Wall clock time and date at job start Tue Mar 31 2020 19:54:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 114.00116 * 2 1 4 4 C 1.53007 * 109.47320 * 180.02562 * 3 2 1 5 5 N 1.46495 * 109.47222 * 178.09579 * 4 3 2 6 6 C 1.36740 * 127.13512 * 83.24749 * 5 4 3 7 7 C 1.50695 * 126.34808 * 0.02562 * 6 5 4 8 8 H 1.09001 * 110.28506 * 342.73714 * 7 6 5 9 9 C 1.54480 * 110.24718 * 104.71347 * 7 6 5 10 10 C 1.54632 * 101.79940 * 144.43402 * 9 7 6 11 11 C 1.51279 * 104.19333 * 335.18370 * 10 9 7 12 12 O 1.21290 * 124.94150 * 196.28744 * 11 10 9 13 13 N 1.34418 * 110.11928 * 16.25587 * 11 10 9 14 14 N 1.30289 * 107.30378 * 179.75451 * 6 5 4 15 15 N 1.28538 * 110.05520 * 0.24045 * 14 6 5 16 16 C 1.31208 * 109.85591 * 0.02562 * 15 14 6 17 17 N 1.38582 * 126.46996 * 180.02562 * 16 15 14 18 18 C 1.46904 * 110.99916 * 257.90689 * 17 16 15 19 19 C 1.46896 * 111.00325 * 21.86050 * 17 16 15 20 20 H 1.09006 * 109.47212 * 300.00512 * 19 17 16 21 21 C 1.53007 * 109.46687 * 59.99860 * 19 17 16 22 22 C 1.50695 * 109.47482 * 180.02562 * 19 17 16 23 23 H 1.07997 * 120.00071 * 0.02562 * 22 19 17 24 24 C 1.37878 * 120.00031 * 180.02562 * 22 19 17 25 25 N 1.31515 * 120.00021 * 179.97438 * 24 22 19 26 26 Si 1.86804 * 120.00141 * 359.97438 * 24 22 19 27 27 H 1.48497 * 109.47051 * 90.00136 * 26 24 22 28 28 H 1.48498 * 109.46945 * 210.00139 * 26 24 22 29 29 H 1.48497 * 109.46895 * 330.00353 * 26 24 22 30 30 H 1.09008 * 109.46375 * 299.99650 * 1 2 3 31 31 H 1.08994 * 109.47142 * 59.99075 * 1 2 3 32 32 H 1.08998 * 109.47257 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46867 * 60.00672 * 3 2 1 34 34 H 1.09000 * 109.47794 * 300.00661 * 3 2 1 35 35 H 1.08999 * 109.46537 * 58.09153 * 4 3 2 36 36 H 1.09003 * 109.46803 * 298.10016 * 4 3 2 37 37 H 1.08995 * 110.96943 * 26.29882 * 9 7 6 38 38 H 1.08999 * 110.96520 * 262.57149 * 9 7 6 39 39 H 1.09006 * 110.48457 * 93.86087 * 10 9 7 40 40 H 1.09002 * 110.48453 * 216.37281 * 10 9 7 41 41 H 0.97000 * 124.34838 * 180.41667 * 13 11 10 42 42 H 1.09000 * 109.47035 * 66.55753 * 18 17 16 43 43 H 1.09003 * 109.47067 * 186.55537 * 18 17 16 44 44 H 1.08996 * 109.46990 * 306.55199 * 18 17 16 45 45 H 1.08997 * 109.46922 * 60.00365 * 21 19 17 46 46 H 1.09001 * 109.46758 * 180.02562 * 21 19 17 47 47 H 1.08996 * 109.46950 * 300.00007 * 21 19 17 48 48 H 0.97004 * 119.99910 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5356 1.1846 -0.0006 5 7 4.1313 2.5222 -0.0465 6 6 4.3532 3.3637 1.0082 7 6 4.0286 3.0886 2.4538 8 1 3.3204 2.2638 2.5318 9 6 5.3185 2.7616 3.2385 10 6 5.0242 3.4056 4.6132 11 6 4.0165 4.4913 4.3061 12 8 3.7351 5.4081 5.0487 13 7 3.4790 4.2927 3.0902 14 7 4.9027 4.4450 0.5323 15 7 5.0373 4.3468 -0.7422 16 6 4.5767 3.1882 -1.1510 17 7 4.5535 2.7255 -2.4571 18 6 3.2085 2.8481 -3.0352 19 6 5.5467 3.4263 -3.2818 20 1 5.3278 4.4942 -3.2853 21 6 6.9444 3.1943 -2.7039 22 6 5.4916 2.8981 -4.6920 23 1 4.7887 2.1199 -4.9501 24 6 6.3386 3.4083 -5.6529 25 7 6.2909 2.9470 -6.8836 26 14 7.5540 4.7549 -5.2068 27 1 8.8311 4.1415 -4.7620 28 1 7.8031 5.6103 -6.3949 29 1 6.9940 5.5833 -4.1090 30 1 -0.3632 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 1.6887 1.8463 0.8901 34 1 1.6886 1.8465 -0.8899 35 1 3.8544 0.6146 -0.8733 36 1 3.8599 0.6732 0.9057 37 1 6.1877 3.2229 2.7698 38 1 5.4547 1.6844 3.3335 39 1 4.5969 2.6704 5.2952 40 1 5.9329 3.8342 5.0361 41 1 2.8135 4.8705 2.6849 42 1 2.9517 3.9025 -3.1373 43 1 3.1899 2.3730 -4.0160 44 1 2.4861 2.3598 -2.3812 45 1 7.1633 2.1265 -2.7004 46 1 7.6814 3.7147 -3.3155 47 1 6.9839 3.5767 -1.6840 48 1 6.8865 3.3062 -7.5597 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001555564359.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:54:25 Heat of formation + Delta-G solvation = 31.988102 kcal Electronic energy + Delta-G solvation = -30753.311907 eV Core-core repulsion = 26653.226554 eV Total energy + Delta-G solvation = -4100.085353 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.97971 -40.41439 -38.41303 -37.55512 -36.70001 -35.26156 -32.86825 -31.63116 -30.67664 -30.31393 -29.96546 -27.54085 -26.68027 -25.46116 -24.60226 -23.88587 -22.99998 -21.93365 -20.83952 -20.58208 -19.67877 -17.75356 -17.41409 -17.00557 -16.77191 -16.46954 -16.39701 -15.87594 -15.48713 -15.33308 -15.09834 -14.78998 -14.33366 -14.03587 -13.87473 -13.76743 -13.46257 -13.32918 -13.04994 -12.83904 -12.70608 -12.41004 -12.14773 -11.95598 -11.90053 -11.72600 -11.45701 -11.34750 -11.22461 -10.84236 -10.73969 -10.39757 -10.23205 -10.15575 -10.14115 -10.06602 -9.63629 -9.56644 -9.43848 -8.92474 -8.66967 -7.86578 -6.18876 -4.20705 1.69994 2.07375 2.38288 2.90236 3.12300 3.25285 3.37036 3.41729 3.42858 3.84365 4.05087 4.20352 4.27041 4.33414 4.33681 4.44927 4.52057 4.64646 4.79469 4.89908 4.95014 4.99667 5.06506 5.14083 5.30724 5.31457 5.32896 5.39004 5.45011 5.54612 5.69348 5.82055 5.90985 6.04398 6.29766 6.36475 6.40154 6.45570 6.50240 6.61701 6.69422 6.75240 6.84498 7.03370 7.35131 7.51257 7.78113 7.97834 8.42267 8.80810 8.93559 9.41267 10.92641 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011210 B = 0.003823 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2497.139761 B = 7321.577498 C = 9243.126438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.384 6.384 3 C 0.045 3.955 4 C 0.111 3.889 5 N -0.471 5.471 6 C 0.129 3.871 7 C 0.232 3.768 8 H 0.097 0.903 9 C -0.124 4.124 10 C -0.154 4.154 11 C 0.526 3.474 12 O -0.533 6.533 13 N -0.712 5.712 14 N -0.260 5.260 15 N -0.317 5.317 16 C 0.392 3.608 17 N -0.451 5.451 18 C 0.042 3.958 19 C 0.199 3.801 20 H 0.026 0.974 21 C -0.147 4.147 22 C -0.519 4.519 23 H 0.085 0.915 24 C 0.079 3.921 25 N -0.893 5.893 26 Si 0.880 3.120 27 H -0.277 1.277 28 H -0.295 1.295 29 H -0.261 1.261 30 H 0.042 0.958 31 H 0.045 0.955 32 H 0.091 0.909 33 H 0.053 0.947 34 H 0.062 0.938 35 H 0.119 0.881 36 H 0.101 0.899 37 H 0.094 0.906 38 H 0.097 0.903 39 H 0.107 0.893 40 H 0.107 0.893 41 H 0.413 0.587 42 H 0.035 0.965 43 H 0.102 0.898 44 H 0.048 0.952 45 H 0.054 0.946 46 H 0.048 0.952 47 H 0.038 0.962 48 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.278 -7.246 19.047 22.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.302 6.302 3 C -0.033 4.033 4 C -0.013 4.013 5 N -0.168 5.168 6 C -0.139 4.139 7 C 0.123 3.877 8 H 0.115 0.885 9 C -0.163 4.163 10 C -0.194 4.194 11 C 0.313 3.687 12 O -0.409 6.409 13 N -0.368 5.368 14 N -0.100 5.100 15 N -0.162 5.162 16 C 0.037 3.963 17 N -0.176 5.176 18 C -0.105 4.105 19 C 0.094 3.906 20 H 0.043 0.957 21 C -0.205 4.205 22 C -0.557 4.557 23 H 0.103 0.897 24 C -0.124 4.124 25 N -0.530 5.530 26 Si 0.709 3.291 27 H -0.204 1.204 28 H -0.222 1.222 29 H -0.185 1.185 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.109 0.891 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.137 0.863 36 H 0.119 0.881 37 H 0.113 0.887 38 H 0.116 0.884 39 H 0.125 0.875 40 H 0.125 0.875 41 H 0.253 0.747 42 H 0.054 0.946 43 H 0.121 0.879 44 H 0.066 0.934 45 H 0.074 0.926 46 H 0.066 0.934 47 H 0.057 0.943 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -8.425 -6.125 19.220 21.861 hybrid contribution -0.471 0.460 -0.359 0.749 sum -8.896 -5.665 18.862 21.610 Atomic orbital electron populations 1.22797 0.80064 1.03201 1.00305 1.87821 1.20414 1.26408 1.95511 1.22872 0.93148 0.85788 1.01446 1.21575 0.91808 0.81089 1.06842 1.46032 1.48616 1.15650 1.06538 1.24406 1.07149 0.90713 0.91654 1.19650 0.96466 0.88111 0.83445 0.88545 1.22743 0.96849 1.02749 0.93927 1.22371 1.00460 0.98137 0.98454 1.20783 0.81402 0.85664 0.80894 1.90772 1.64174 1.34055 1.51888 1.46120 1.44010 1.28310 1.18374 1.73991 1.13962 1.18837 1.03240 1.74888 1.23830 1.14031 1.03423 1.23146 0.96533 0.87346 0.89324 1.58899 1.08538 1.54848 0.95290 1.22433 0.85898 1.00746 1.01439 1.19784 0.86241 0.93047 0.91566 0.95667 1.22178 0.98161 1.01244 0.98927 1.20844 1.22155 1.22779 0.89898 0.89673 1.24811 0.96704 0.96175 0.94729 1.69854 1.38628 1.42474 1.02068 0.86955 0.82015 0.82498 0.77588 1.20361 1.22247 1.18550 0.93959 0.93622 0.89078 0.92882 0.91997 0.86308 0.88087 0.88739 0.88449 0.87463 0.87459 0.74740 0.94646 0.87938 0.93361 0.92647 0.93375 0.94258 0.92330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.33 16 2 O -0.38 -3.58 10.70 -35.23 -0.38 -3.96 16 3 C 0.05 0.41 6.21 37.16 0.23 0.64 16 4 C 0.11 1.11 5.95 -4.04 -0.02 1.09 16 5 N -0.47 -6.32 2.81 -114.09 -0.32 -6.64 16 6 C 0.13 1.68 6.87 -154.02 -1.06 0.62 16 7 C 0.23 2.02 3.86 -68.11 -0.26 1.76 16 8 H 0.10 0.59 7.42 -51.93 -0.39 0.20 16 9 C -0.12 -0.88 6.67 -25.10 -0.17 -1.05 16 10 C -0.15 -1.09 6.86 -26.74 -0.18 -1.28 16 11 C 0.53 5.86 8.43 -10.86 -0.09 5.77 16 12 O -0.53 -8.18 18.03 5.55 0.10 -8.08 16 13 N -0.71 -7.12 5.86 -53.82 -0.32 -7.43 16 14 N -0.26 -4.52 12.16 32.99 0.40 -4.12 16 15 N -0.32 -6.35 10.09 30.31 0.31 -6.05 16 16 C 0.39 7.02 5.99 -318.88 -1.91 5.11 16 17 N -0.45 -8.77 4.61 -176.08 -0.81 -9.59 16 18 C 0.04 0.72 9.13 60.07 0.55 1.26 16 19 C 0.20 4.63 1.32 -68.87 -0.09 4.54 16 20 H 0.03 0.65 6.96 -51.93 -0.36 0.28 16 21 C -0.15 -3.34 8.50 37.16 0.32 -3.03 16 22 C -0.52 -13.67 8.54 -34.44 -0.29 -13.97 16 23 H 0.09 2.36 6.64 -52.49 -0.35 2.02 16 24 C 0.08 2.19 5.45 -17.82 -0.10 2.09 16 25 N -0.89 -26.10 13.96 55.43 0.77 -25.33 16 26 Si 0.88 21.71 24.37 -169.99 -4.14 17.57 16 27 H -0.28 -6.69 6.87 56.52 0.39 -6.30 16 28 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 29 H -0.26 -6.42 6.53 56.52 0.37 -6.05 16 30 H 0.04 0.23 8.14 -51.92 -0.42 -0.19 16 31 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.05 0.41 7.96 -51.93 -0.41 0.00 16 34 H 0.06 0.63 5.80 -51.93 -0.30 0.33 16 35 H 0.12 1.36 8.08 -51.93 -0.42 0.94 16 36 H 0.10 0.73 7.92 -51.93 -0.41 0.32 16 37 H 0.09 0.87 7.90 -51.93 -0.41 0.46 16 38 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.11 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.41 4.18 8.96 -40.82 -0.37 3.81 16 42 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.10 1.88 6.33 -51.93 -0.33 1.55 16 44 H 0.05 0.67 5.53 -51.93 -0.29 0.38 16 45 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 46 H 0.05 1.13 3.27 -51.93 -0.17 0.96 16 47 H 0.04 0.85 6.28 -51.93 -0.33 0.53 16 48 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 380.42 15.07 5.73 5.73 Total: -1.00 -34.55 380.42 -7.72 -42.27 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -7.09 Total: 0.73 kcal Atomic # 6 Polarization: 6.87 SS G_CDS: -1.97 Total: 4.89 kcal Atomic # 7 Polarization: -59.19 SS G_CDS: 0.03 Total: -59.16 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: -0.28 Total: -12.04 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.14 Total: 17.57 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.55 -7.72 -42.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001555564359.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.254 kcal (2) G-P(sol) polarization free energy of solvation -34.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds