Wall clock time and date at job start Tue Mar 31 2020 20:41:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42899 * 109.46848 * 2 1 4 4 C 1.42901 * 113.99589 * 179.97438 * 3 2 1 5 5 H 1.09000 * 110.30570 * 27.82794 * 4 3 2 6 6 C 1.54389 * 110.34483 * 265.53868 * 4 3 2 7 7 N 1.48142 * 104.61773 * 264.99540 * 6 4 3 8 8 C 1.34776 * 127.84000 * 140.41039 * 7 6 4 9 9 O 1.21597 * 120.00609 * 179.97438 * 8 7 6 10 10 C 1.47532 * 119.99720 * 359.97438 * 8 7 6 11 11 C 1.36595 * 125.76821 * 179.97438 * 10 8 7 12 12 N 1.34820 * 106.83334 * 179.97438 * 11 10 8 13 13 C 1.46505 * 126.59083 * 180.02562 * 12 11 10 14 14 C 1.52997 * 109.47040 * 124.99677 * 13 12 11 15 15 N 1.40208 * 106.81495 * 0.02562 * 12 11 10 16 16 N 1.28763 * 108.36528 * 359.74606 * 15 12 11 17 17 C 1.48150 * 104.32668 * 320.41477 * 7 6 4 18 18 C 1.54290 * 110.34285 * 150.00326 * 4 3 2 19 19 H 1.08999 * 110.33916 * 359.88970 * 18 4 3 20 20 C 1.53006 * 110.34075 * 237.74317 * 18 4 3 21 21 N 1.46498 * 109.46726 * 174.99883 * 20 18 4 22 22 C 1.36939 * 119.99903 * 180.02562 * 21 20 18 23 23 H 1.07999 * 119.99744 * 0.02562 * 22 21 20 24 24 C 1.38811 * 120.00055 * 179.97438 * 22 21 20 25 25 N 1.31618 * 119.99875 * 0.02562 * 24 22 21 26 26 Si 1.86806 * 119.99879 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.46875 * 0.02562 * 26 24 22 28 28 H 1.48501 * 109.46547 * 120.00159 * 26 24 22 29 29 H 1.48494 * 109.47400 * 240.00123 * 26 24 22 30 30 H 1.09003 * 109.47057 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.46862 * 299.99681 * 1 2 3 32 32 H 1.08999 * 109.47050 * 59.99662 * 1 2 3 33 33 H 1.09003 * 109.47028 * 240.00435 * 2 1 3 34 34 H 1.08999 * 109.47050 * 120.00337 * 2 1 3 35 35 H 1.08998 * 110.40789 * 23.78536 * 6 4 3 36 36 H 1.09000 * 110.40726 * 146.09463 * 6 4 3 37 37 H 1.07999 * 126.58546 * 359.97438 * 11 10 8 38 38 H 1.08999 * 109.46793 * 245.00253 * 13 12 11 39 39 H 1.09006 * 109.47099 * 5.00150 * 13 12 11 40 40 H 1.08999 * 109.47492 * 300.00414 * 14 13 12 41 41 H 1.09006 * 109.46789 * 60.00283 * 14 13 12 42 42 H 1.09005 * 109.47203 * 179.97438 * 14 13 12 43 43 H 1.08999 * 110.40590 * 280.80034 * 17 7 6 44 44 H 1.09002 * 110.40678 * 158.36557 * 17 7 6 45 45 H 1.08995 * 109.46794 * 294.99857 * 20 18 4 46 46 H 1.09000 * 109.47314 * 54.99991 * 20 18 4 47 47 H 0.96998 * 120.00310 * 359.97438 * 21 20 18 48 48 H 0.97005 * 119.99483 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.8795 0.5887 -0.4763 6 6 3.9565 1.6149 1.4440 7 7 4.0886 3.0775 1.6389 8 6 3.7940 3.7947 2.7413 9 8 3.9592 4.9993 2.7452 10 6 3.2711 3.1180 3.9435 11 6 2.9356 3.7261 5.1197 12 7 2.5038 2.7567 5.9512 13 6 2.0358 2.9319 7.3284 14 6 0.6357 2.3317 7.4714 15 7 2.5887 1.5487 5.2445 16 7 3.0395 1.7996 4.0648 17 6 4.6178 3.5732 0.3470 18 6 3.8670 2.7513 -0.7227 19 1 2.9946 3.2985 -1.0801 20 6 4.7995 2.4185 -1.8892 21 7 5.1059 3.6423 -2.6338 22 6 5.9276 3.5904 -3.7281 23 1 6.3494 2.6471 -4.0423 24 6 6.2175 4.7499 -4.4340 25 7 5.7031 5.8993 -4.0513 26 14 7.3390 4.6791 -5.9263 27 1 7.7833 3.2792 -6.1456 28 1 6.6011 5.1571 -7.1230 29 1 8.5236 5.5446 -5.6968 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 3.2424 1.1996 2.1551 36 1 4.9251 1.1265 1.5502 37 1 3.0034 4.7810 5.3412 38 1 2.7191 2.4271 8.0113 39 1 2.0017 3.9947 7.5681 40 1 -0.0476 2.8364 6.7885 41 1 0.6698 1.2689 7.2317 42 1 0.2876 2.4616 8.4962 43 1 5.6907 3.3924 0.2813 44 1 4.4026 4.6354 0.2304 45 1 5.7231 1.9865 -1.5041 46 1 4.3120 1.7028 -2.5513 47 1 4.7262 4.4893 -2.3523 48 1 5.9054 6.7095 -4.5448 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001565954204.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:16 Heat of formation + Delta-G solvation = 13.488523 kcal Electronic energy + Delta-G solvation = -29612.836509 eV Core-core repulsion = 25511.948954 eV Total energy + Delta-G solvation = -4100.887555 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.26530 -41.12694 -39.47937 -37.67821 -36.49030 -36.23730 -33.91333 -32.44255 -32.34291 -31.65295 -30.77164 -29.36169 -27.35414 -25.66529 -25.53973 -24.01925 -23.82410 -23.10330 -22.65291 -21.30119 -20.71343 -19.21574 -18.53715 -18.13358 -17.44780 -17.30696 -16.94193 -16.62217 -16.54695 -16.09722 -15.81018 -15.58770 -15.45465 -15.17741 -15.04795 -14.85653 -14.41830 -14.00315 -13.82330 -13.65133 -13.48673 -13.36370 -13.23221 -13.12551 -12.98471 -12.87684 -12.69495 -12.43072 -12.30573 -12.24343 -12.14470 -11.97805 -11.91703 -11.70365 -11.63853 -11.32909 -11.26657 -10.94065 -10.58786 -10.39584 -9.72730 -8.98765 -7.92109 -5.21826 0.12668 0.57159 1.09823 1.49231 1.50444 1.60498 1.81666 2.15814 2.54699 2.70621 3.03809 3.33422 3.41440 3.53744 3.55045 3.78961 3.93520 3.99870 4.00784 4.01947 4.22892 4.26390 4.28803 4.30909 4.32716 4.43409 4.52178 4.54167 4.56971 4.58182 4.74306 4.75240 4.79095 4.89077 4.92363 4.97854 5.07219 5.09774 5.20945 5.25300 5.26875 5.30918 5.47831 5.52952 6.28850 6.35943 6.40452 6.77316 7.03280 7.35347 8.09714 8.32776 9.31815 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.015080 B = 0.002644 C = 0.002340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.270653 B =10588.793644 C =11965.113535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.047 3.953 3 O -0.397 6.397 4 C 0.090 3.910 5 H 0.106 0.894 6 C 0.078 3.922 7 N -0.606 5.606 8 C 0.616 3.384 9 O -0.577 6.577 10 C -0.121 4.121 11 C 0.110 3.890 12 N -0.346 5.346 13 C 0.106 3.894 14 C -0.165 4.165 15 N -0.083 5.083 16 N -0.219 5.219 17 C 0.124 3.876 18 C -0.095 4.095 19 H 0.070 0.930 20 C 0.168 3.832 21 N -0.746 5.746 22 C -0.240 4.240 23 H 0.082 0.918 24 C -0.079 4.079 25 N -0.971 5.971 26 Si 0.975 3.025 27 H -0.262 1.262 28 H -0.295 1.295 29 H -0.295 1.295 30 H 0.094 0.906 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.115 0.885 36 H 0.098 0.902 37 H 0.235 0.765 38 H 0.117 0.883 39 H 0.140 0.860 40 H 0.053 0.947 41 H 0.056 0.944 42 H 0.110 0.890 43 H 0.081 0.919 44 H 0.060 0.940 45 H 0.038 0.962 46 H 0.030 0.970 47 H 0.373 0.627 48 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.713 -12.889 26.602 31.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.029 4.029 3 O -0.317 6.317 4 C 0.031 3.969 5 H 0.123 0.877 6 C -0.045 4.045 7 N -0.337 5.337 8 C 0.404 3.596 9 O -0.456 6.456 10 C -0.260 4.260 11 C -0.048 4.048 12 N -0.132 5.132 13 C -0.012 4.012 14 C -0.223 4.223 15 N -0.063 5.063 16 N -0.092 5.092 17 C 0.001 3.999 18 C -0.115 4.115 19 H 0.089 0.911 20 C 0.041 3.959 21 N -0.388 5.388 22 C -0.372 4.372 23 H 0.099 0.901 24 C -0.271 4.271 25 N -0.622 5.622 26 Si 0.804 3.196 27 H -0.186 1.186 28 H -0.223 1.223 29 H -0.222 1.222 30 H 0.112 0.888 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.133 0.867 36 H 0.116 0.884 37 H 0.251 0.749 38 H 0.135 0.865 39 H 0.158 0.842 40 H 0.072 0.928 41 H 0.076 0.924 42 H 0.128 0.872 43 H 0.099 0.901 44 H 0.079 0.921 45 H 0.056 0.944 46 H 0.048 0.952 47 H 0.204 0.796 48 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -10.927 -13.687 26.722 31.950 hybrid contribution 0.688 1.678 -1.031 2.086 sum -10.240 -12.008 25.691 30.151 Atomic orbital electron populations 1.21740 0.93335 1.03298 1.02090 1.22755 0.96119 0.82851 1.01162 1.87980 1.20545 1.28311 1.94886 1.22992 0.81792 0.97823 0.94312 0.87655 1.23354 1.03468 0.79854 0.97815 1.48701 1.62749 1.09980 1.12234 1.16720 0.76796 0.84998 0.81055 1.90794 1.56861 1.14532 1.83438 1.21201 1.16657 0.90858 0.97304 1.23781 0.94133 0.98263 0.88601 1.50931 1.42491 1.05373 1.14386 1.22597 0.97859 1.06300 0.74448 1.22085 0.94004 1.01507 1.04697 1.81851 1.21215 1.04548 0.98676 1.74533 1.09570 1.14170 1.10941 1.22262 0.98073 0.98726 0.80802 1.22216 0.98293 0.96281 0.94681 0.91111 1.20815 0.95491 0.89005 0.90580 1.42588 1.57715 1.05978 1.32554 1.19690 1.19923 0.94105 1.03489 0.90058 1.25619 1.03199 0.95315 1.03009 1.69851 1.50386 0.98664 1.43331 0.85045 0.77840 0.77804 0.78893 1.18648 1.22276 1.22213 0.88769 0.92960 0.92861 0.92200 0.91986 0.86715 0.88447 0.74898 0.86522 0.84237 0.92799 0.92448 0.87168 0.90100 0.92145 0.94365 0.95178 0.79587 0.94109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.82 10.28 71.98 0.74 -2.08 16 2 C 0.05 1.01 6.50 71.98 0.47 1.48 16 3 O -0.40 -11.69 9.95 -148.98 -1.48 -13.17 16 4 C 0.09 2.51 3.20 31.50 0.10 2.61 16 5 H 0.11 2.43 7.38 -2.39 -0.02 2.41 16 6 C 0.08 2.08 6.42 86.54 0.56 2.64 16 7 N -0.61 -19.93 3.32 -811.70 -2.69 -22.62 16 8 C 0.62 20.80 7.91 86.69 0.69 21.48 16 9 O -0.58 -22.74 17.13 -4.02 -0.07 -22.81 16 10 C -0.12 -3.22 6.87 40.82 0.28 -2.94 16 11 C 0.11 1.99 11.27 83.85 0.95 2.93 16 12 N -0.35 -5.19 3.69 -347.08 -1.28 -6.48 16 13 C 0.11 0.47 7.26 86.38 0.63 1.10 16 14 C -0.17 -0.83 10.12 71.98 0.73 -0.10 16 15 N -0.08 -1.84 13.65 37.02 0.51 -1.33 16 16 N -0.22 -5.73 9.35 -49.99 -0.47 -6.19 16 17 C 0.12 4.52 6.41 86.53 0.55 5.07 16 18 C -0.09 -3.34 2.90 -9.88 -0.03 -3.36 16 19 H 0.07 2.85 7.98 -2.39 -0.02 2.83 16 20 C 0.17 6.63 5.38 86.38 0.46 7.09 16 21 N -0.75 -38.55 5.48 -343.45 -1.88 -40.43 16 22 C -0.24 -13.52 9.99 84.03 0.84 -12.68 16 23 H 0.08 4.32 7.83 -2.91 -0.02 4.29 16 24 C -0.08 -4.65 5.50 84.86 0.47 -4.19 16 25 N -0.97 -61.29 13.06 21.65 0.28 -61.01 16 26 Si 0.98 46.90 29.55 68.60 2.03 48.92 16 27 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 28 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 29 H -0.29 -14.21 7.11 99.48 0.71 -13.51 16 30 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.06 1.15 8.11 -2.39 -0.02 1.13 16 34 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.11 3.07 5.38 -2.39 -0.01 3.06 16 36 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 37 H 0.23 2.60 8.06 -2.91 -0.02 2.58 16 38 H 0.12 0.19 8.14 -2.39 -0.02 0.17 16 39 H 0.14 -0.26 8.08 -2.38 -0.02 -0.28 16 40 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 41 H 0.06 0.51 8.14 -2.38 -0.02 0.49 16 42 H 0.11 -0.03 8.14 -2.38 -0.02 -0.05 16 43 H 0.08 2.93 7.75 -2.39 -0.02 2.91 16 44 H 0.06 2.54 7.88 -2.39 -0.02 2.52 16 45 H 0.04 1.43 7.98 -2.39 -0.02 1.41 16 46 H 0.03 1.17 8.14 -2.39 -0.02 1.16 16 47 H 0.37 20.95 7.61 -92.71 -0.71 20.25 16 48 H 0.25 15.28 8.31 -92.70 -0.77 14.51 16 Total: -1.00 -80.19 400.27 2.63 -77.56 By element: Atomic # 1 Polarization: 28.24 SS G_CDS: 0.26 Total: 28.50 kcal Atomic # 6 Polarization: 11.62 SS G_CDS: 7.43 Total: 19.04 kcal Atomic # 7 Polarization: -132.52 SS G_CDS: -5.53 Total: -138.06 kcal Atomic # 8 Polarization: -34.43 SS G_CDS: -1.55 Total: -35.98 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 2.03 Total: 48.92 kcal Total: -80.19 2.63 -77.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001565954204.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.051 kcal (2) G-P(sol) polarization free energy of solvation -80.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds