Wall clock time and date at job start Tue Mar 31 2020 20:23:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46495 * 109.47240 * 2 1 4 4 C 1.34957 * 126.03329 * 125.02128 * 3 2 1 5 5 C 1.35317 * 107.74055 * 179.97438 * 4 3 2 6 6 C 1.50701 * 126.03591 * 180.02562 * 5 4 3 7 7 C 1.50703 * 109.47387 * 269.97799 * 6 5 4 8 8 O 1.21277 * 119.99809 * 359.97438 * 7 6 5 9 9 N 1.34776 * 120.00062 * 180.02562 * 7 6 5 10 10 C 1.46494 * 120.00038 * 179.97438 * 9 7 6 11 11 C 1.53004 * 109.47217 * 179.97438 * 10 9 7 12 12 H 1.08997 * 109.47225 * 295.00383 * 11 10 9 13 13 C 1.52997 * 109.47050 * 174.99979 * 11 10 9 14 14 N 1.46900 * 109.47034 * 55.00409 * 11 10 9 15 15 C 1.46898 * 111.00329 * 205.00133 * 14 11 10 16 16 C 1.50696 * 109.47454 * 179.97438 * 15 14 11 17 17 O 1.21294 * 120.00024 * 359.97438 * 16 15 14 18 18 N 1.34772 * 120.00112 * 180.02562 * 16 15 14 19 19 C 1.37101 * 120.00272 * 179.97438 * 18 16 15 20 20 H 1.07997 * 119.99491 * 359.97438 * 19 18 16 21 21 C 1.38947 * 120.00252 * 179.97438 * 19 18 16 22 22 N 1.31416 * 119.99845 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00225 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47074 * 60.00109 * 23 21 19 25 25 H 1.48497 * 109.47631 * 180.02562 * 23 21 19 26 26 H 1.48513 * 109.47034 * 300.00617 * 23 21 19 27 27 C 1.39868 * 107.92640 * 0.02562 * 5 4 3 28 28 N 1.30844 * 108.19764 * 359.97438 * 27 5 4 29 29 H 1.09001 * 109.47199 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47373 * 300.00147 * 1 2 3 31 31 H 1.09005 * 109.47107 * 59.99639 * 1 2 3 32 32 H 1.09000 * 109.47373 * 239.99852 * 2 1 3 33 33 H 1.09005 * 109.47107 * 120.00361 * 2 1 3 34 34 H 1.07995 * 126.12756 * 0.02562 * 4 3 2 35 35 H 1.09002 * 109.46861 * 29.97707 * 6 5 4 36 36 H 1.09005 * 109.47196 * 149.97635 * 6 5 4 37 37 H 0.97001 * 119.99803 * 0.02562 * 9 7 6 38 38 H 1.09002 * 109.47398 * 299.99975 * 10 9 7 39 39 H 1.09000 * 109.47035 * 60.00318 * 10 9 7 40 40 H 1.08997 * 109.47436 * 300.00274 * 13 11 10 41 41 H 1.09003 * 109.46779 * 60.00432 * 13 11 10 42 42 H 1.09007 * 109.47306 * 180.02562 * 13 11 10 43 43 H 1.00908 * 110.99685 * 328.95529 * 14 11 10 44 44 H 1.09001 * 109.46712 * 299.99793 * 15 14 11 45 45 H 1.09006 * 109.47333 * 59.99492 * 15 14 11 46 46 H 0.97000 * 120.00444 * 359.97438 * 18 16 15 47 47 H 0.96998 * 119.99850 * 179.97438 * 22 21 19 48 48 H 1.07995 * 125.89923 * 180.25722 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8734 1.9209 0.8938 5 6 3.0724 3.2133 0.5456 6 6 3.9566 4.1992 1.2649 7 6 3.1545 4.9167 2.3198 8 8 1.9805 4.6538 2.4723 9 7 3.7418 5.8514 3.0932 10 6 2.9620 6.5493 4.1183 11 6 3.8597 7.5502 4.8486 12 1 4.6358 7.0123 5.3930 13 6 3.0189 8.3662 5.8324 14 7 4.4831 8.4527 3.8714 15 6 5.7413 9.0041 4.3917 16 6 6.3504 9.9224 3.3638 17 8 5.7917 10.0997 2.3019 18 7 7.5166 10.5458 3.6239 19 6 8.0711 11.3809 2.6886 20 1 7.5736 11.5387 1.7431 21 6 9.2732 12.0240 2.9570 22 7 9.8789 11.8315 4.1073 23 14 10.0283 13.1623 1.6829 24 1 9.0857 14.2716 1.3895 25 1 11.3006 13.7192 2.2086 26 1 10.2993 12.4005 0.4371 27 6 2.3125 3.4725 -0.5997 28 7 1.6804 2.3748 -0.9277 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.3197 1.4122 1.7354 35 1 4.7842 3.6687 1.7358 36 1 4.3486 4.9237 0.5510 37 1 4.6805 6.0624 2.9704 38 1 2.1344 7.0795 3.6471 39 1 2.5700 5.8251 4.8324 40 1 2.2428 8.9041 5.2880 41 1 2.5564 7.6965 6.5575 42 1 3.6583 9.0796 6.3524 43 1 4.6306 7.9846 2.9897 44 1 5.5423 9.5629 5.3062 45 1 6.4334 8.1899 4.6067 46 1 7.9638 10.4038 4.4729 47 1 10.7182 12.2802 4.2945 48 1 2.2604 4.4144 -1.1253 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567069806.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:42 Heat of formation + Delta-G solvation = 2.709672 kcal Electronic energy + Delta-G solvation = -28054.931263 eV Core-core repulsion = 23953.576302 eV Total energy + Delta-G solvation = -4101.354961 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.43768 -39.69528 -38.40944 -36.95470 -34.89116 -34.10524 -33.68830 -32.21316 -31.30685 -30.79383 -30.37987 -27.69839 -26.55988 -25.53656 -24.06383 -23.88350 -21.17495 -20.88854 -20.64340 -19.98085 -19.30551 -17.95125 -17.40173 -17.12896 -16.35851 -16.00205 -15.70309 -15.56378 -15.29911 -14.90885 -14.52562 -14.50010 -14.29092 -13.91944 -13.74753 -13.47882 -13.37801 -13.30256 -12.78349 -12.68614 -12.55848 -12.46688 -12.45726 -11.91690 -11.85969 -11.78397 -11.71965 -11.64627 -11.42188 -11.06986 -10.85620 -10.69535 -10.45712 -10.23237 -9.93572 -9.56809 -9.52140 -9.14237 -8.54899 -8.49268 -8.13962 -7.98550 -6.43858 -3.84800 1.71995 2.29173 2.56520 2.64129 3.18810 3.24850 3.25355 3.29300 3.87566 4.03945 4.14069 4.27309 4.53407 4.59532 4.65390 4.74685 4.76828 4.85977 4.96806 5.00781 5.08425 5.18989 5.23440 5.25357 5.29875 5.33150 5.48880 5.55026 5.60205 5.67802 5.75393 5.77022 5.78030 5.91377 5.94730 5.99020 6.19215 6.27449 6.39218 6.48675 6.81909 7.14728 7.39595 7.53102 7.54313 7.57475 8.03738 8.19562 8.58643 9.15599 9.51621 10.02930 10.73647 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.015389 B = 0.001879 C = 0.001726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.076058 B =14900.316324 C =16219.485138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.132 3.868 3 N -0.374 5.374 4 C 0.067 3.933 5 C -0.218 4.218 6 C -0.062 4.062 7 C 0.514 3.486 8 O -0.534 6.534 9 N -0.735 5.735 10 C 0.119 3.881 11 C 0.072 3.928 12 H 0.048 0.952 13 C -0.138 4.138 14 N -0.664 5.664 15 C 0.049 3.951 16 C 0.439 3.561 17 O -0.582 6.582 18 N -0.562 5.562 19 C -0.301 4.301 20 H 0.103 0.897 21 C 0.023 3.977 22 N -0.902 5.902 23 Si 0.931 3.069 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.274 1.274 27 C 0.064 3.936 28 N -0.297 5.297 29 H 0.073 0.927 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.094 0.906 34 H 0.169 0.831 35 H 0.097 0.903 36 H 0.105 0.895 37 H 0.399 0.601 38 H 0.077 0.923 39 H 0.071 0.929 40 H 0.066 0.934 41 H 0.055 0.945 42 H 0.061 0.939 43 H 0.348 0.652 44 H 0.087 0.913 45 H 0.043 0.957 46 H 0.392 0.608 47 H 0.272 0.728 48 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.331 -22.746 0.261 25.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.011 3.989 3 N -0.156 5.156 4 C -0.080 4.080 5 C -0.230 4.230 6 C -0.104 4.104 7 C 0.300 3.700 8 O -0.410 6.410 9 N -0.388 5.388 10 C -0.004 4.004 11 C -0.039 4.039 12 H 0.066 0.934 13 C -0.197 4.197 14 N -0.299 5.299 15 C -0.083 4.083 16 C 0.224 3.776 17 O -0.467 6.467 18 N -0.199 5.199 19 C -0.430 4.430 20 H 0.121 0.879 21 C -0.179 4.179 22 N -0.543 5.543 23 Si 0.758 3.242 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.122 4.122 28 N -0.117 5.117 29 H 0.092 0.908 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.101 0.899 33 H 0.112 0.888 34 H 0.187 0.813 35 H 0.116 0.884 36 H 0.123 0.877 37 H 0.234 0.766 38 H 0.095 0.905 39 H 0.089 0.911 40 H 0.085 0.915 41 H 0.074 0.926 42 H 0.080 0.920 43 H 0.169 0.831 44 H 0.106 0.894 45 H 0.061 0.939 46 H 0.225 0.775 47 H 0.082 0.918 48 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -13.627 -22.919 -0.914 26.679 hybrid contribution 2.424 0.333 0.599 2.519 sum -11.203 -22.585 -0.314 25.213 Atomic orbital electron populations 1.22055 0.93789 1.02717 1.03799 1.21649 0.96161 0.77564 1.03530 1.48586 1.35537 1.10140 1.21386 1.22220 0.95350 0.94740 0.95655 1.19387 1.08359 0.94260 1.01019 1.19916 0.96855 0.97211 0.96375 1.20740 0.88094 0.79294 0.81824 1.90700 1.16399 1.64611 1.69285 1.46100 1.14404 1.40878 1.37463 1.21561 0.94761 0.93910 0.90209 1.21804 0.96279 0.92063 0.93708 0.93407 1.21739 1.00184 0.99828 0.97923 1.60116 1.25912 1.38477 1.05415 1.21753 0.90105 0.97865 0.98589 1.19794 0.83200 0.85604 0.88966 1.90533 1.62720 1.66905 1.26507 1.41856 1.19345 1.40573 1.18131 1.19658 1.03919 1.20774 0.98655 0.87948 1.25259 0.96712 0.98556 0.97346 1.69603 1.18188 1.43944 1.22538 0.85918 0.78074 0.80091 0.80137 1.19872 1.20988 1.19909 1.23756 0.94995 0.97353 0.96140 1.77298 1.23484 0.97014 1.13947 0.90802 0.91961 0.91065 0.89907 0.88818 0.81336 0.88432 0.87696 0.76625 0.90461 0.91078 0.91528 0.92554 0.92016 0.83084 0.89446 0.93868 0.77475 0.91815 0.80165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.05 10.10 37.16 0.38 -0.67 16 2 C 0.13 0.82 7.23 -4.05 -0.03 0.79 16 3 N -0.37 -3.76 3.68 -61.37 -0.23 -3.99 16 4 C 0.07 0.63 11.36 -17.22 -0.20 0.44 16 5 C -0.22 -2.32 4.59 -105.05 -0.48 -2.80 16 6 C -0.06 -0.55 6.18 -29.03 -0.18 -0.73 16 7 C 0.51 6.03 7.82 -10.98 -0.09 5.94 16 8 O -0.53 -8.39 16.03 5.56 0.09 -8.30 16 9 N -0.73 -7.72 4.99 -60.30 -0.30 -8.02 16 10 C 0.12 1.34 5.31 -4.04 -0.02 1.31 16 11 C 0.07 0.82 2.81 -67.71 -0.19 0.63 16 12 H 0.05 0.50 7.80 -51.93 -0.40 0.09 16 13 C -0.14 -1.49 9.41 37.16 0.35 -1.14 16 14 N -0.66 -9.97 5.93 -107.99 -0.64 -10.61 16 15 C 0.05 0.82 5.96 -4.98 -0.03 0.79 16 16 C 0.44 9.98 7.82 -10.99 -0.09 9.90 16 17 O -0.58 -15.39 15.78 5.55 0.09 -15.30 16 18 N -0.56 -13.84 5.29 -10.97 -0.06 -13.90 16 19 C -0.30 -8.22 9.68 -14.93 -0.14 -8.37 16 20 H 0.10 2.94 7.16 -52.49 -0.38 2.57 16 21 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 22 N -0.90 -24.06 13.05 55.50 0.72 -23.33 16 23 Si 0.93 20.76 29.55 -169.99 -5.02 15.73 16 24 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 25 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 26 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 27 C 0.06 0.75 11.96 -17.36 -0.21 0.54 16 28 N -0.30 -3.70 12.42 30.62 0.38 -3.32 16 29 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.09 0.34 8.07 -51.93 -0.42 -0.08 16 34 H 0.17 1.06 8.06 -52.49 -0.42 0.64 16 35 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.40 3.65 7.37 -40.82 -0.30 3.34 16 38 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.06 0.69 7.45 -51.93 -0.39 0.30 16 43 H 0.35 5.32 6.41 -39.29 -0.25 5.07 16 44 H 0.09 1.35 7.44 -51.93 -0.39 0.97 16 45 H 0.04 0.62 8.06 -51.93 -0.42 0.20 16 46 H 0.39 9.20 7.90 -40.82 -0.32 8.88 16 47 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 48 H 0.18 1.76 8.06 -52.49 -0.42 1.33 16 LS Contribution 407.28 15.07 6.14 6.14 Total: -1.00 -35.72 407.28 -7.33 -43.04 By element: Atomic # 1 Polarization: 22.21 SS G_CDS: -7.47 Total: 14.74 kcal Atomic # 6 Polarization: 8.16 SS G_CDS: -1.02 Total: 7.13 kcal Atomic # 7 Polarization: -63.06 SS G_CDS: -0.12 Total: -63.18 kcal Atomic # 8 Polarization: -23.78 SS G_CDS: 0.18 Total: -23.60 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -35.72 -7.33 -43.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567069806.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.754 kcal (2) G-P(sol) polarization free energy of solvation -35.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.044 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds