Wall clock time and date at job start Tue Mar 31 2020 20:23:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46495 * 109.47240 * 2 1 4 4 C 1.34957 * 126.03329 * 125.02128 * 3 2 1 5 5 C 1.35317 * 107.74055 * 179.97438 * 4 3 2 6 6 C 1.50701 * 126.03591 * 180.02562 * 5 4 3 7 7 C 1.50703 * 109.47387 * 269.97799 * 6 5 4 8 8 O 1.21277 * 119.99809 * 359.97438 * 7 6 5 9 9 N 1.34776 * 120.00062 * 180.02562 * 7 6 5 10 10 C 1.46494 * 120.00038 * 179.97438 * 9 7 6 11 11 C 1.53004 * 109.47217 * 179.97438 * 10 9 7 12 12 H 1.08997 * 109.47225 * 295.00383 * 11 10 9 13 13 C 1.52997 * 109.47050 * 174.99979 * 11 10 9 14 14 N 1.46900 * 109.47034 * 55.00409 * 11 10 9 15 15 C 1.46898 * 111.00329 * 205.00133 * 14 11 10 16 16 C 1.50696 * 109.47454 * 179.97438 * 15 14 11 17 17 O 1.21294 * 120.00024 * 359.97438 * 16 15 14 18 18 N 1.34772 * 120.00112 * 180.02562 * 16 15 14 19 19 C 1.37101 * 120.00272 * 179.97438 * 18 16 15 20 20 H 1.07997 * 119.99491 * 359.97438 * 19 18 16 21 21 C 1.38947 * 120.00252 * 179.97438 * 19 18 16 22 22 N 1.31416 * 119.99845 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00225 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47074 * 60.00109 * 23 21 19 25 25 H 1.48497 * 109.47631 * 180.02562 * 23 21 19 26 26 H 1.48513 * 109.47034 * 300.00617 * 23 21 19 27 27 C 1.39868 * 107.92640 * 0.02562 * 5 4 3 28 28 N 1.30844 * 108.19764 * 359.97438 * 27 5 4 29 29 H 1.09001 * 109.47199 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47373 * 300.00147 * 1 2 3 31 31 H 1.09005 * 109.47107 * 59.99639 * 1 2 3 32 32 H 1.09000 * 109.47373 * 239.99852 * 2 1 3 33 33 H 1.09005 * 109.47107 * 120.00361 * 2 1 3 34 34 H 1.07995 * 126.12756 * 0.02562 * 4 3 2 35 35 H 1.09002 * 109.46861 * 29.97707 * 6 5 4 36 36 H 1.09005 * 109.47196 * 149.97635 * 6 5 4 37 37 H 0.97001 * 119.99803 * 0.02562 * 9 7 6 38 38 H 1.09002 * 109.47398 * 299.99975 * 10 9 7 39 39 H 1.09000 * 109.47035 * 60.00318 * 10 9 7 40 40 H 1.08997 * 109.47436 * 300.00274 * 13 11 10 41 41 H 1.09003 * 109.46779 * 60.00432 * 13 11 10 42 42 H 1.09007 * 109.47306 * 180.02562 * 13 11 10 43 43 H 1.00908 * 110.99685 * 328.95529 * 14 11 10 44 44 H 1.09001 * 109.46712 * 299.99793 * 15 14 11 45 45 H 1.09006 * 109.47333 * 59.99492 * 15 14 11 46 46 H 0.97000 * 120.00444 * 359.97438 * 18 16 15 47 47 H 0.96998 * 119.99850 * 179.97438 * 22 21 19 48 48 H 1.07995 * 125.89923 * 180.25722 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8734 1.9209 0.8938 5 6 3.0724 3.2133 0.5456 6 6 3.9566 4.1992 1.2649 7 6 3.1545 4.9167 2.3198 8 8 1.9805 4.6538 2.4723 9 7 3.7418 5.8514 3.0932 10 6 2.9620 6.5493 4.1183 11 6 3.8597 7.5502 4.8486 12 1 4.6358 7.0123 5.3930 13 6 3.0189 8.3662 5.8324 14 7 4.4831 8.4527 3.8714 15 6 5.7413 9.0041 4.3917 16 6 6.3504 9.9224 3.3638 17 8 5.7917 10.0997 2.3019 18 7 7.5166 10.5458 3.6239 19 6 8.0711 11.3809 2.6886 20 1 7.5736 11.5387 1.7431 21 6 9.2732 12.0240 2.9570 22 7 9.8789 11.8315 4.1073 23 14 10.0283 13.1623 1.6829 24 1 9.0857 14.2716 1.3895 25 1 11.3006 13.7192 2.2086 26 1 10.2993 12.4005 0.4371 27 6 2.3125 3.4725 -0.5997 28 7 1.6804 2.3748 -0.9277 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.3197 1.4122 1.7354 35 1 4.7842 3.6687 1.7358 36 1 4.3486 4.9237 0.5510 37 1 4.6805 6.0624 2.9704 38 1 2.1344 7.0795 3.6471 39 1 2.5700 5.8251 4.8324 40 1 2.2428 8.9041 5.2880 41 1 2.5564 7.6965 6.5575 42 1 3.6583 9.0796 6.3524 43 1 4.6306 7.9846 2.9897 44 1 5.5423 9.5629 5.3062 45 1 6.4334 8.1899 4.6067 46 1 7.9638 10.4038 4.4729 47 1 10.7182 12.2802 4.2945 48 1 2.2604 4.4144 -1.1253 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567069806.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:41 Heat of formation + Delta-G solvation = -24.934271 kcal Electronic energy + Delta-G solvation = -28056.129994 eV Core-core repulsion = 23953.576302 eV Total energy + Delta-G solvation = -4102.553693 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.18010 -40.66896 -40.07266 -38.14269 -35.94633 -35.49725 -34.85527 -33.26385 -32.97950 -31.91240 -31.05912 -28.48950 -28.06020 -26.54582 -25.55255 -24.63095 -21.99014 -21.62271 -21.59236 -21.11383 -20.72968 -19.88686 -18.37912 -17.87959 -17.63597 -16.97792 -16.89775 -16.60285 -16.34184 -16.26208 -15.98514 -15.54737 -15.33871 -15.11942 -14.93163 -14.47506 -14.28915 -14.11016 -14.05770 -13.67801 -13.52455 -13.44994 -13.25844 -13.15588 -12.99138 -12.89725 -12.76046 -12.60191 -12.54151 -12.39750 -12.28613 -12.10829 -11.84011 -11.47308 -11.44418 -10.90446 -10.33413 -10.30667 -10.06641 -9.98301 -9.32693 -9.29373 -8.44028 -5.92261 0.98992 1.41618 1.44050 1.54251 1.66765 1.73660 1.77488 2.08891 2.30827 2.42396 2.91832 3.23776 3.52696 3.58009 3.75663 3.97942 4.01404 4.08553 4.16255 4.20418 4.29273 4.33524 4.34852 4.43305 4.47675 4.50250 4.63969 4.67799 4.72102 4.77269 4.83408 4.89814 4.95075 4.97387 5.07925 5.19050 5.20980 5.37061 5.43823 5.51273 5.71432 5.91843 6.12816 6.19601 6.41333 6.56267 6.63380 6.76562 7.15869 7.32411 7.60061 8.15522 8.72856 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.015389 B = 0.001879 C = 0.001726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.076058 B =14900.316324 C =16219.485138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.122 3.878 3 N -0.377 5.377 4 C 0.068 3.932 5 C -0.238 4.238 6 C -0.055 4.055 7 C 0.514 3.486 8 O -0.579 6.579 9 N -0.727 5.727 10 C 0.125 3.875 11 C 0.080 3.920 12 H 0.071 0.929 13 C -0.138 4.138 14 N -0.681 5.681 15 C 0.065 3.935 16 C 0.437 3.563 17 O -0.623 6.623 18 N -0.572 5.572 19 C -0.334 4.334 20 H 0.078 0.922 21 C -0.011 4.011 22 N -0.919 5.919 23 Si 0.990 3.010 24 H -0.275 1.275 25 H -0.271 1.271 26 H -0.271 1.271 27 C 0.043 3.957 28 N -0.334 5.334 29 H 0.101 0.899 30 H 0.045 0.955 31 H 0.047 0.953 32 H 0.093 0.907 33 H 0.126 0.874 34 H 0.203 0.797 35 H 0.129 0.871 36 H 0.114 0.886 37 H 0.408 0.592 38 H 0.054 0.946 39 H 0.081 0.919 40 H 0.051 0.949 41 H 0.080 0.920 42 H 0.058 0.942 43 H 0.345 0.655 44 H 0.103 0.897 45 H 0.075 0.925 46 H 0.397 0.603 47 H 0.277 0.723 48 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.161 -24.271 1.652 26.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.003 3.997 3 N -0.159 5.159 4 C -0.079 4.079 5 C -0.250 4.250 6 C -0.095 4.095 7 C 0.302 3.698 8 O -0.458 6.458 9 N -0.380 5.380 10 C 0.001 3.999 11 C -0.030 4.030 12 H 0.089 0.911 13 C -0.197 4.197 14 N -0.317 5.317 15 C -0.067 4.067 16 C 0.225 3.775 17 O -0.510 6.510 18 N -0.209 5.209 19 C -0.463 4.463 20 H 0.096 0.904 21 C -0.211 4.211 22 N -0.560 5.560 23 Si 0.814 3.186 24 H -0.200 1.200 25 H -0.196 1.196 26 H -0.196 1.196 27 C -0.143 4.143 28 N -0.156 5.156 29 H 0.120 0.880 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.111 0.889 33 H 0.144 0.856 34 H 0.220 0.780 35 H 0.147 0.853 36 H 0.133 0.867 37 H 0.244 0.756 38 H 0.073 0.927 39 H 0.099 0.901 40 H 0.070 0.930 41 H 0.099 0.901 42 H 0.077 0.923 43 H 0.165 0.835 44 H 0.121 0.879 45 H 0.093 0.907 46 H 0.231 0.769 47 H 0.086 0.914 48 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -12.438 -24.450 0.503 27.437 hybrid contribution 1.979 0.747 0.187 2.123 sum -10.459 -23.703 0.690 25.917 Atomic orbital electron populations 1.22013 0.94153 1.03891 1.01794 1.22027 0.95918 0.76145 1.05657 1.48940 1.35293 1.10872 1.20820 1.22804 0.94537 0.94640 0.95902 1.19669 1.08997 0.95282 1.01009 1.19953 0.96828 0.97132 0.95635 1.21255 0.87668 0.79009 0.81893 1.90683 1.18396 1.66109 1.70639 1.46054 1.14746 1.40243 1.37001 1.21464 0.94220 0.93915 0.90346 1.21835 0.96545 0.91596 0.93005 0.91127 1.21758 0.99728 1.00122 0.98060 1.60101 1.25314 1.40056 1.06230 1.21609 0.91011 0.97566 0.96548 1.20905 0.82102 0.85042 0.89480 1.90506 1.63564 1.68154 1.28771 1.41914 1.20187 1.40900 1.17936 1.19616 1.05019 1.22859 0.98843 0.90373 1.25982 0.96559 0.99397 0.99169 1.69659 1.18459 1.44355 1.23485 0.85031 0.77519 0.78096 0.77955 1.19999 1.19582 1.19639 1.24029 0.95506 0.97607 0.97109 1.77214 1.24683 0.98008 1.15650 0.88022 0.93533 0.93392 0.88865 0.85566 0.78003 0.85285 0.86747 0.75579 0.92713 0.90058 0.93028 0.90138 0.92270 0.83460 0.87907 0.90737 0.76931 0.91353 0.79789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.94 10.10 71.98 0.73 -1.21 16 2 C 0.12 1.33 7.23 86.38 0.62 1.96 16 3 N -0.38 -7.30 3.68 -348.07 -1.28 -8.58 16 4 C 0.07 1.19 11.36 83.54 0.95 2.14 16 5 C -0.24 -4.87 4.59 -20.14 -0.09 -4.96 16 6 C -0.05 -0.88 6.18 29.10 0.18 -0.70 16 7 C 0.51 11.52 7.82 87.66 0.69 12.21 16 8 O -0.58 -18.16 16.03 -3.02 -0.05 -18.21 16 9 N -0.73 -14.15 4.99 -463.07 -2.31 -16.46 16 10 C 0.12 2.61 5.31 86.38 0.46 3.07 16 11 C 0.08 1.62 2.81 44.92 0.13 1.75 16 12 H 0.07 1.19 7.80 -2.39 -0.02 1.17 16 13 C -0.14 -2.69 9.41 71.98 0.68 -2.02 16 14 N -0.68 -19.41 5.93 -495.58 -2.94 -22.35 16 15 C 0.06 2.00 5.96 85.56 0.51 2.51 16 16 C 0.44 19.76 7.82 87.66 0.69 20.45 16 17 O -0.62 -33.41 15.78 -3.07 -0.05 -33.46 16 18 N -0.57 -28.21 5.29 -306.99 -1.62 -29.83 16 19 C -0.33 -18.51 9.68 84.04 0.81 -17.70 16 20 H 0.08 4.64 7.16 -2.91 -0.02 4.62 16 21 C -0.01 -0.58 5.50 84.92 0.47 -0.11 16 22 N -0.92 -48.37 13.05 21.66 0.28 -48.09 16 23 Si 0.99 42.21 29.55 68.60 2.03 44.24 16 24 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 25 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 26 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 27 C 0.04 1.03 11.96 85.23 1.02 2.05 16 28 N -0.33 -8.56 12.42 -57.02 -0.71 -9.27 16 29 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.05 0.80 8.14 -2.38 -0.02 0.78 16 32 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.13 0.54 8.07 -2.38 -0.02 0.53 16 34 H 0.20 1.90 8.06 -2.91 -0.02 1.88 16 35 H 0.13 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.11 1.62 8.14 -2.38 -0.02 1.60 16 37 H 0.41 6.58 7.37 -92.71 -0.68 5.90 16 38 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.06 1.19 7.45 -2.38 -0.02 1.17 16 43 H 0.34 10.15 6.41 -89.69 -0.57 9.57 16 44 H 0.10 2.92 7.44 -2.39 -0.02 2.90 16 45 H 0.07 1.88 8.06 -2.38 -0.02 1.86 16 46 H 0.40 18.47 7.90 -92.71 -0.73 17.74 16 47 H 0.28 13.73 8.31 -92.71 -0.77 12.96 16 48 H 0.19 3.88 8.06 -2.91 -0.02 3.85 16 Total: -1.00 -79.58 407.28 0.19 -79.39 By element: Atomic # 1 Polarization: 44.18 SS G_CDS: -0.99 Total: 43.19 kcal Atomic # 6 Polarization: 11.60 SS G_CDS: 7.83 Total: 19.43 kcal Atomic # 7 Polarization: -126.00 SS G_CDS: -8.58 Total: -134.58 kcal Atomic # 8 Polarization: -51.57 SS G_CDS: -0.10 Total: -51.67 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.24 kcal Total: -79.58 0.19 -79.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567069806.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.456 kcal (2) G-P(sol) polarization free energy of solvation -79.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds