Wall clock time and date at job start Tue Mar 31 2020 20:11:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.46896 * 2 1 4 4 C 1.52997 * 109.47227 * 120.00110 * 2 1 3 5 5 N 1.46496 * 109.47194 * 174.99954 * 4 2 1 6 6 C 1.34777 * 120.00271 * 179.97438 * 5 4 2 7 7 O 1.21278 * 119.99854 * 0.02562 * 6 5 4 8 8 C 1.50703 * 120.00161 * 180.02562 * 6 5 4 9 9 C 1.53000 * 109.46912 * 180.02562 * 8 6 5 10 10 C 1.50706 * 109.46735 * 180.02562 * 9 8 6 11 11 N 1.30495 * 125.65364 * 90.02413 * 10 9 8 12 12 C 1.34122 * 109.25696 * 179.97438 * 11 10 9 13 13 C 1.34672 * 108.02324 * 359.97438 * 12 11 10 14 14 N 1.35040 * 125.64668 * 269.71193 * 10 9 8 15 15 C 1.46505 * 126.39733 * 0.02562 * 14 10 9 16 16 N 1.46897 * 109.47277 * 240.00544 * 2 1 3 17 17 C 1.46899 * 111.00484 * 84.99564 * 16 2 1 18 18 C 1.50693 * 109.47522 * 179.97438 * 17 16 2 19 19 O 1.21295 * 119.99866 * 0.02562 * 18 17 16 20 20 N 1.34777 * 120.00074 * 179.97438 * 18 17 16 21 21 C 1.37097 * 119.99857 * 179.97438 * 20 18 17 22 22 H 1.08000 * 120.00245 * 0.02562 * 21 20 18 23 23 C 1.38953 * 119.99895 * 180.02562 * 21 20 18 24 24 N 1.31417 * 120.00004 * 180.02562 * 23 21 20 25 25 Si 1.86800 * 119.99974 * 0.02562 * 23 21 20 26 26 H 1.48493 * 109.47447 * 89.99519 * 25 23 21 27 27 H 1.48502 * 109.46885 * 209.99816 * 25 23 21 28 28 H 1.48506 * 109.46921 * 329.99227 * 25 23 21 29 29 H 1.09002 * 109.46986 * 299.99785 * 1 2 3 30 30 H 1.08996 * 109.46934 * 59.99737 * 1 2 3 31 31 H 1.09001 * 109.46896 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47045 * 55.00081 * 4 2 1 33 33 H 1.09001 * 109.47375 * 295.00005 * 4 2 1 34 34 H 0.97005 * 120.00266 * 0.02562 * 5 4 2 35 35 H 1.09002 * 109.47152 * 60.00245 * 8 6 5 36 36 H 1.09001 * 109.46980 * 300.00345 * 8 6 5 37 37 H 1.09001 * 109.47194 * 299.99742 * 9 8 6 38 38 H 1.08992 * 109.47399 * 59.99914 * 9 8 6 39 39 H 1.08006 * 125.99118 * 180.02562 * 12 11 10 40 40 H 1.07993 * 126.59143 * 180.02562 * 13 12 11 41 41 H 1.09003 * 109.47115 * 90.00245 * 15 14 10 42 42 H 1.08996 * 109.46990 * 209.99446 * 15 14 10 43 43 H 1.08997 * 109.46997 * 329.99863 * 15 14 10 44 44 H 1.00902 * 110.99852 * 208.95267 * 16 2 1 45 45 H 1.09001 * 109.47128 * 300.00427 * 17 16 2 46 46 H 1.09003 * 109.47164 * 59.99884 * 17 16 2 47 47 H 0.96994 * 120.00344 * 0.02562 * 20 18 17 48 48 H 0.96994 * 119.99839 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5000 -0.8264 1.1905 6 6 4.1731 -1.4283 2.1911 7 8 3.5701 -1.8833 3.1398 8 6 5.6751 -1.5359 2.1310 9 6 6.1851 -2.2573 3.3801 10 6 7.6872 -2.3643 3.3203 11 7 8.5316 -1.4885 3.7923 12 6 9.7832 -1.9122 3.5624 13 6 9.7117 -3.0958 2.9240 14 7 8.3823 -3.3854 2.7745 15 6 7.8187 -4.5788 2.1385 16 7 2.0197 -0.6924 -1.1995 17 6 2.0825 0.2227 -2.3469 18 6 2.5885 -0.5213 -3.5557 19 8 2.8689 -1.6982 -3.4700 20 7 2.7286 0.1209 -4.7324 21 6 3.1895 -0.5559 -5.8320 22 1 3.4400 -1.6036 -5.7555 23 6 3.3345 0.1063 -7.0450 24 7 3.7758 -0.5425 -8.0991 25 14 2.9020 1.9187 -7.1772 26 1 4.1020 2.7377 -6.8701 27 1 2.4382 2.2176 -8.5559 28 1 1.8217 2.2416 -6.2106 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.6054 -1.7198 1.2951 33 1 1.7517 -0.1584 2.1370 34 1 3.9825 -0.4621 0.4318 35 1 6.1094 -0.5372 2.0849 36 1 5.9638 -2.0989 1.2433 37 1 5.8964 -1.6946 4.2679 38 1 5.7508 -3.2559 3.4258 39 1 10.6895 -1.3952 3.8411 40 1 10.5434 -3.7019 2.5966 41 1 7.6777 -4.3910 1.0740 42 1 8.5011 -5.4182 2.2719 43 1 6.8581 -4.8151 2.5962 44 1 2.9174 -1.1203 -1.0288 45 1 1.0871 0.6164 -2.5525 46 1 2.7588 1.0464 -2.1182 47 1 2.5041 1.0620 -4.8011 48 1 3.8773 -0.0802 -8.9457 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567039580.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:42 Heat of formation + Delta-G solvation = -8.735872 kcal Electronic energy + Delta-G solvation = -28308.812260 eV Core-core repulsion = 24206.960983 eV Total energy + Delta-G solvation = -4101.851277 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.35549 -40.04301 -38.66089 -37.17654 -34.37203 -34.24328 -33.92462 -33.82573 -31.75485 -31.08857 -29.36927 -27.42527 -26.97284 -26.39433 -24.43818 -23.72024 -21.64618 -20.79493 -20.60305 -19.90801 -19.47464 -18.48055 -17.68995 -17.10745 -16.42488 -16.32069 -16.04878 -15.76444 -15.50966 -15.29533 -14.86669 -14.61635 -14.34750 -13.92787 -13.80626 -13.53476 -13.40489 -13.23877 -13.13453 -12.99650 -12.79616 -12.72935 -12.52965 -12.32296 -12.24565 -12.07763 -11.87758 -11.61868 -11.45988 -11.25023 -10.98977 -10.64618 -10.22516 -10.11083 -10.03277 -9.87301 -9.63476 -9.30286 -8.67128 -8.64313 -8.30766 -8.23311 -6.36860 -3.88639 1.74130 2.42909 2.47859 2.80033 2.98016 3.01835 3.02588 3.10978 3.66113 3.92981 4.05100 4.10262 4.36998 4.44800 4.53990 4.58399 4.70081 4.71882 4.77309 4.85890 5.03079 5.04531 5.12758 5.15201 5.15674 5.24995 5.32461 5.44418 5.49399 5.60763 5.61973 5.65467 5.72709 5.76926 5.84838 5.87093 6.00696 6.11138 6.25657 6.49719 6.87591 6.96723 7.20059 7.41856 7.51918 7.85407 7.97430 8.07908 8.53244 8.88699 9.36047 9.75439 10.76137 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009782 B = 0.002311 C = 0.001986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2861.714412 B =12110.990054 C =14095.552673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.071 3.929 3 H 0.049 0.951 4 C 0.118 3.882 5 N -0.732 5.732 6 C 0.519 3.481 7 O -0.541 6.541 8 C -0.137 4.137 9 C -0.016 4.016 10 C 0.206 3.794 11 N -0.489 5.489 12 C -0.029 4.029 13 C -0.059 4.059 14 N -0.457 5.457 15 C 0.066 3.934 16 N -0.664 5.664 17 C 0.046 3.954 18 C 0.448 3.552 19 O -0.565 6.565 20 N -0.589 5.589 21 C -0.306 4.306 22 H 0.120 0.880 23 C 0.042 3.958 24 N -0.880 5.880 25 Si 0.880 3.120 26 H -0.271 1.271 27 H -0.276 1.276 28 H -0.269 1.269 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.400 0.600 35 H 0.102 0.898 36 H 0.095 0.905 37 H 0.103 0.897 38 H 0.086 0.914 39 H 0.170 0.830 40 H 0.174 0.826 41 H 0.082 0.918 42 H 0.087 0.913 43 H 0.090 0.910 44 H 0.348 0.652 45 H 0.090 0.910 46 H 0.045 0.955 47 H 0.371 0.629 48 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.889 0.026 21.615 22.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.039 4.039 3 H 0.067 0.933 4 C -0.006 4.006 5 N -0.384 5.384 6 C 0.306 3.694 7 O -0.418 6.418 8 C -0.178 4.178 9 C -0.055 4.055 10 C -0.057 4.057 11 N -0.207 5.207 12 C -0.178 4.178 13 C -0.192 4.192 14 N -0.140 5.140 15 C -0.076 4.076 16 N -0.299 5.299 17 C -0.087 4.087 18 C 0.234 3.766 19 O -0.447 6.447 20 N -0.228 5.228 21 C -0.435 4.435 22 H 0.137 0.863 23 C -0.161 4.161 24 N -0.520 5.520 25 Si 0.706 3.294 26 H -0.196 1.196 27 H -0.201 1.201 28 H -0.195 1.195 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.098 0.902 33 H 0.093 0.907 34 H 0.235 0.765 35 H 0.121 0.879 36 H 0.113 0.887 37 H 0.121 0.879 38 H 0.105 0.895 39 H 0.187 0.813 40 H 0.191 0.809 41 H 0.100 0.900 42 H 0.105 0.895 43 H 0.108 0.892 44 H 0.170 0.830 45 H 0.108 0.892 46 H 0.063 0.937 47 H 0.203 0.797 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.822 -0.775 22.280 22.619 hybrid contribution 1.095 1.399 -1.149 2.116 sum 4.916 0.625 21.132 21.705 Atomic orbital electron populations 1.21741 0.93309 1.03061 1.01569 1.21822 0.97197 0.95936 0.88968 0.93288 1.21610 0.79281 1.02094 0.97584 1.46070 1.08191 1.60259 1.23926 1.20500 0.89747 0.77181 0.81987 1.90712 1.70439 1.47496 1.33125 1.21635 0.92116 1.04039 1.00041 1.19678 0.84052 1.02650 0.99163 1.23220 0.96000 0.86311 1.00128 1.70248 1.00389 1.27830 1.22256 1.22313 0.95749 0.95515 1.04186 1.22732 0.85773 1.01473 1.09234 1.45333 1.06633 1.18078 1.43925 1.22137 1.00749 0.85690 0.99054 1.60109 1.34887 1.32197 1.02722 1.21795 1.01589 0.93910 0.91362 1.19683 0.84695 0.88220 0.84038 1.90569 1.53933 1.15807 1.84402 1.42209 1.59903 1.11139 1.09584 1.19424 1.40165 0.98034 0.85868 0.86284 1.25050 0.97407 0.98462 0.95217 1.69620 1.44928 1.36575 1.00863 0.86670 0.79003 0.85047 0.78662 1.19630 1.20115 1.19459 0.92401 0.92037 0.91422 0.90221 0.90710 0.76510 0.87935 0.88678 0.87898 0.89538 0.81318 0.80861 0.89981 0.89450 0.89175 0.83047 0.89234 0.93698 0.79674 0.91553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 9.42 37.16 0.35 -1.00 16 2 C 0.07 0.74 2.81 -67.71 -0.19 0.55 16 3 H 0.05 0.46 7.80 -51.93 -0.40 0.06 16 4 C 0.12 1.20 5.31 -4.05 -0.02 1.18 16 5 N -0.73 -7.18 4.99 -60.30 -0.30 -7.48 16 6 C 0.52 5.59 7.83 -10.98 -0.09 5.50 16 7 O -0.54 -7.53 15.98 5.56 0.09 -7.44 16 8 C -0.14 -1.18 5.68 -27.88 -0.16 -1.34 16 9 C -0.02 -0.15 4.81 -27.88 -0.13 -0.28 16 10 C 0.21 2.17 7.16 -155.42 -1.11 1.05 16 11 N -0.49 -6.06 11.25 -10.81 -0.12 -6.18 16 12 C -0.03 -0.30 11.87 -17.81 -0.21 -0.51 16 13 C -0.06 -0.50 11.58 -16.56 -0.19 -0.69 16 14 N -0.46 -3.99 3.15 -121.28 -0.38 -4.37 16 15 C 0.07 0.36 10.97 59.85 0.66 1.01 16 16 N -0.66 -9.28 5.93 -108.00 -0.64 -9.92 16 17 C 0.05 0.70 5.96 -4.98 -0.03 0.67 16 18 C 0.45 9.68 7.82 -10.99 -0.09 9.60 16 19 O -0.57 -14.57 15.78 5.54 0.09 -14.48 16 20 N -0.59 -13.52 5.09 -10.96 -0.06 -13.58 16 21 C -0.31 -8.45 10.16 -14.93 -0.15 -8.60 16 22 H 0.12 3.77 7.39 -52.49 -0.39 3.38 16 23 C 0.04 1.12 5.50 -17.46 -0.10 1.03 16 24 N -0.88 -25.26 13.96 55.50 0.77 -24.48 16 25 Si 0.88 18.88 27.74 -169.99 -4.71 14.16 16 26 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 27 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 28 H -0.27 -5.24 6.52 56.52 0.37 -4.87 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.62 7.45 -51.93 -0.39 0.23 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.40 3.48 7.37 -40.82 -0.30 3.18 16 35 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.10 1.04 8.10 -51.93 -0.42 0.62 16 38 H 0.09 0.73 7.02 -51.93 -0.36 0.37 16 39 H 0.17 1.31 8.06 -52.48 -0.42 0.89 16 40 H 0.17 0.92 8.06 -52.49 -0.42 0.49 16 41 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 43 H 0.09 0.42 7.04 -51.93 -0.37 0.05 16 44 H 0.35 4.98 6.41 -39.29 -0.25 4.73 16 45 H 0.09 1.24 7.44 -51.93 -0.39 0.85 16 46 H 0.05 0.58 8.06 -51.93 -0.42 0.16 16 47 H 0.37 7.43 5.76 -40.82 -0.24 7.20 16 48 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 400.87 15.07 6.04 6.04 Total: -1.00 -36.43 400.87 -8.00 -44.44 By element: Atomic # 1 Polarization: 22.45 SS G_CDS: -7.32 Total: 15.13 kcal Atomic # 6 Polarization: 9.63 SS G_CDS: -1.46 Total: 8.17 kcal Atomic # 7 Polarization: -65.29 SS G_CDS: -0.73 Total: -66.01 kcal Atomic # 8 Polarization: -22.10 SS G_CDS: 0.18 Total: -21.93 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -4.71 Total: 14.16 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -36.43 -8.00 -44.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567039580.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.701 kcal (2) G-P(sol) polarization free energy of solvation -36.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds