Wall clock time and date at job start Tue Mar 31 2020 20:41:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42899 * 109.46848 * 2 1 4 4 C 1.42901 * 113.99589 * 179.97438 * 3 2 1 5 5 H 1.09000 * 110.30570 * 27.82794 * 4 3 2 6 6 C 1.54389 * 110.34483 * 265.53868 * 4 3 2 7 7 N 1.48142 * 104.61773 * 264.99540 * 6 4 3 8 8 C 1.34776 * 127.84000 * 140.41039 * 7 6 4 9 9 O 1.21597 * 120.00609 * 179.97438 * 8 7 6 10 10 C 1.47532 * 119.99720 * 359.97438 * 8 7 6 11 11 C 1.36595 * 125.76821 * 179.97438 * 10 8 7 12 12 N 1.34820 * 106.83334 * 179.97438 * 11 10 8 13 13 C 1.46505 * 126.59083 * 180.02562 * 12 11 10 14 14 C 1.52997 * 109.47040 * 124.99677 * 13 12 11 15 15 N 1.40208 * 106.81495 * 0.02562 * 12 11 10 16 16 N 1.28763 * 108.36528 * 359.74606 * 15 12 11 17 17 C 1.48150 * 104.32668 * 320.41477 * 7 6 4 18 18 C 1.54290 * 110.34285 * 150.00326 * 4 3 2 19 19 H 1.08999 * 110.33916 * 359.88970 * 18 4 3 20 20 C 1.53006 * 110.34075 * 237.74317 * 18 4 3 21 21 N 1.46498 * 109.46726 * 174.99883 * 20 18 4 22 22 C 1.36939 * 119.99903 * 180.02562 * 21 20 18 23 23 H 1.07999 * 119.99744 * 0.02562 * 22 21 20 24 24 C 1.38811 * 120.00055 * 179.97438 * 22 21 20 25 25 N 1.31618 * 119.99875 * 0.02562 * 24 22 21 26 26 Si 1.86806 * 119.99879 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.46875 * 0.02562 * 26 24 22 28 28 H 1.48501 * 109.46547 * 120.00159 * 26 24 22 29 29 H 1.48494 * 109.47400 * 240.00123 * 26 24 22 30 30 H 1.09003 * 109.47057 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.46862 * 299.99681 * 1 2 3 32 32 H 1.08999 * 109.47050 * 59.99662 * 1 2 3 33 33 H 1.09003 * 109.47028 * 240.00435 * 2 1 3 34 34 H 1.08999 * 109.47050 * 120.00337 * 2 1 3 35 35 H 1.08998 * 110.40789 * 23.78536 * 6 4 3 36 36 H 1.09000 * 110.40726 * 146.09463 * 6 4 3 37 37 H 1.07999 * 126.58546 * 359.97438 * 11 10 8 38 38 H 1.08999 * 109.46793 * 245.00253 * 13 12 11 39 39 H 1.09006 * 109.47099 * 5.00150 * 13 12 11 40 40 H 1.08999 * 109.47492 * 300.00414 * 14 13 12 41 41 H 1.09006 * 109.46789 * 60.00283 * 14 13 12 42 42 H 1.09005 * 109.47203 * 179.97438 * 14 13 12 43 43 H 1.08999 * 110.40590 * 280.80034 * 17 7 6 44 44 H 1.09002 * 110.40678 * 158.36557 * 17 7 6 45 45 H 1.08995 * 109.46794 * 294.99857 * 20 18 4 46 46 H 1.09000 * 109.47314 * 54.99991 * 20 18 4 47 47 H 0.96998 * 120.00310 * 359.97438 * 21 20 18 48 48 H 0.97005 * 119.99483 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.8795 0.5887 -0.4763 6 6 3.9565 1.6149 1.4440 7 7 4.0886 3.0775 1.6389 8 6 3.7940 3.7947 2.7413 9 8 3.9592 4.9993 2.7452 10 6 3.2711 3.1180 3.9435 11 6 2.9356 3.7261 5.1197 12 7 2.5038 2.7567 5.9512 13 6 2.0358 2.9319 7.3284 14 6 0.6357 2.3317 7.4714 15 7 2.5887 1.5487 5.2445 16 7 3.0395 1.7996 4.0648 17 6 4.6178 3.5732 0.3470 18 6 3.8670 2.7513 -0.7227 19 1 2.9946 3.2985 -1.0801 20 6 4.7995 2.4185 -1.8892 21 7 5.1059 3.6423 -2.6338 22 6 5.9276 3.5904 -3.7281 23 1 6.3494 2.6471 -4.0423 24 6 6.2175 4.7499 -4.4340 25 7 5.7031 5.8993 -4.0513 26 14 7.3390 4.6791 -5.9263 27 1 7.7833 3.2792 -6.1456 28 1 6.6011 5.1571 -7.1230 29 1 8.5236 5.5446 -5.6968 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 3.2424 1.1996 2.1551 36 1 4.9251 1.1265 1.5502 37 1 3.0034 4.7810 5.3412 38 1 2.7191 2.4271 8.0113 39 1 2.0017 3.9947 7.5681 40 1 -0.0476 2.8364 6.7885 41 1 0.6698 1.2689 7.2317 42 1 0.2876 2.4616 8.4962 43 1 5.6907 3.3924 0.2813 44 1 4.4026 4.6354 0.2304 45 1 5.7231 1.9865 -1.5041 46 1 4.3120 1.7028 -2.5513 47 1 4.7262 4.4893 -2.3523 48 1 5.9054 6.7095 -4.5448 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001565954204.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:17 Heat of formation + Delta-G solvation = 39.517735 kcal Electronic energy + Delta-G solvation = -29611.707798 eV Core-core repulsion = 25511.948954 eV Total energy + Delta-G solvation = -4099.758844 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.41343 -39.87342 -38.24722 -36.40068 -35.78578 -34.55696 -32.22702 -31.63554 -31.19834 -30.67188 -29.39533 -28.09835 -25.83720 -24.95196 -24.04799 -22.89185 -22.61646 -22.07116 -21.67984 -19.93496 -19.61716 -17.81978 -17.05489 -16.89450 -16.44681 -16.37116 -15.95884 -15.52291 -15.12747 -14.88366 -14.78504 -14.45762 -14.32065 -13.91799 -13.61970 -13.28103 -13.11146 -13.00562 -12.87957 -12.78013 -12.55807 -12.34670 -12.27095 -12.17209 -11.79072 -11.63552 -11.36180 -11.13446 -11.00086 -10.93765 -10.73356 -10.67551 -10.64238 -10.29425 -10.03792 -9.95001 -9.72397 -9.48836 -9.42413 -8.85216 -8.46504 -6.88960 -5.71794 -3.01216 0.91692 1.60428 1.73023 3.00110 3.32094 3.46959 3.51918 3.54677 3.73967 3.88960 4.01199 4.27617 4.40846 4.53636 4.62938 4.71424 4.76880 4.92010 4.92262 4.98933 5.08692 5.19580 5.20891 5.26865 5.37082 5.43069 5.46427 5.54828 5.56341 5.62584 5.77053 5.82250 5.90232 5.97412 6.01851 6.08413 6.09282 6.14517 6.32668 6.40157 6.47401 6.72374 6.83141 7.41459 7.61897 7.74129 7.74418 8.22624 8.46198 9.57664 10.14432 10.49218 11.50880 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.015080 B = 0.002644 C = 0.002340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.270653 B =10588.793644 C =11965.113535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.055 3.945 3 O -0.373 6.373 4 C 0.082 3.918 5 H 0.082 0.918 6 C 0.072 3.928 7 N -0.601 5.601 8 C 0.621 3.379 9 O -0.540 6.540 10 C -0.089 4.089 11 C 0.091 3.909 12 N -0.362 5.362 13 C 0.118 3.882 14 C -0.168 4.168 15 N -0.068 5.068 16 N -0.203 5.203 17 C 0.118 3.882 18 C -0.106 4.106 19 H 0.095 0.905 20 C 0.165 3.835 21 N -0.731 5.731 22 C -0.240 4.240 23 H 0.071 0.929 24 C -0.014 4.014 25 N -0.931 5.931 26 Si 0.907 3.093 27 H -0.281 1.281 28 H -0.292 1.292 29 H -0.292 1.292 30 H 0.067 0.933 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.049 0.951 34 H 0.047 0.953 35 H 0.111 0.889 36 H 0.078 0.922 37 H 0.205 0.795 38 H 0.098 0.902 39 H 0.105 0.895 40 H 0.065 0.935 41 H 0.074 0.926 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.090 0.910 45 H 0.023 0.977 46 H 0.024 0.976 47 H 0.385 0.615 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.618 -10.899 24.797 29.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.022 4.022 3 O -0.292 6.292 4 C 0.022 3.978 5 H 0.100 0.900 6 C -0.051 4.051 7 N -0.333 5.333 8 C 0.408 3.592 9 O -0.417 6.417 10 C -0.228 4.228 11 C -0.065 4.065 12 N -0.148 5.148 13 C -0.003 4.003 14 C -0.226 4.226 15 N -0.048 5.048 16 N -0.076 5.076 17 C -0.003 4.003 18 C -0.125 4.125 19 H 0.114 0.886 20 C 0.037 3.963 21 N -0.376 5.376 22 C -0.371 4.371 23 H 0.089 0.911 24 C -0.210 4.210 25 N -0.579 5.579 26 Si 0.738 3.262 27 H -0.206 1.206 28 H -0.219 1.219 29 H -0.219 1.219 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.129 0.871 36 H 0.096 0.904 37 H 0.222 0.778 38 H 0.116 0.884 39 H 0.123 0.877 40 H 0.084 0.916 41 H 0.093 0.907 42 H 0.101 0.899 43 H 0.100 0.900 44 H 0.108 0.892 45 H 0.041 0.959 46 H 0.041 0.959 47 H 0.219 0.781 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -10.812 -11.600 24.875 29.500 hybrid contribution 0.762 1.116 -0.632 1.492 sum -10.050 -10.485 24.243 28.260 Atomic orbital electron populations 1.21718 0.94121 1.01848 1.03005 1.22502 0.95407 0.84325 0.99958 1.88004 1.20500 1.25906 1.94759 1.23072 0.81459 0.98894 0.94350 0.90043 1.23234 1.02353 0.81282 0.98258 1.48610 1.62948 1.08920 1.12834 1.16260 0.77446 0.85226 0.80317 1.90832 1.55210 1.13006 1.82615 1.21440 1.14026 0.90209 0.97172 1.23372 0.96288 0.97050 0.89834 1.50580 1.44196 1.06709 1.13297 1.22033 0.97656 1.03702 0.76867 1.22090 0.94281 1.02878 1.03341 1.81945 1.20995 1.03017 0.98861 1.74596 1.08905 1.14125 1.09983 1.22502 0.98091 1.00307 0.79422 1.22451 0.99872 0.94774 0.95441 0.88634 1.20689 0.94407 0.90995 0.90217 1.42354 1.58048 1.04722 1.32453 1.19244 1.20655 0.93863 1.03323 0.91104 1.24755 1.01004 0.95506 0.99706 1.69678 1.48349 0.98091 1.41783 0.86122 0.80159 0.77161 0.82763 1.20586 1.21918 1.21887 0.91413 0.92170 0.91838 0.93284 0.93447 0.87096 0.90400 0.77850 0.88361 0.87667 0.91634 0.90711 0.89895 0.89978 0.89169 0.95906 0.95853 0.78091 0.93531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 10.28 37.16 0.38 -1.15 16 2 C 0.05 0.63 6.50 37.16 0.24 0.87 16 3 O -0.37 -5.59 9.95 -35.23 -0.35 -5.94 16 4 C 0.08 1.17 3.20 -25.33 -0.08 1.09 16 5 H 0.08 1.04 7.38 -51.93 -0.38 0.65 16 6 C 0.07 1.00 6.42 -2.41 -0.02 0.99 16 7 N -0.60 -9.71 3.32 -170.53 -0.57 -10.27 16 8 C 0.62 10.25 7.91 -12.47 -0.10 10.15 16 9 O -0.54 -10.26 17.13 5.28 0.09 -10.17 16 10 C -0.09 -1.21 6.87 -83.55 -0.57 -1.78 16 11 C 0.09 0.90 11.27 -16.83 -0.19 0.71 16 12 N -0.36 -3.11 3.69 -61.06 -0.23 -3.34 16 13 C 0.12 0.46 7.26 -4.04 -0.03 0.43 16 14 C -0.17 -0.62 10.12 37.16 0.38 -0.25 16 15 N -0.07 -0.80 13.65 60.35 0.82 0.02 16 16 N -0.20 -2.73 9.35 32.85 0.31 -2.42 16 17 C 0.12 2.07 6.41 -2.41 -0.02 2.05 16 18 C -0.11 -1.83 2.90 -89.22 -0.26 -2.08 16 19 H 0.10 1.83 7.98 -51.93 -0.41 1.42 16 20 C 0.16 3.28 5.38 -4.04 -0.02 3.26 16 21 N -0.73 -18.58 5.48 -59.91 -0.33 -18.91 16 22 C -0.24 -6.74 9.99 -15.06 -0.15 -6.89 16 23 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 24 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 25 N -0.93 -28.59 13.06 55.49 0.72 -27.86 16 26 Si 0.91 22.65 29.55 -169.99 -5.02 17.63 16 27 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 28 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 29 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.05 0.53 8.11 -51.93 -0.42 0.11 16 34 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.11 1.54 5.38 -51.93 -0.28 1.26 16 36 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.20 1.39 8.06 -52.49 -0.42 0.97 16 38 H 0.10 0.26 8.14 -51.93 -0.42 -0.16 16 39 H 0.11 0.13 8.08 -51.93 -0.42 -0.29 16 40 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 42 H 0.08 0.13 8.14 -51.93 -0.42 -0.30 16 43 H 0.08 1.44 7.75 -51.93 -0.40 1.04 16 44 H 0.09 1.75 7.88 -51.93 -0.41 1.34 16 45 H 0.02 0.45 7.98 -51.93 -0.41 0.03 16 46 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.39 10.40 7.61 -40.82 -0.31 10.08 16 48 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 400.27 15.07 6.03 6.03 Total: -1.00 -35.85 400.27 -6.70 -42.54 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -7.65 Total: 5.78 kcal Atomic # 6 Polarization: 7.44 SS G_CDS: -0.53 Total: 6.91 kcal Atomic # 7 Polarization: -63.52 SS G_CDS: 0.74 Total: -62.78 kcal Atomic # 8 Polarization: -15.86 SS G_CDS: -0.26 Total: -16.12 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.63 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -35.85 -6.70 -42.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001565954204.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.062 kcal (2) G-P(sol) polarization free energy of solvation -35.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds