Wall clock time and date at job start Tue Mar 31 2020 20:11:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.46892 * 2 1 4 4 C 1.52996 * 109.47530 * 239.99206 * 2 1 3 5 5 N 1.46498 * 109.47059 * 184.99929 * 4 2 1 6 6 C 1.34777 * 119.99828 * 179.72339 * 5 4 2 7 7 O 1.21283 * 120.00222 * 0.28168 * 6 5 4 8 8 C 1.50703 * 120.00290 * 180.27728 * 6 5 4 9 9 C 1.52990 * 109.47398 * 180.02562 * 8 6 5 10 10 C 1.50703 * 109.47398 * 180.02562 * 9 8 6 11 11 N 1.30502 * 125.64600 * 269.69758 * 10 9 8 12 12 C 1.34136 * 109.24903 * 179.88754 * 11 10 9 13 13 C 1.34661 * 108.02242 * 0.37275 * 12 11 10 14 14 N 1.35042 * 125.64965 * 90.00131 * 10 9 8 15 15 C 1.46496 * 126.39683 * 359.93995 * 14 10 9 16 16 N 1.46906 * 109.46590 * 119.99337 * 2 1 3 17 17 C 1.46903 * 110.99854 * 275.00026 * 16 2 1 18 18 C 1.50706 * 109.46788 * 180.02562 * 17 16 2 19 19 O 1.21289 * 119.99769 * 359.97438 * 18 17 16 20 20 N 1.34774 * 119.99565 * 180.02562 * 18 17 16 21 21 C 1.37093 * 119.99800 * 179.97438 * 20 18 17 22 22 H 1.08000 * 120.00230 * 0.02562 * 21 20 18 23 23 C 1.38950 * 120.00440 * 180.02562 * 21 20 18 24 24 N 1.31414 * 119.99595 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 120.00614 * 180.02562 * 23 21 20 26 26 H 1.48508 * 109.46803 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.47533 * 119.99695 * 25 23 21 28 28 H 1.48500 * 109.47031 * 240.00136 * 25 23 21 29 29 H 1.09002 * 109.46892 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47478 * 300.00790 * 1 2 3 31 31 H 1.09000 * 109.46800 * 60.01246 * 1 2 3 32 32 H 1.09004 * 109.47066 * 65.00196 * 4 2 1 33 33 H 1.08994 * 109.46974 * 305.00344 * 4 2 1 34 34 H 0.97001 * 120.00384 * 0.02562 * 5 4 2 35 35 H 1.08998 * 109.46954 * 300.00581 * 8 6 5 36 36 H 1.09002 * 109.46946 * 59.99717 * 8 6 5 37 37 H 1.08998 * 109.47508 * 300.00200 * 9 8 6 38 38 H 1.09011 * 109.47182 * 60.00188 * 9 8 6 39 39 H 1.08004 * 125.98819 * 180.11203 * 12 11 10 40 40 H 1.08007 * 126.59038 * 179.74349 * 13 12 11 41 41 H 1.09005 * 109.46853 * 90.00493 * 15 14 10 42 42 H 1.09000 * 109.47270 * 209.99904 * 15 14 10 43 43 H 1.08995 * 109.47203 * 330.00621 * 15 14 10 44 44 H 1.00901 * 110.99482 * 151.05012 * 16 2 1 45 45 H 1.09001 * 109.47321 * 299.99877 * 17 16 2 46 46 H 1.08999 * 109.46905 * 60.00434 * 17 16 2 47 47 H 0.96997 * 120.00270 * 359.97438 * 20 18 17 48 48 H 0.97007 * 120.00346 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7214 -1.2491 5 7 3.5001 -0.8264 -1.1903 6 6 4.1727 -1.4338 -2.1879 7 8 3.5697 -1.8889 -3.1367 8 6 5.6741 -1.5475 -2.1245 9 6 6.1838 -2.2732 -3.3712 10 6 7.6851 -2.3874 -3.3075 11 7 8.5348 -1.5187 -3.7835 12 6 9.7839 -1.9458 -3.5455 13 6 9.7052 -3.1276 -2.9049 14 7 8.3740 -3.4083 -2.7536 15 6 7.8032 -4.5943 -2.1104 16 7 2.0196 -0.6924 1.1996 17 6 2.0823 0.2229 2.3470 18 6 2.5883 -0.5212 3.5559 19 8 2.8685 -1.6982 3.4702 20 7 2.7283 0.1210 4.7325 21 6 3.1880 -0.5559 5.8324 22 1 3.4384 -1.6037 5.7560 23 6 3.3320 0.1060 7.0456 24 7 3.0279 1.3811 7.1385 25 14 3.9591 -0.8161 8.5442 26 1 4.2286 -2.2300 8.1784 27 1 5.2119 -0.1819 9.0274 28 1 2.9347 -0.7699 9.6183 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5136 -0.8901 32 1 1.7518 -0.1585 -2.1369 33 1 1.6055 -1.7199 -1.2949 34 1 3.9825 -0.4627 -0.4313 35 1 6.1124 -0.5505 -2.0802 36 1 5.9587 -2.1092 -1.2348 37 1 5.7455 -3.2702 -3.4159 38 1 5.8992 -1.7110 -4.2607 39 1 10.6934 -1.4337 -3.8231 40 1 10.5333 -3.7372 -2.5745 41 1 7.6619 -5.3785 -2.8543 42 1 8.4812 -4.9483 -1.3338 43 1 6.8419 -4.3388 -1.6648 44 1 2.9173 -1.1204 1.0290 45 1 2.7588 1.0464 2.1183 46 1 1.0869 0.6165 2.5525 47 1 2.5038 1.0622 4.8011 48 1 3.1280 1.8432 7.9856 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567039576.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:39 Heat of formation + Delta-G solvation = -42.580088 kcal Electronic energy + Delta-G solvation = -28266.075760 eV Core-core repulsion = 24162.756888 eV Total energy + Delta-G solvation = -4103.318873 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.04388 -40.93800 -40.15308 -38.24655 -35.97974 -35.03846 -34.95576 -34.64254 -33.27324 -32.07984 -30.08290 -28.18043 -27.96918 -27.38111 -25.81440 -24.95953 -22.32163 -21.67967 -21.43978 -21.09641 -20.62566 -19.91869 -18.54635 -17.99520 -17.53273 -17.18672 -17.00505 -16.83024 -16.51318 -16.41361 -16.21989 -15.68524 -15.41116 -15.24822 -14.91102 -14.54669 -14.32325 -14.24566 -13.94860 -13.77927 -13.66735 -13.50456 -13.42534 -13.39876 -13.26110 -13.02098 -12.92180 -12.78072 -12.56183 -12.39188 -12.20487 -12.11269 -11.86944 -11.50930 -11.02499 -10.96348 -10.56335 -10.33812 -10.15939 -10.01000 -9.37119 -9.33775 -8.46664 -5.95025 1.06019 1.36688 1.42541 1.56063 1.57376 1.87933 2.04289 2.06033 2.24670 2.29201 2.87509 3.21175 3.37689 3.49636 3.70668 3.76396 3.85737 3.99648 4.09448 4.13106 4.19376 4.27205 4.38513 4.40181 4.45529 4.46906 4.60048 4.60803 4.64467 4.66778 4.69376 4.84486 4.91239 4.94164 4.99996 5.06154 5.30573 5.34375 5.41651 5.46595 5.83850 5.88370 6.09141 6.22891 6.36838 6.39974 6.60305 7.13227 7.13702 7.14239 7.57081 8.11956 8.70833 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.008988 B = 0.002325 C = 0.001939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3114.648812 B =12037.986414 C =14440.214106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.077 3.923 3 H 0.068 0.932 4 C 0.123 3.877 5 N -0.725 5.725 6 C 0.520 3.480 7 O -0.575 6.575 8 C -0.127 4.127 9 C -0.009 4.009 10 C 0.190 3.810 11 N -0.527 5.527 12 C -0.059 4.059 13 C -0.050 4.050 14 N -0.458 5.458 15 C 0.060 3.940 16 N -0.679 5.679 17 C 0.064 3.936 18 C 0.438 3.562 19 O -0.623 6.623 20 N -0.573 5.573 21 C -0.331 4.331 22 H 0.079 0.921 23 C -0.013 4.013 24 N -0.920 5.920 25 Si 0.991 3.009 26 H -0.273 1.273 27 H -0.271 1.271 28 H -0.273 1.273 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.064 0.936 34 H 0.407 0.593 35 H 0.107 0.893 36 H 0.108 0.892 37 H 0.091 0.909 38 H 0.088 0.912 39 H 0.183 0.817 40 H 0.207 0.793 41 H 0.091 0.909 42 H 0.107 0.893 43 H 0.092 0.908 44 H 0.343 0.657 45 H 0.072 0.928 46 H 0.104 0.896 47 H 0.397 0.603 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.043 -4.192 -18.621 20.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.032 4.032 3 H 0.085 0.915 4 C -0.001 4.001 5 N -0.378 5.378 6 C 0.308 3.692 7 O -0.455 6.455 8 C -0.168 4.168 9 C -0.049 4.049 10 C -0.072 4.072 11 N -0.247 5.247 12 C -0.207 4.207 13 C -0.183 4.183 14 N -0.140 5.140 15 C -0.081 4.081 16 N -0.314 5.314 17 C -0.069 4.069 18 C 0.225 3.775 19 O -0.509 6.509 20 N -0.210 5.210 21 C -0.461 4.461 22 H 0.097 0.903 23 C -0.213 4.213 24 N -0.561 5.561 25 Si 0.815 3.185 26 H -0.197 1.197 27 H -0.196 1.196 28 H -0.198 1.198 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.099 0.901 32 H 0.102 0.898 33 H 0.082 0.918 34 H 0.243 0.757 35 H 0.126 0.874 36 H 0.126 0.874 37 H 0.110 0.890 38 H 0.107 0.893 39 H 0.200 0.800 40 H 0.224 0.776 41 H 0.109 0.891 42 H 0.125 0.875 43 H 0.111 0.889 44 H 0.164 0.836 45 H 0.090 0.910 46 H 0.122 0.878 47 H 0.230 0.770 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.911 -4.827 -19.351 20.802 hybrid contribution 1.413 0.121 1.500 2.064 sum 7.324 -4.706 -17.851 19.860 Atomic orbital electron populations 1.21751 0.92713 1.02538 1.02581 1.21862 0.97532 0.96447 0.87368 0.91462 1.21547 0.79350 1.01344 0.97854 1.46051 1.08205 1.59539 1.24008 1.20814 0.90466 0.76483 0.81485 1.90698 1.71220 1.49165 1.34373 1.21572 0.90462 1.04478 1.00271 1.19581 0.83726 1.02741 0.98804 1.23301 0.96245 0.87029 1.00655 1.70190 1.01547 1.29447 1.23524 1.22726 0.95754 0.96742 1.05444 1.23260 0.86352 1.00980 1.07712 1.45554 1.06724 1.18597 1.43110 1.22380 1.01325 0.85119 0.99301 1.60128 1.34793 1.32859 1.03668 1.21620 1.02554 0.93704 0.88984 1.20877 0.83191 0.87979 0.85428 1.90495 1.56654 1.18142 1.85609 1.41941 1.58250 1.12617 1.08231 1.19677 1.41921 0.95922 0.88542 0.90317 1.26016 0.97308 0.96595 1.01353 1.69675 1.48711 1.09682 1.28059 0.84898 0.78147 0.78105 0.77372 1.19730 1.19616 1.19802 0.92696 0.92355 0.90080 0.89755 0.91790 0.75704 0.87445 0.87379 0.89010 0.89339 0.79990 0.77627 0.89061 0.87461 0.88924 0.83584 0.91022 0.87799 0.76961 0.91338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 9.41 71.98 0.68 -1.91 16 2 C 0.08 1.55 2.81 44.91 0.13 1.68 16 3 H 0.07 1.16 7.80 -2.39 -0.02 1.14 16 4 C 0.12 2.46 5.31 86.38 0.46 2.92 16 5 N -0.73 -14.02 4.99 -463.07 -2.31 -16.33 16 6 C 0.52 11.19 7.83 87.66 0.69 11.87 16 7 O -0.57 -16.28 15.98 -3.04 -0.05 -16.33 16 8 C -0.13 -2.16 5.68 29.85 0.17 -1.99 16 9 C -0.01 -0.17 4.60 29.85 0.14 -0.03 16 10 C 0.19 4.00 7.16 138.13 0.99 4.99 16 11 N -0.53 -13.33 11.25 -188.12 -2.12 -15.45 16 12 C -0.06 -1.19 11.87 83.52 0.99 -0.20 16 13 C -0.05 -0.77 11.58 83.08 0.96 0.20 16 14 N -0.46 -7.46 3.15 -537.62 -1.69 -9.15 16 15 C 0.06 0.54 10.79 127.77 1.38 1.92 16 16 N -0.68 -19.02 5.93 -495.54 -2.94 -21.96 16 17 C 0.06 1.97 5.97 85.56 0.51 2.48 16 18 C 0.44 19.68 7.82 87.66 0.69 20.36 16 19 O -0.62 -32.91 15.78 -3.06 -0.05 -32.96 16 20 N -0.57 -28.22 5.29 -306.99 -1.62 -29.84 16 21 C -0.33 -18.26 9.68 84.04 0.81 -17.45 16 22 H 0.08 4.65 7.16 -2.91 -0.02 4.63 16 23 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 24 N -0.92 -48.53 13.05 21.66 0.28 -48.25 16 25 Si 0.99 41.92 29.55 68.60 2.03 43.95 16 26 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 27 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 28 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 29 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.06 1.15 7.45 -2.39 -0.02 1.13 16 31 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 33 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.41 6.90 7.37 -92.71 -0.68 6.21 16 35 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.09 1.58 7.66 -2.39 -0.02 1.56 16 38 H 0.09 1.91 8.10 -2.38 -0.02 1.89 16 39 H 0.18 2.81 8.06 -2.91 -0.02 2.78 16 40 H 0.21 1.59 8.06 -2.91 -0.02 1.57 16 41 H 0.09 0.61 8.14 -2.38 -0.02 0.59 16 42 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 43 H 0.09 0.80 7.66 -2.39 -0.02 0.78 16 44 H 0.34 9.92 6.41 -89.69 -0.58 9.35 16 45 H 0.07 1.85 8.06 -2.39 -0.02 1.84 16 46 H 0.10 2.94 7.44 -2.39 -0.02 2.93 16 47 H 0.40 18.52 7.90 -92.71 -0.73 17.78 16 48 H 0.28 13.68 8.31 -92.70 -0.77 12.91 16 Total: -1.00 -76.68 404.85 -0.41 -77.09 By element: Atomic # 1 Polarization: 45.60 SS G_CDS: -0.99 Total: 44.60 kcal Atomic # 6 Polarization: 15.58 SS G_CDS: 9.05 Total: 24.63 kcal Atomic # 7 Polarization: -130.59 SS G_CDS: -10.40 Total: -140.98 kcal Atomic # 8 Polarization: -49.19 SS G_CDS: -0.10 Total: -49.29 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.95 kcal Total: -76.68 -0.41 -77.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567039576.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.506 kcal (2) G-P(sol) polarization free energy of solvation -76.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds