Wall clock time and date at job start Tue Mar 31 2020 19:54:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 114.00116 * 2 1 4 4 C 1.53007 * 109.47320 * 180.02562 * 3 2 1 5 5 N 1.46495 * 109.47222 * 178.09579 * 4 3 2 6 6 C 1.36740 * 127.13512 * 83.24749 * 5 4 3 7 7 C 1.50695 * 126.34808 * 0.02562 * 6 5 4 8 8 H 1.09001 * 110.28506 * 342.73714 * 7 6 5 9 9 C 1.54480 * 110.24718 * 104.71347 * 7 6 5 10 10 C 1.54632 * 101.79940 * 144.43402 * 9 7 6 11 11 C 1.51279 * 104.19333 * 335.18370 * 10 9 7 12 12 O 1.21290 * 124.94150 * 196.28744 * 11 10 9 13 13 N 1.34418 * 110.11928 * 16.25587 * 11 10 9 14 14 N 1.30289 * 107.30378 * 179.75451 * 6 5 4 15 15 N 1.28538 * 110.05520 * 0.24045 * 14 6 5 16 16 C 1.31208 * 109.85591 * 0.02562 * 15 14 6 17 17 N 1.38582 * 126.46996 * 180.02562 * 16 15 14 18 18 C 1.46904 * 110.99916 * 257.90689 * 17 16 15 19 19 C 1.46896 * 111.00325 * 21.86050 * 17 16 15 20 20 H 1.09006 * 109.47212 * 300.00512 * 19 17 16 21 21 C 1.53007 * 109.46687 * 59.99860 * 19 17 16 22 22 C 1.50695 * 109.47482 * 180.02562 * 19 17 16 23 23 H 1.07997 * 120.00071 * 0.02562 * 22 19 17 24 24 C 1.37878 * 120.00031 * 180.02562 * 22 19 17 25 25 N 1.31515 * 120.00021 * 179.97438 * 24 22 19 26 26 Si 1.86804 * 120.00141 * 359.97438 * 24 22 19 27 27 H 1.48497 * 109.47051 * 90.00136 * 26 24 22 28 28 H 1.48498 * 109.46945 * 210.00139 * 26 24 22 29 29 H 1.48497 * 109.46895 * 330.00353 * 26 24 22 30 30 H 1.09008 * 109.46375 * 299.99650 * 1 2 3 31 31 H 1.08994 * 109.47142 * 59.99075 * 1 2 3 32 32 H 1.08998 * 109.47257 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46867 * 60.00672 * 3 2 1 34 34 H 1.09000 * 109.47794 * 300.00661 * 3 2 1 35 35 H 1.08999 * 109.46537 * 58.09153 * 4 3 2 36 36 H 1.09003 * 109.46803 * 298.10016 * 4 3 2 37 37 H 1.08995 * 110.96943 * 26.29882 * 9 7 6 38 38 H 1.08999 * 110.96520 * 262.57149 * 9 7 6 39 39 H 1.09006 * 110.48457 * 93.86087 * 10 9 7 40 40 H 1.09002 * 110.48453 * 216.37281 * 10 9 7 41 41 H 0.97000 * 124.34838 * 180.41667 * 13 11 10 42 42 H 1.09000 * 109.47035 * 66.55753 * 18 17 16 43 43 H 1.09003 * 109.47067 * 186.55537 * 18 17 16 44 44 H 1.08996 * 109.46990 * 306.55199 * 18 17 16 45 45 H 1.08997 * 109.46922 * 60.00365 * 21 19 17 46 46 H 1.09001 * 109.46758 * 180.02562 * 21 19 17 47 47 H 1.08996 * 109.46950 * 300.00007 * 21 19 17 48 48 H 0.97004 * 119.99910 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5356 1.1846 -0.0006 5 7 4.1313 2.5222 -0.0465 6 6 4.3532 3.3637 1.0082 7 6 4.0286 3.0886 2.4538 8 1 3.3204 2.2638 2.5318 9 6 5.3185 2.7616 3.2385 10 6 5.0242 3.4056 4.6132 11 6 4.0165 4.4913 4.3061 12 8 3.7351 5.4081 5.0487 13 7 3.4790 4.2927 3.0902 14 7 4.9027 4.4450 0.5323 15 7 5.0373 4.3468 -0.7422 16 6 4.5767 3.1882 -1.1510 17 7 4.5535 2.7255 -2.4571 18 6 3.2085 2.8481 -3.0352 19 6 5.5467 3.4263 -3.2818 20 1 5.3278 4.4942 -3.2853 21 6 6.9444 3.1943 -2.7039 22 6 5.4916 2.8981 -4.6920 23 1 4.7887 2.1199 -4.9501 24 6 6.3386 3.4083 -5.6529 25 7 6.2909 2.9470 -6.8836 26 14 7.5540 4.7549 -5.2068 27 1 8.8311 4.1415 -4.7620 28 1 7.8031 5.6103 -6.3949 29 1 6.9940 5.5833 -4.1090 30 1 -0.3632 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 1.6887 1.8463 0.8901 34 1 1.6886 1.8465 -0.8899 35 1 3.8544 0.6146 -0.8733 36 1 3.8599 0.6732 0.9057 37 1 6.1877 3.2229 2.7698 38 1 5.4547 1.6844 3.3335 39 1 4.5969 2.6704 5.2952 40 1 5.9329 3.8342 5.0361 41 1 2.8135 4.8705 2.6849 42 1 2.9517 3.9025 -3.1373 43 1 3.1899 2.3730 -4.0160 44 1 2.4861 2.3598 -2.3812 45 1 7.1633 2.1265 -2.7004 46 1 7.6814 3.7147 -3.3155 47 1 6.9839 3.5767 -1.6840 48 1 6.8865 3.3062 -7.5597 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001555564359.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:54:24 Heat of formation + Delta-G solvation = 5.628084 kcal Electronic energy + Delta-G solvation = -30754.454963 eV Core-core repulsion = 26653.226554 eV Total energy + Delta-G solvation = -4101.228409 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.19282 -41.22930 -39.14018 -39.04869 -37.65673 -36.30652 -34.84331 -32.34606 -32.27807 -31.53869 -30.94942 -28.61851 -27.29914 -27.15166 -26.21772 -24.71907 -24.05155 -23.18491 -21.69854 -21.52095 -21.13688 -19.05783 -18.58721 -18.17190 -17.75715 -17.51785 -17.15291 -17.08852 -16.78061 -16.48763 -16.16131 -15.88775 -15.56967 -15.36488 -14.99923 -14.77171 -14.62152 -14.40880 -14.13915 -14.08367 -13.72247 -13.61649 -13.40697 -13.02803 -12.93624 -12.82987 -12.67740 -12.58617 -12.44061 -12.24944 -12.16679 -12.03686 -11.65759 -11.54280 -11.30635 -11.20759 -11.02147 -10.79116 -10.73207 -10.59028 -10.26335 -9.35681 -8.34372 -6.37997 0.56561 1.00152 1.26616 1.34925 1.44273 1.55014 1.68194 2.27243 2.31839 2.55644 2.82651 3.01124 3.16570 3.36919 3.54033 3.61641 3.78107 3.79664 3.87351 4.04510 4.10387 4.21954 4.27553 4.40663 4.43985 4.47848 4.50209 4.53752 4.58570 4.61864 4.70269 4.75639 4.86547 4.88303 4.92821 4.95541 5.00053 5.02396 5.12489 5.23359 5.43487 5.55054 5.68598 5.76014 5.93610 6.02731 6.11000 6.48433 6.66576 7.14755 7.26489 7.68147 8.80307 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011210 B = 0.003823 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2497.139761 B = 7321.577498 C = 9243.126438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.397 6.397 3 C 0.051 3.949 4 C 0.104 3.896 5 N -0.458 5.458 6 C 0.164 3.836 7 C 0.230 3.770 8 H 0.141 0.859 9 C -0.117 4.117 10 C -0.142 4.142 11 C 0.517 3.483 12 O -0.584 6.584 13 N -0.713 5.713 14 N -0.304 5.304 15 N -0.359 5.359 16 C 0.373 3.627 17 N -0.451 5.451 18 C 0.046 3.954 19 C 0.208 3.792 20 H 0.002 0.998 21 C -0.137 4.137 22 C -0.511 4.511 23 H 0.063 0.937 24 C 0.033 3.967 25 N -0.933 5.933 26 Si 0.929 3.071 27 H -0.265 1.265 28 H -0.293 1.293 29 H -0.264 1.264 30 H 0.057 0.943 31 H 0.042 0.958 32 H 0.103 0.897 33 H 0.074 0.926 34 H 0.045 0.955 35 H 0.104 0.896 36 H 0.142 0.858 37 H 0.071 0.929 38 H 0.139 0.861 39 H 0.142 0.858 40 H 0.111 0.889 41 H 0.410 0.590 42 H 0.023 0.977 43 H 0.085 0.915 44 H 0.084 0.916 45 H 0.058 0.942 46 H 0.038 0.962 47 H 0.045 0.955 48 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.728 -9.190 22.119 25.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.315 6.315 3 C -0.027 4.027 4 C -0.018 4.018 5 N -0.154 5.154 6 C -0.106 4.106 7 C 0.122 3.878 8 H 0.159 0.841 9 C -0.156 4.156 10 C -0.181 4.181 11 C 0.306 3.694 12 O -0.465 6.465 13 N -0.367 5.367 14 N -0.143 5.143 15 N -0.203 5.203 16 C 0.016 3.984 17 N -0.175 5.175 18 C -0.101 4.101 19 C 0.101 3.899 20 H 0.019 0.981 21 C -0.195 4.195 22 C -0.549 4.549 23 H 0.081 0.919 24 C -0.166 4.166 25 N -0.573 5.573 26 Si 0.757 3.243 27 H -0.192 1.192 28 H -0.221 1.221 29 H -0.188 1.188 30 H 0.076 0.924 31 H 0.061 0.939 32 H 0.122 0.878 33 H 0.092 0.908 34 H 0.063 0.937 35 H 0.122 0.878 36 H 0.160 0.840 37 H 0.090 0.910 38 H 0.157 0.843 39 H 0.160 0.840 40 H 0.129 0.871 41 H 0.248 0.752 42 H 0.041 0.959 43 H 0.103 0.897 44 H 0.102 0.898 45 H 0.077 0.923 46 H 0.056 0.944 47 H 0.064 0.936 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -8.886 -8.105 22.299 25.335 hybrid contribution -0.483 0.997 -1.220 1.648 sum -9.369 -7.109 21.079 24.137 Atomic orbital electron populations 1.22984 0.78751 1.04323 1.00934 1.87798 1.21826 1.26283 1.95610 1.22759 0.92277 0.85961 1.01660 1.21898 0.92542 0.79087 1.08267 1.46094 1.47720 1.16524 1.05040 1.25249 1.03376 0.88900 0.93076 1.20204 0.98589 0.88558 0.80440 0.84144 1.22818 0.94738 1.05106 0.92951 1.22413 0.99403 0.97245 0.99081 1.21536 0.81564 0.85792 0.80554 1.90745 1.65923 1.36367 1.53424 1.46246 1.43533 1.28656 1.18217 1.73919 1.16717 1.21224 1.02402 1.74764 1.25006 1.15533 1.05018 1.22842 0.98375 0.87903 0.89304 1.58754 1.08470 1.54342 0.95975 1.22415 0.86036 1.00168 1.01469 1.19417 0.87971 0.91745 0.90740 0.98056 1.22033 0.97201 1.01280 0.98986 1.21039 1.20776 1.21468 0.91604 0.91850 1.25438 0.98440 0.98068 0.94681 1.69955 1.40029 1.44234 1.03060 0.86147 0.80636 0.80339 0.77129 1.19154 1.22073 1.18846 0.92441 0.93896 0.87821 0.90780 0.93697 0.87759 0.84050 0.91014 0.84318 0.84010 0.87073 0.75210 0.95859 0.89666 0.89808 0.92273 0.94360 0.93562 0.92193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 113.37 1.25 1.52 16 2 O -0.40 -6.06 10.70 -148.98 -1.59 -7.66 16 3 C 0.05 0.75 6.21 71.98 0.45 1.19 16 4 C 0.10 1.71 5.95 86.38 0.51 2.22 16 5 N -0.46 -11.14 2.81 -514.86 -1.45 -12.59 16 6 C 0.16 3.83 6.87 137.64 0.95 4.78 16 7 C 0.23 3.02 3.86 44.68 0.17 3.20 16 8 H 0.14 0.76 7.42 -2.39 -0.02 0.74 16 9 C -0.12 -1.13 6.67 31.65 0.21 -0.92 16 10 C -0.14 -1.44 6.86 30.59 0.21 -1.23 16 11 C 0.52 10.43 8.43 87.90 0.74 11.17 16 12 O -0.58 -17.63 18.03 -3.06 -0.06 -17.69 16 13 N -0.71 -12.46 5.86 -442.77 -2.59 -15.06 16 14 N -0.30 -10.29 12.16 -49.54 -0.60 -10.89 16 15 N -0.36 -14.37 10.09 -58.01 -0.59 -14.96 16 16 C 0.37 13.11 5.99 260.12 1.56 14.67 16 17 N -0.45 -17.61 4.61 -711.00 -3.28 -20.89 16 18 C 0.05 1.60 9.13 127.69 1.17 2.76 16 19 C 0.21 9.85 1.32 44.17 0.06 9.91 16 20 H 0.00 0.09 6.96 -2.38 -0.02 0.08 16 21 C -0.14 -6.21 8.50 71.98 0.61 -5.59 16 22 C -0.51 -27.62 8.54 25.60 0.22 -27.40 16 23 H 0.06 3.65 6.64 -2.91 -0.02 3.63 16 24 C 0.03 1.87 5.45 84.65 0.46 2.33 16 25 N -0.93 -55.82 13.96 21.45 0.30 -55.52 16 26 Si 0.93 45.43 24.37 68.60 1.67 47.10 16 27 H -0.27 -12.40 6.87 99.48 0.68 -11.72 16 28 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 29 H -0.26 -12.91 6.53 99.48 0.65 -12.26 16 30 H 0.06 0.43 8.14 -2.38 -0.02 0.41 16 31 H 0.04 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.07 0.79 7.96 -2.39 -0.02 0.77 16 34 H 0.04 0.81 5.80 -2.39 -0.01 0.79 16 35 H 0.10 2.13 8.08 -2.39 -0.02 2.11 16 36 H 0.14 1.23 7.92 -2.39 -0.02 1.21 16 37 H 0.07 1.09 7.90 -2.39 -0.02 1.07 16 38 H 0.14 0.28 8.14 -2.39 -0.02 0.26 16 39 H 0.14 0.54 8.14 -2.38 -0.02 0.52 16 40 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.41 7.66 8.96 -92.71 -0.83 6.83 16 42 H 0.02 0.84 8.14 -2.39 -0.02 0.83 16 43 H 0.08 3.25 6.33 -2.39 -0.02 3.23 16 44 H 0.08 2.28 5.53 -2.39 -0.01 2.26 16 45 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 46 H 0.04 1.78 3.27 -2.39 -0.01 1.77 16 47 H 0.05 2.01 6.28 -2.39 -0.02 1.99 16 48 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 Total: -1.00 -79.64 380.42 0.47 -79.17 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: 0.09 Total: 10.37 kcal Atomic # 6 Polarization: 10.05 SS G_CDS: 8.56 Total: 18.62 kcal Atomic # 7 Polarization: -121.70 SS G_CDS: -8.20 Total: -129.90 kcal Atomic # 8 Polarization: -23.70 SS G_CDS: -1.65 Total: -25.34 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 1.67 Total: 47.10 kcal Total: -79.64 0.47 -79.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001555564359.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.797 kcal (2) G-P(sol) polarization free energy of solvation -79.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds