Wall clock time and date at job start Tue Mar 31 2020 20:11:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.46892 * 2 1 4 4 C 1.52996 * 109.47530 * 239.99206 * 2 1 3 5 5 N 1.46498 * 109.47059 * 184.99929 * 4 2 1 6 6 C 1.34777 * 119.99828 * 179.72339 * 5 4 2 7 7 O 1.21283 * 120.00222 * 0.28168 * 6 5 4 8 8 C 1.50703 * 120.00290 * 180.27728 * 6 5 4 9 9 C 1.52990 * 109.47398 * 180.02562 * 8 6 5 10 10 C 1.50703 * 109.47398 * 180.02562 * 9 8 6 11 11 N 1.30502 * 125.64600 * 269.69758 * 10 9 8 12 12 C 1.34136 * 109.24903 * 179.88754 * 11 10 9 13 13 C 1.34661 * 108.02242 * 0.37275 * 12 11 10 14 14 N 1.35042 * 125.64965 * 90.00131 * 10 9 8 15 15 C 1.46496 * 126.39683 * 359.93995 * 14 10 9 16 16 N 1.46906 * 109.46590 * 119.99337 * 2 1 3 17 17 C 1.46903 * 110.99854 * 275.00026 * 16 2 1 18 18 C 1.50706 * 109.46788 * 180.02562 * 17 16 2 19 19 O 1.21289 * 119.99769 * 359.97438 * 18 17 16 20 20 N 1.34774 * 119.99565 * 180.02562 * 18 17 16 21 21 C 1.37093 * 119.99800 * 179.97438 * 20 18 17 22 22 H 1.08000 * 120.00230 * 0.02562 * 21 20 18 23 23 C 1.38950 * 120.00440 * 180.02562 * 21 20 18 24 24 N 1.31414 * 119.99595 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 120.00614 * 180.02562 * 23 21 20 26 26 H 1.48508 * 109.46803 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.47533 * 119.99695 * 25 23 21 28 28 H 1.48500 * 109.47031 * 240.00136 * 25 23 21 29 29 H 1.09002 * 109.46892 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47478 * 300.00790 * 1 2 3 31 31 H 1.09000 * 109.46800 * 60.01246 * 1 2 3 32 32 H 1.09004 * 109.47066 * 65.00196 * 4 2 1 33 33 H 1.08994 * 109.46974 * 305.00344 * 4 2 1 34 34 H 0.97001 * 120.00384 * 0.02562 * 5 4 2 35 35 H 1.08998 * 109.46954 * 300.00581 * 8 6 5 36 36 H 1.09002 * 109.46946 * 59.99717 * 8 6 5 37 37 H 1.08998 * 109.47508 * 300.00200 * 9 8 6 38 38 H 1.09011 * 109.47182 * 60.00188 * 9 8 6 39 39 H 1.08004 * 125.98819 * 180.11203 * 12 11 10 40 40 H 1.08007 * 126.59038 * 179.74349 * 13 12 11 41 41 H 1.09005 * 109.46853 * 90.00493 * 15 14 10 42 42 H 1.09000 * 109.47270 * 209.99904 * 15 14 10 43 43 H 1.08995 * 109.47203 * 330.00621 * 15 14 10 44 44 H 1.00901 * 110.99482 * 151.05012 * 16 2 1 45 45 H 1.09001 * 109.47321 * 299.99877 * 17 16 2 46 46 H 1.08999 * 109.46905 * 60.00434 * 17 16 2 47 47 H 0.96997 * 120.00270 * 359.97438 * 20 18 17 48 48 H 0.97007 * 120.00346 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7214 -1.2491 5 7 3.5001 -0.8264 -1.1903 6 6 4.1727 -1.4338 -2.1879 7 8 3.5697 -1.8889 -3.1367 8 6 5.6741 -1.5475 -2.1245 9 6 6.1838 -2.2732 -3.3712 10 6 7.6851 -2.3874 -3.3075 11 7 8.5348 -1.5187 -3.7835 12 6 9.7839 -1.9458 -3.5455 13 6 9.7052 -3.1276 -2.9049 14 7 8.3740 -3.4083 -2.7536 15 6 7.8032 -4.5943 -2.1104 16 7 2.0196 -0.6924 1.1996 17 6 2.0823 0.2229 2.3470 18 6 2.5883 -0.5212 3.5559 19 8 2.8685 -1.6982 3.4702 20 7 2.7283 0.1210 4.7325 21 6 3.1880 -0.5559 5.8324 22 1 3.4384 -1.6037 5.7560 23 6 3.3320 0.1060 7.0456 24 7 3.0279 1.3811 7.1385 25 14 3.9591 -0.8161 8.5442 26 1 4.2286 -2.2300 8.1784 27 1 5.2119 -0.1819 9.0274 28 1 2.9347 -0.7699 9.6183 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5136 -0.8901 32 1 1.7518 -0.1585 -2.1369 33 1 1.6055 -1.7199 -1.2949 34 1 3.9825 -0.4627 -0.4313 35 1 6.1124 -0.5505 -2.0802 36 1 5.9587 -2.1092 -1.2348 37 1 5.7455 -3.2702 -3.4159 38 1 5.8992 -1.7110 -4.2607 39 1 10.6934 -1.4337 -3.8231 40 1 10.5333 -3.7372 -2.5745 41 1 7.6619 -5.3785 -2.8543 42 1 8.4812 -4.9483 -1.3338 43 1 6.8419 -4.3388 -1.6648 44 1 2.9173 -1.1204 1.0290 45 1 2.7588 1.0464 2.1183 46 1 1.0869 0.6165 2.5525 47 1 2.5038 1.0622 4.8011 48 1 3.1280 1.8432 7.9856 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567039576.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:40 Heat of formation + Delta-G solvation = -16.307392 kcal Electronic energy + Delta-G solvation = -28264.936491 eV Core-core repulsion = 24162.756888 eV Total energy + Delta-G solvation = -4102.179603 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.34991 -40.00571 -38.48916 -37.07109 -34.36950 -34.19178 -33.90757 -33.76267 -31.37783 -30.91332 -29.34691 -27.42504 -26.87050 -26.26755 -24.44383 -23.85451 -21.64134 -20.74684 -20.54532 -19.92139 -19.35843 -17.99827 -17.65365 -17.10611 -16.39460 -16.25621 -16.07873 -15.70472 -15.45371 -15.21109 -14.65661 -14.52066 -14.26471 -13.96000 -13.84529 -13.52460 -13.48788 -13.32730 -13.12750 -12.95333 -12.73386 -12.58809 -12.46382 -12.30407 -11.94556 -11.78305 -11.69905 -11.47758 -11.45072 -11.14052 -10.90580 -10.39047 -10.27943 -10.21855 -10.08147 -9.87194 -9.57827 -9.26394 -8.63669 -8.53904 -8.18971 -8.02309 -6.47366 -3.88414 1.74170 2.45521 2.48339 2.81617 3.05015 3.11978 3.23080 3.29790 3.83354 3.98633 4.11264 4.23709 4.36873 4.46653 4.58498 4.61738 4.73886 4.77177 4.86941 4.93672 5.03362 5.11649 5.14494 5.19780 5.25186 5.27090 5.34252 5.49897 5.61765 5.64155 5.70889 5.73514 5.74356 5.90871 5.94689 6.00511 6.13485 6.20537 6.32281 6.50256 6.88096 7.09354 7.23867 7.49917 7.51427 7.85958 8.00274 8.00499 8.54753 9.12066 9.47958 9.98860 10.70290 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.008988 B = 0.002325 C = 0.001939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3114.648812 B =12037.986414 C =14440.214106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.071 3.929 3 H 0.049 0.951 4 C 0.118 3.882 5 N -0.731 5.731 6 C 0.519 3.481 7 O -0.541 6.541 8 C -0.138 4.138 9 C -0.016 4.016 10 C 0.206 3.794 11 N -0.488 5.488 12 C -0.029 4.029 13 C -0.059 4.059 14 N -0.457 5.457 15 C 0.067 3.933 16 N -0.664 5.664 17 C 0.049 3.951 18 C 0.439 3.561 19 O -0.584 6.584 20 N -0.562 5.562 21 C -0.300 4.300 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.901 5.901 25 Si 0.929 3.071 26 H -0.268 1.268 27 H -0.281 1.281 28 H -0.281 1.281 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.056 0.944 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.400 0.600 35 H 0.103 0.897 36 H 0.094 0.906 37 H 0.086 0.914 38 H 0.103 0.897 39 H 0.170 0.830 40 H 0.174 0.826 41 H 0.078 0.922 42 H 0.088 0.912 43 H 0.090 0.910 44 H 0.346 0.654 45 H 0.044 0.956 46 H 0.088 0.912 47 H 0.392 0.608 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.620 -4.308 -18.935 20.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.040 4.040 3 H 0.067 0.933 4 C -0.006 4.006 5 N -0.384 5.384 6 C 0.305 3.695 7 O -0.418 6.418 8 C -0.179 4.179 9 C -0.056 4.056 10 C -0.056 4.056 11 N -0.207 5.207 12 C -0.178 4.178 13 C -0.192 4.192 14 N -0.140 5.140 15 C -0.075 4.075 16 N -0.299 5.299 17 C -0.084 4.084 18 C 0.224 3.776 19 O -0.468 6.468 20 N -0.199 5.199 21 C -0.429 4.429 22 H 0.121 0.879 23 C -0.179 4.179 24 N -0.542 5.542 25 Si 0.756 3.244 26 H -0.192 1.192 27 H -0.207 1.207 28 H -0.207 1.207 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.093 0.907 33 H 0.097 0.903 34 H 0.235 0.765 35 H 0.121 0.879 36 H 0.113 0.887 37 H 0.105 0.895 38 H 0.122 0.878 39 H 0.187 0.813 40 H 0.191 0.809 41 H 0.097 0.903 42 H 0.107 0.893 43 H 0.109 0.891 44 H 0.168 0.832 45 H 0.062 0.938 46 H 0.106 0.894 47 H 0.226 0.774 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.504 -4.968 -19.672 21.023 hybrid contribution 1.548 0.192 1.656 2.275 sum 7.052 -4.776 -18.016 19.928 Atomic orbital electron populations 1.21737 0.93356 1.02966 1.01586 1.21821 0.97175 0.95967 0.88998 0.93295 1.21613 0.79226 1.02048 0.97666 1.46075 1.08254 1.59999 1.24044 1.20492 0.89715 0.77226 0.82032 1.90712 1.70413 1.47639 1.33053 1.21642 0.92210 1.04051 0.99978 1.19681 0.84032 1.02655 0.99214 1.23236 0.96058 0.86385 0.99915 1.70262 1.00277 1.27907 1.22240 1.22316 0.95820 0.95450 1.04167 1.22727 0.85701 1.01464 1.09339 1.45332 1.06628 1.18326 1.43738 1.22120 1.00834 0.86020 0.98565 1.60133 1.34728 1.32300 1.02733 1.21764 1.01546 0.93793 0.91274 1.19788 0.85096 0.88202 0.84464 1.90524 1.55429 1.16090 1.84762 1.41873 1.57601 1.12460 1.07968 1.19743 1.39930 0.96465 0.86771 0.87873 1.25272 0.97610 0.95782 0.99266 1.69620 1.48567 1.08869 1.27136 0.85804 0.78262 0.79607 0.80697 1.19217 1.20739 1.20697 0.91517 0.91976 0.92452 0.90742 0.90286 0.76476 0.87901 0.88745 0.89531 0.87842 0.81318 0.80877 0.90309 0.89307 0.89133 0.83241 0.93825 0.89357 0.77446 0.91865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 9.41 37.16 0.35 -1.09 16 2 C 0.07 0.79 2.81 -67.71 -0.19 0.60 16 3 H 0.05 0.51 7.80 -51.93 -0.40 0.10 16 4 C 0.12 1.27 5.31 -4.04 -0.02 1.24 16 5 N -0.73 -7.50 4.99 -60.30 -0.30 -7.81 16 6 C 0.52 5.74 7.83 -10.98 -0.09 5.66 16 7 O -0.54 -7.69 15.98 5.55 0.09 -7.60 16 8 C -0.14 -1.21 5.68 -27.89 -0.16 -1.37 16 9 C -0.02 -0.15 4.60 -27.89 -0.13 -0.28 16 10 C 0.21 2.20 7.16 -155.41 -1.11 1.09 16 11 N -0.49 -6.12 11.25 -10.81 -0.12 -6.24 16 12 C -0.03 -0.30 11.87 -17.81 -0.21 -0.51 16 13 C -0.06 -0.51 11.58 -16.56 -0.19 -0.70 16 14 N -0.46 -4.02 3.15 -121.28 -0.38 -4.40 16 15 C 0.07 0.36 10.79 59.84 0.65 1.01 16 16 N -0.66 -9.80 5.93 -107.98 -0.64 -10.44 16 17 C 0.05 0.80 5.97 -4.97 -0.03 0.77 16 18 C 0.44 9.92 7.82 -10.98 -0.09 9.84 16 19 O -0.58 -15.26 15.78 5.55 0.09 -15.17 16 20 N -0.56 -13.80 5.29 -10.96 -0.06 -13.86 16 21 C -0.30 -8.16 9.68 -14.94 -0.14 -8.30 16 22 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -24.03 13.05 55.50 0.72 -23.30 16 25 Si 0.93 20.61 29.55 -169.99 -5.02 15.59 16 26 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 27 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 28 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.68 7.45 -51.93 -0.39 0.29 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.40 3.70 7.37 -40.82 -0.30 3.40 16 35 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.09 0.75 7.66 -51.93 -0.40 0.35 16 38 H 0.10 1.07 8.10 -51.92 -0.42 0.65 16 39 H 0.17 1.32 8.06 -52.48 -0.42 0.90 16 40 H 0.17 0.92 8.06 -52.48 -0.42 0.49 16 41 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.09 0.46 7.66 -51.93 -0.40 0.06 16 44 H 0.35 5.20 6.41 -39.29 -0.25 4.95 16 45 H 0.04 0.63 8.06 -51.93 -0.42 0.21 16 46 H 0.09 1.36 7.44 -51.93 -0.39 0.97 16 47 H 0.39 9.20 7.90 -40.82 -0.32 8.88 16 48 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 LS Contribution 404.85 15.07 6.10 6.10 Total: -1.00 -35.12 404.85 -8.41 -43.53 By element: Atomic # 1 Polarization: 22.59 SS G_CDS: -7.43 Total: 15.16 kcal Atomic # 6 Polarization: 9.90 SS G_CDS: -1.46 Total: 8.44 kcal Atomic # 7 Polarization: -65.27 SS G_CDS: -0.78 Total: -66.05 kcal Atomic # 8 Polarization: -22.95 SS G_CDS: 0.18 Total: -22.77 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -35.12 -8.41 -43.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567039576.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.225 kcal (2) G-P(sol) polarization free energy of solvation -35.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds