Wall clock time and date at job start Tue Mar 31 2020 19:43:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.46743 * 2 1 4 4 C 1.53000 * 109.46876 * 240.00649 * 2 1 3 5 5 C 1.52997 * 109.47273 * 175.00074 * 4 2 1 6 6 N 1.46499 * 109.47555 * 179.97438 * 5 4 2 7 7 C 1.34777 * 120.00199 * 180.02562 * 6 5 4 8 8 O 1.21283 * 119.99750 * 359.97438 * 7 6 5 9 9 C 1.50702 * 119.99928 * 180.27479 * 7 6 5 10 10 C 1.50700 * 109.46869 * 179.72354 * 9 7 6 11 11 C 1.34671 * 126.59177 * 85.02341 * 10 9 7 12 12 N 1.34129 * 108.01650 * 179.97438 * 11 10 9 13 13 C 1.30501 * 109.25674 * 359.97438 * 12 11 10 14 14 N 1.35037 * 108.69972 * 359.76682 * 13 12 11 15 15 C 1.46505 * 126.39716 * 180.26505 * 14 13 12 16 16 N 1.46894 * 109.47224 * 120.00200 * 2 1 3 17 17 C 1.46900 * 111.00479 * 274.99986 * 16 2 1 18 18 C 1.50696 * 109.47279 * 179.97438 * 17 16 2 19 19 O 1.21286 * 120.00201 * 0.02562 * 18 17 16 20 20 N 1.34772 * 119.99724 * 179.97438 * 18 17 16 21 21 C 1.37105 * 119.99871 * 180.02562 * 20 18 17 22 22 H 1.07997 * 120.00138 * 359.97438 * 21 20 18 23 23 C 1.38949 * 120.00024 * 180.02562 * 21 20 18 24 24 N 1.31410 * 119.99862 * 179.97438 * 23 21 20 25 25 Si 1.86805 * 119.99796 * 359.97438 * 23 21 20 26 26 H 1.48492 * 109.47024 * 90.00594 * 25 23 21 27 27 H 1.48506 * 109.46983 * 210.00171 * 25 23 21 28 28 H 1.48494 * 109.47124 * 330.00016 * 25 23 21 29 29 H 1.08998 * 109.46848 * 299.99370 * 1 2 3 30 30 H 1.08997 * 109.47518 * 59.99533 * 1 2 3 31 31 H 1.09005 * 109.46992 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47307 * 54.99550 * 4 2 1 33 33 H 1.09005 * 109.46653 * 294.99484 * 4 2 1 34 34 H 1.08998 * 109.47382 * 59.99521 * 5 4 2 35 35 H 1.09002 * 109.47216 * 299.99958 * 5 4 2 36 36 H 0.97000 * 119.99484 * 359.97438 * 6 5 4 37 37 H 1.09004 * 109.46965 * 299.72211 * 9 7 6 38 38 H 1.08994 * 109.46990 * 59.72065 * 9 7 6 39 39 H 1.07994 * 125.98867 * 359.96171 * 11 10 9 40 40 H 1.07998 * 125.64263 * 180.02562 * 13 12 11 41 41 H 1.08998 * 109.47141 * 270.12691 * 15 14 13 42 42 H 1.09003 * 109.46846 * 30.11932 * 15 14 13 43 43 H 1.08998 * 109.46902 * 150.11911 * 15 14 13 44 44 H 1.00902 * 111.00088 * 151.04436 * 16 2 1 45 45 H 1.09001 * 109.46619 * 300.00332 * 17 16 2 46 46 H 1.09001 * 109.46826 * 60.00043 * 17 16 2 47 47 H 0.96998 * 120.00386 * 0.02562 * 20 18 17 48 48 H 0.97000 * 119.99524 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5648 -0.6132 -1.3139 6 7 4.0532 -1.3042 -2.5098 7 6 5.3741 -1.3405 -2.7749 8 8 6.1584 -0.8007 -2.0236 9 6 5.8759 -2.0460 -4.0084 10 6 7.3774 -1.9355 -4.0744 11 6 8.2692 -2.7427 -3.4688 12 7 9.4996 -2.3076 -3.7781 13 6 9.4042 -1.2618 -4.5528 14 7 8.0970 -0.9994 -4.7668 15 6 7.5508 0.0864 -5.5848 16 7 2.0197 -0.6925 1.1994 17 6 2.0826 0.2224 2.3469 18 6 2.5874 -0.5220 3.5559 19 8 2.8678 -1.6989 3.4701 20 7 2.7284 0.1202 4.7324 21 6 3.1882 -0.5570 5.8323 22 1 3.4371 -1.6052 5.7560 23 6 3.3330 0.1049 7.0453 24 7 3.7733 -0.5443 8.0996 25 14 2.9018 1.9177 7.1774 26 1 1.4725 2.0604 7.5538 27 1 3.7527 2.5546 8.2146 28 1 3.1377 2.5792 5.8690 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6053 -0.2616 -2.1370 33 1 1.7516 -1.7714 -1.2057 34 1 3.9995 -1.0728 -0.4262 35 1 3.8532 0.4371 -1.3574 36 1 3.4258 -1.7362 -3.1104 37 1 5.5904 -3.0972 -3.9672 38 1 5.4384 -1.5851 -4.8939 39 1 8.0346 -3.5914 -2.8435 40 1 10.2335 -0.7018 -4.9592 41 1 7.4061 0.9710 -4.9647 42 1 8.2459 0.3183 -6.3918 43 1 6.5943 -0.2222 -6.0066 44 1 2.9174 -1.1205 1.0286 45 1 2.7589 1.0461 2.1182 46 1 1.0871 0.6161 2.5526 47 1 2.5045 1.0615 4.8010 48 1 3.8747 -0.0820 8.9463 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567235934.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:43:30 Heat of formation + Delta-G solvation = -6.824995 kcal Electronic energy + Delta-G solvation = -28210.505219 eV Core-core repulsion = 24108.736803 eV Total energy + Delta-G solvation = -4101.768415 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.36295 -39.87054 -38.63718 -37.30400 -34.91810 -34.36056 -33.92431 -32.69043 -31.73667 -31.38159 -29.27421 -27.42779 -27.17691 -26.53767 -24.02657 -23.20623 -21.71294 -21.33757 -20.55981 -19.93794 -19.35301 -18.33963 -17.54663 -17.36547 -16.50907 -16.21125 -15.91875 -15.81112 -15.40303 -15.31951 -14.83805 -14.63064 -14.07736 -13.99029 -13.95146 -13.73482 -13.39136 -13.30828 -13.23668 -13.11486 -12.96718 -12.64062 -12.48255 -12.29794 -12.16539 -11.99752 -11.74881 -11.41246 -11.34876 -11.16517 -10.88012 -10.57083 -10.22278 -10.14780 -9.94536 -9.81129 -9.54363 -9.36330 -8.58841 -8.55579 -8.18479 -8.13275 -6.27950 -3.79226 1.68825 2.34295 2.46510 2.83031 3.04910 3.08827 3.09148 3.16995 3.77003 4.06849 4.13345 4.13611 4.25344 4.44427 4.47810 4.53653 4.59416 4.64045 4.77929 4.80649 4.87238 4.92280 4.96604 5.18339 5.23675 5.27458 5.31451 5.45513 5.50824 5.59034 5.67818 5.74297 5.79522 5.86339 5.94974 5.96602 6.03687 6.11610 6.24746 6.49900 6.90887 7.10996 7.17095 7.56834 7.61449 7.85701 7.94678 8.17852 8.62913 8.98216 9.45597 9.85848 10.85250 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011871 B = 0.002078 C = 0.001872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2358.189419 B =13469.292371 C =14951.561820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.086 3.914 3 H 0.044 0.956 4 C -0.132 4.132 5 C 0.113 3.887 6 N -0.729 5.729 7 C 0.508 3.492 8 O -0.521 6.521 9 C -0.062 4.062 10 C -0.013 4.013 11 C -0.004 4.004 12 N -0.492 5.492 13 C 0.183 3.817 14 N -0.456 5.456 15 C 0.071 3.929 16 N -0.666 5.666 17 C 0.047 3.953 18 C 0.450 3.550 19 O -0.564 6.564 20 N -0.591 5.591 21 C -0.304 4.304 22 H 0.120 0.880 23 C 0.041 3.959 24 N -0.881 5.881 25 Si 0.880 3.120 26 H -0.271 1.271 27 H -0.277 1.277 28 H -0.270 1.270 29 H 0.057 0.943 30 H 0.052 0.948 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.073 0.927 35 H 0.065 0.935 36 H 0.400 0.600 37 H 0.118 0.882 38 H 0.097 0.903 39 H 0.168 0.832 40 H 0.205 0.795 41 H 0.077 0.923 42 H 0.089 0.911 43 H 0.082 0.918 44 H 0.351 0.649 45 H 0.045 0.955 46 H 0.087 0.913 47 H 0.370 0.630 48 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.219 4.627 -32.890 33.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.025 4.025 3 H 0.062 0.938 4 C -0.170 4.170 5 C -0.011 4.011 6 N -0.382 5.382 7 C 0.293 3.707 8 O -0.396 6.396 9 C -0.103 4.103 10 C -0.128 4.128 11 C -0.153 4.153 12 N -0.210 5.210 13 C -0.099 4.099 14 N -0.140 5.140 15 C -0.072 4.072 16 N -0.301 5.301 17 C -0.086 4.086 18 C 0.235 3.765 19 O -0.446 6.446 20 N -0.230 5.230 21 C -0.433 4.433 22 H 0.137 0.863 23 C -0.162 4.162 24 N -0.521 5.521 25 Si 0.706 3.294 26 H -0.196 1.196 27 H -0.202 1.202 28 H -0.195 1.195 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.083 0.917 32 H 0.094 0.906 33 H 0.101 0.899 34 H 0.092 0.908 35 H 0.084 0.916 36 H 0.234 0.766 37 H 0.136 0.864 38 H 0.116 0.884 39 H 0.186 0.814 40 H 0.221 0.779 41 H 0.096 0.904 42 H 0.108 0.892 43 H 0.101 0.899 44 H 0.173 0.827 45 H 0.062 0.938 46 H 0.105 0.895 47 H 0.203 0.797 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.307 3.739 -31.802 32.023 hybrid contribution -0.618 2.344 -0.397 2.457 sum -0.925 6.084 -32.200 32.782 Atomic orbital electron populations 1.21790 0.94194 1.02622 1.01121 1.21459 0.96291 0.95752 0.88964 0.93797 1.21978 0.93633 1.02941 0.98451 1.21475 0.94266 0.97387 0.87958 1.45943 1.07332 1.57608 1.27348 1.20541 0.82213 0.80732 0.87260 1.90797 1.55087 1.44542 1.49162 1.20000 0.89702 1.03507 0.97139 1.20352 0.93459 0.95397 1.03551 1.22042 0.87752 1.02248 1.03233 1.70289 1.25115 1.10983 1.14578 1.24913 0.85244 0.98138 1.01591 1.45196 1.07488 1.23687 1.37618 1.22033 1.00727 0.89203 0.95209 1.60194 1.35111 1.32022 1.02767 1.21761 1.01294 0.94059 0.91457 1.19706 0.84520 0.88237 0.83990 1.90565 1.53761 1.15890 1.84348 1.42206 1.60195 1.11008 1.09634 1.19436 1.40215 0.97944 0.85689 0.86271 1.25042 0.97522 0.98399 0.95256 1.69624 1.45166 1.36558 1.00798 0.86666 0.79267 0.84989 0.78436 1.19616 1.20192 1.19546 0.92440 0.92868 0.91726 0.90645 0.89888 0.90834 0.91624 0.76568 0.86377 0.88433 0.81438 0.77875 0.90426 0.89241 0.89911 0.82744 0.93755 0.89451 0.79723 0.91637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 9.42 37.16 0.35 -1.00 16 2 C 0.09 0.91 2.65 -67.71 -0.18 0.73 16 3 H 0.04 0.45 7.80 -51.93 -0.40 0.05 16 4 C -0.13 -1.06 4.92 -26.73 -0.13 -1.19 16 5 C 0.11 1.10 5.50 -4.04 -0.02 1.08 16 6 N -0.73 -5.60 5.56 -60.29 -0.33 -5.93 16 7 C 0.51 5.10 7.82 -10.98 -0.09 5.02 16 8 O -0.52 -8.15 16.03 5.55 0.09 -8.06 16 9 C -0.06 -0.40 6.04 -29.03 -0.18 -0.58 16 10 C -0.01 -0.13 5.45 -81.60 -0.44 -0.57 16 11 C 0.00 -0.05 11.79 -17.81 -0.21 -0.26 16 12 N -0.49 -6.47 11.25 -14.67 -0.17 -6.63 16 13 C 0.18 1.78 12.56 -90.38 -1.14 0.64 16 14 N -0.46 -3.89 3.15 -121.36 -0.38 -4.27 16 15 C 0.07 0.29 11.00 59.85 0.66 0.95 16 16 N -0.67 -10.08 5.93 -108.00 -0.64 -10.72 16 17 C 0.05 0.79 5.97 -4.98 -0.03 0.76 16 18 C 0.45 10.46 7.82 -10.99 -0.09 10.37 16 19 O -0.56 -15.49 15.78 5.55 0.09 -15.40 16 20 N -0.59 -14.42 5.09 -10.97 -0.06 -14.48 16 21 C -0.30 -8.80 10.16 -14.93 -0.15 -8.95 16 22 H 0.12 3.94 7.39 -52.49 -0.39 3.55 16 23 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 24 N -0.88 -26.24 13.96 55.50 0.77 -25.46 16 25 Si 0.88 19.75 27.74 -169.99 -4.71 15.04 16 26 H -0.27 -5.93 7.11 56.52 0.40 -5.52 16 27 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 28 H -0.27 -5.54 6.52 56.52 0.37 -5.17 16 29 H 0.06 0.60 7.45 -51.93 -0.39 0.22 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.94 6.43 -51.93 -0.33 0.61 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.40 1.65 8.47 -40.82 -0.35 1.30 16 37 H 0.12 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.10 0.33 7.09 -51.93 -0.37 -0.04 16 39 H 0.17 1.83 8.06 -52.49 -0.42 1.40 16 40 H 0.20 1.16 8.06 -52.49 -0.42 0.74 16 41 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 42 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 43 H 0.08 0.20 7.11 -51.93 -0.37 -0.17 16 44 H 0.35 5.69 6.17 -39.29 -0.24 5.44 16 45 H 0.04 0.67 8.06 -51.93 -0.42 0.25 16 46 H 0.09 1.30 7.44 -51.93 -0.39 0.92 16 47 H 0.37 7.92 5.76 -40.82 -0.24 7.69 16 48 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 400.54 15.07 6.04 6.04 Total: -1.00 -40.42 400.54 -8.32 -48.74 By element: Atomic # 1 Polarization: 20.38 SS G_CDS: -7.27 Total: 13.11 kcal Atomic # 6 Polarization: 9.78 SS G_CDS: -1.74 Total: 8.04 kcal Atomic # 7 Polarization: -66.69 SS G_CDS: -0.80 Total: -67.50 kcal Atomic # 8 Polarization: -23.64 SS G_CDS: 0.18 Total: -23.46 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -4.71 Total: 15.04 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -40.42 -8.32 -48.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567235934.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.913 kcal (2) G-P(sol) polarization free energy of solvation -40.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds