.22 8.96 -92.71 -0.83 7.39 16 42 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.08 3.18 6.33 -2.38 -0.02 3.16 16 44 H 0.09 2.26 5.39 -2.39 -0.01 2.25 16 45 H 0.06 2.53 8.14 -2.38 -0.02 2.51 16 46 H 0.04 1.81 3.27 -2.39 -0.01 1.80 16 47 H 0.04 2.02 6.24 -2.39 -0.01 2.01 16 48 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 Total: -1.00 -80.55 379.72 0.49 -80.07 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: 0.09 Total: 9.84 kcal Atomic # 6 Polarization: 10.11 SS G_CDS: 8.58 Total: 18.69 kcal Atomic # 7 Polarization: -122.46 SS G_CDS: -8.20 Total: -130.67 kcal Atomic # 8 Polarization: -23.64 SS G_CDS: -1.65 Total: -25.29 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 1.67 Total: 47.36 kcal Total: -80.55 0.49 -80.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001555564358.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.640 kcal (2) G-P(sol) polarization free energy of solvation -80.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds