Wall clock time and date at job start Tue Mar 31 2020 19:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.46743 * 2 1 4 4 C 1.53000 * 109.46876 * 240.00649 * 2 1 3 5 5 C 1.52997 * 109.47273 * 175.00074 * 4 2 1 6 6 N 1.46499 * 109.47555 * 179.97438 * 5 4 2 7 7 C 1.34777 * 120.00199 * 180.02562 * 6 5 4 8 8 O 1.21283 * 119.99750 * 359.97438 * 7 6 5 9 9 C 1.50702 * 119.99928 * 180.27479 * 7 6 5 10 10 C 1.50700 * 109.46869 * 179.72354 * 9 7 6 11 11 C 1.34671 * 126.59177 * 85.02341 * 10 9 7 12 12 N 1.34129 * 108.01650 * 179.97438 * 11 10 9 13 13 C 1.30501 * 109.25674 * 359.97438 * 12 11 10 14 14 N 1.35037 * 108.69972 * 359.76682 * 13 12 11 15 15 C 1.46505 * 126.39716 * 180.26505 * 14 13 12 16 16 N 1.46894 * 109.47224 * 120.00200 * 2 1 3 17 17 C 1.46900 * 111.00479 * 274.99986 * 16 2 1 18 18 C 1.50696 * 109.47279 * 179.97438 * 17 16 2 19 19 O 1.21286 * 120.00201 * 0.02562 * 18 17 16 20 20 N 1.34772 * 119.99724 * 179.97438 * 18 17 16 21 21 C 1.37105 * 119.99871 * 180.02562 * 20 18 17 22 22 H 1.07997 * 120.00138 * 359.97438 * 21 20 18 23 23 C 1.38949 * 120.00024 * 180.02562 * 21 20 18 24 24 N 1.31410 * 119.99862 * 179.97438 * 23 21 20 25 25 Si 1.86805 * 119.99796 * 359.97438 * 23 21 20 26 26 H 1.48492 * 109.47024 * 90.00594 * 25 23 21 27 27 H 1.48506 * 109.46983 * 210.00171 * 25 23 21 28 28 H 1.48494 * 109.47124 * 330.00016 * 25 23 21 29 29 H 1.08998 * 109.46848 * 299.99370 * 1 2 3 30 30 H 1.08997 * 109.47518 * 59.99533 * 1 2 3 31 31 H 1.09005 * 109.46992 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47307 * 54.99550 * 4 2 1 33 33 H 1.09005 * 109.46653 * 294.99484 * 4 2 1 34 34 H 1.08998 * 109.47382 * 59.99521 * 5 4 2 35 35 H 1.09002 * 109.47216 * 299.99958 * 5 4 2 36 36 H 0.97000 * 119.99484 * 359.97438 * 6 5 4 37 37 H 1.09004 * 109.46965 * 299.72211 * 9 7 6 38 38 H 1.08994 * 109.46990 * 59.72065 * 9 7 6 39 39 H 1.07994 * 125.98867 * 359.96171 * 11 10 9 40 40 H 1.07998 * 125.64263 * 180.02562 * 13 12 11 41 41 H 1.08998 * 109.47141 * 270.12691 * 15 14 13 42 42 H 1.09003 * 109.46846 * 30.11932 * 15 14 13 43 43 H 1.08998 * 109.46902 * 150.11911 * 15 14 13 44 44 H 1.00902 * 111.00088 * 151.04436 * 16 2 1 45 45 H 1.09001 * 109.46619 * 300.00332 * 17 16 2 46 46 H 1.09001 * 109.46826 * 60.00043 * 17 16 2 47 47 H 0.96998 * 120.00386 * 0.02562 * 20 18 17 48 48 H 0.97000 * 119.99524 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5648 -0.6132 -1.3139 6 7 4.0532 -1.3042 -2.5098 7 6 5.3741 -1.3405 -2.7749 8 8 6.1584 -0.8007 -2.0236 9 6 5.8759 -2.0460 -4.0084 10 6 7.3774 -1.9355 -4.0744 11 6 8.2692 -2.7427 -3.4688 12 7 9.4996 -2.3076 -3.7781 13 6 9.4042 -1.2618 -4.5528 14 7 8.0970 -0.9994 -4.7668 15 6 7.5508 0.0864 -5.5848 16 7 2.0197 -0.6925 1.1994 17 6 2.0826 0.2224 2.3469 18 6 2.5874 -0.5220 3.5559 19 8 2.8678 -1.6989 3.4701 20 7 2.7284 0.1202 4.7324 21 6 3.1882 -0.5570 5.8323 22 1 3.4371 -1.6052 5.7560 23 6 3.3330 0.1049 7.0453 24 7 3.7733 -0.5443 8.0996 25 14 2.9018 1.9177 7.1774 26 1 1.4725 2.0604 7.5538 27 1 3.7527 2.5546 8.2146 28 1 3.1377 2.5792 5.8690 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6053 -0.2616 -2.1370 33 1 1.7516 -1.7714 -1.2057 34 1 3.9995 -1.0728 -0.4262 35 1 3.8532 0.4371 -1.3574 36 1 3.4258 -1.7362 -3.1104 37 1 5.5904 -3.0972 -3.9672 38 1 5.4384 -1.5851 -4.8939 39 1 8.0346 -3.5914 -2.8435 40 1 10.2335 -0.7018 -4.9592 41 1 7.4061 0.9710 -4.9647 42 1 8.2459 0.3183 -6.3918 43 1 6.5943 -0.2222 -6.0066 44 1 2.9174 -1.1205 1.0286 45 1 2.7589 1.0461 2.1182 46 1 1.0871 0.6161 2.5526 47 1 2.5045 1.0615 4.8010 48 1 3.8747 -0.0820 8.9463 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567235934.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:43:29 Heat of formation + Delta-G solvation = -40.321860 kcal Electronic energy + Delta-G solvation = -28211.957752 eV Core-core repulsion = 24108.736803 eV Total energy + Delta-G solvation = -4103.220949 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.05688 -40.71216 -40.34475 -38.42510 -36.11308 -35.70955 -34.98462 -33.79747 -33.39285 -32.50602 -30.05219 -28.26400 -27.91682 -27.73559 -25.66426 -24.12212 -22.44269 -22.10281 -21.38957 -21.31164 -20.64678 -20.28189 -18.27790 -18.05694 -17.76687 -17.25564 -16.98440 -16.77830 -16.55637 -16.38345 -16.20786 -15.61285 -15.35592 -15.08483 -14.82461 -14.68912 -14.59561 -14.41085 -14.29740 -14.00743 -13.92348 -13.75903 -13.42129 -13.33787 -13.15962 -12.99481 -12.91255 -12.57662 -12.44248 -12.24608 -12.16022 -11.99212 -11.74160 -11.53616 -11.06876 -10.94866 -10.49311 -10.46289 -10.27419 -10.14809 -9.34041 -9.33127 -8.43526 -6.04730 0.98816 1.27888 1.33627 1.42555 1.59992 1.91179 1.92641 2.10932 2.21036 2.35306 2.71870 3.12258 3.39144 3.53954 3.80780 3.87199 3.89443 3.97620 4.03546 4.07296 4.13725 4.18213 4.33347 4.38756 4.46021 4.46551 4.53071 4.57502 4.59837 4.69633 4.71232 4.81226 4.98200 5.02813 5.06318 5.21564 5.36520 5.40373 5.49105 5.51796 5.76352 5.89443 6.08388 6.30028 6.37845 6.55465 6.57318 6.85352 7.11379 7.26662 7.36761 7.93539 8.74287 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011871 B = 0.002078 C = 0.001872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2358.189419 B =13469.292371 C =14951.561820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.082 3.918 3 H 0.055 0.945 4 C -0.117 4.117 5 C 0.116 3.884 6 N -0.711 5.711 7 C 0.506 3.494 8 O -0.586 6.586 9 C -0.054 4.054 10 C -0.010 4.010 11 C -0.049 4.049 12 N -0.542 5.542 13 C 0.177 3.823 14 N -0.455 5.455 15 C 0.063 3.937 16 N -0.685 5.685 17 C 0.061 3.939 18 C 0.446 3.554 19 O -0.615 6.615 20 N -0.591 5.591 21 C -0.330 4.330 22 H 0.054 0.946 23 C -0.017 4.017 24 N -0.934 5.934 25 Si 0.967 3.033 26 H -0.254 1.254 27 H -0.274 1.274 28 H -0.233 1.233 29 H 0.048 0.952 30 H 0.083 0.917 31 H 0.053 0.947 32 H 0.112 0.888 33 H 0.081 0.919 34 H 0.035 0.965 35 H 0.059 0.941 36 H 0.422 0.578 37 H 0.144 0.856 38 H 0.141 0.859 39 H 0.161 0.839 40 H 0.237 0.763 41 H 0.072 0.928 42 H 0.116 0.884 43 H 0.106 0.894 44 H 0.340 0.660 45 H 0.071 0.929 46 H 0.116 0.884 47 H 0.390 0.610 48 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.795 8.219 -36.510 37.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.027 4.027 3 H 0.073 0.927 4 C -0.155 4.155 5 C -0.008 4.008 6 N -0.364 5.364 7 C 0.293 3.707 8 O -0.466 6.466 9 C -0.094 4.094 10 C -0.126 4.126 11 C -0.197 4.197 12 N -0.261 5.261 13 C -0.105 4.105 14 N -0.138 5.138 15 C -0.078 4.078 16 N -0.319 5.319 17 C -0.071 4.071 18 C 0.234 3.766 19 O -0.500 6.500 20 N -0.233 5.233 21 C -0.459 4.459 22 H 0.072 0.928 23 C -0.215 4.215 24 N -0.575 5.575 25 Si 0.786 3.214 26 H -0.178 1.178 27 H -0.200 1.200 28 H -0.156 1.156 29 H 0.067 0.933 30 H 0.102 0.898 31 H 0.073 0.927 32 H 0.131 0.869 33 H 0.100 0.900 34 H 0.054 0.946 35 H 0.077 0.923 36 H 0.260 0.740 37 H 0.161 0.839 38 H 0.158 0.842 39 H 0.179 0.821 40 H 0.253 0.747 41 H 0.091 0.909 42 H 0.134 0.866 43 H 0.125 0.875 44 H 0.161 0.839 45 H 0.089 0.911 46 H 0.134 0.866 47 H 0.225 0.775 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.957 7.335 -35.497 36.367 hybrid contribution 0.199 1.106 0.684 1.316 sum -2.758 8.441 -34.812 35.927 Atomic orbital electron populations 1.21787 0.93060 1.02324 1.02249 1.21654 0.96990 0.96175 0.87896 0.92656 1.21895 0.91934 1.03011 0.98676 1.21314 0.95479 0.96701 0.87328 1.45770 1.07154 1.56712 1.26795 1.21163 0.82250 0.79786 0.87540 1.90780 1.56747 1.47526 1.51504 1.20126 0.87511 1.04969 0.96788 1.20745 0.94875 0.94665 1.02327 1.22220 0.88620 1.03746 1.05108 1.70186 1.26221 1.13101 1.16573 1.25549 0.86797 0.97469 1.00712 1.45475 1.07039 1.23948 1.37294 1.22387 1.02574 0.87612 0.95233 1.60252 1.34675 1.32785 1.04233 1.21682 1.02840 0.93783 0.88801 1.21055 0.82307 0.87978 0.85263 1.90539 1.55346 1.18667 1.85398 1.42038 1.60574 1.11764 1.08894 1.19008 1.42571 0.96019 0.88345 0.92832 1.26159 0.96366 1.05197 0.93812 1.69810 1.46213 1.39655 1.01783 0.85340 0.79585 0.76272 0.80160 1.17789 1.19953 1.15648 0.93276 0.89796 0.92747 0.86930 0.89997 0.94646 0.92307 0.74036 0.83856 0.84166 0.82137 0.74706 0.90920 0.86560 0.87528 0.83949 0.91134 0.86625 0.77467 0.91100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 9.42 71.98 0.68 -1.48 16 2 C 0.08 1.51 2.65 44.92 0.12 1.63 16 3 H 0.06 0.93 7.80 -2.39 -0.02 0.91 16 4 C -0.12 -1.52 4.92 30.59 0.15 -1.37 16 5 C 0.12 2.13 5.50 86.38 0.48 2.60 16 6 N -0.71 -9.40 5.56 -463.06 -2.57 -11.97 16 7 C 0.51 9.60 7.82 87.66 0.69 10.29 16 8 O -0.59 -18.81 16.03 -3.04 -0.05 -18.86 16 9 C -0.05 -0.56 6.04 29.10 0.18 -0.39 16 10 C -0.01 -0.19 5.45 40.95 0.22 0.03 16 11 C -0.05 -1.27 11.79 83.52 0.98 -0.29 16 12 N -0.54 -15.01 11.25 -200.32 -2.25 -17.26 16 13 C 0.18 3.40 12.56 180.26 2.26 5.66 16 14 N -0.46 -7.14 3.15 -537.88 -1.70 -8.84 16 15 C 0.06 0.33 11.00 127.77 1.41 1.74 16 16 N -0.68 -20.03 5.93 -495.59 -2.94 -22.97 16 17 C 0.06 1.94 5.97 85.56 0.51 2.45 16 18 C 0.45 21.05 7.82 87.66 0.69 21.73 16 19 O -0.62 -35.60 15.78 -3.05 -0.05 -35.64 16 20 N -0.59 -29.01 5.09 -307.00 -1.56 -30.57 16 21 C -0.33 -20.04 10.16 84.04 0.85 -19.18 16 22 H 0.05 3.87 7.39 -2.91 -0.02 3.84 16 23 C -0.02 -0.96 5.50 84.93 0.47 -0.49 16 24 N -0.93 -57.80 13.96 21.66 0.30 -57.49 16 25 Si 0.97 39.89 27.74 68.60 1.90 41.79 16 26 H -0.25 -9.81 7.11 99.48 0.71 -9.10 16 27 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 28 H -0.23 -8.17 6.52 99.48 0.65 -7.52 16 29 H 0.05 0.86 7.45 -2.39 -0.02 0.84 16 30 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 32 H 0.11 0.70 8.14 -2.39 -0.02 0.69 16 33 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 34 H 0.04 0.94 6.43 -2.39 -0.02 0.92 16 35 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.42 1.93 8.47 -92.71 -0.79 1.14 16 37 H 0.14 0.82 8.14 -2.38 -0.02 0.80 16 38 H 0.14 0.28 7.09 -2.39 -0.02 0.27 16 39 H 0.16 3.97 8.06 -2.91 -0.02 3.95 16 40 H 0.24 2.43 8.06 -2.91 -0.02 2.40 16 41 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 42 H 0.12 -0.01 8.14 -2.39 -0.02 -0.02 16 43 H 0.11 0.05 7.11 -2.39 -0.02 0.04 16 44 H 0.34 11.23 6.17 -89.69 -0.55 10.67 16 45 H 0.07 1.91 8.06 -2.39 -0.02 1.89 16 46 H 0.12 3.06 7.44 -2.39 -0.02 3.04 16 47 H 0.39 15.82 5.76 -92.71 -0.53 15.28 16 48 H 0.28 15.76 8.31 -92.71 -0.77 14.99 16 Total: -1.00 -99.69 400.54 -0.16 -99.85 By element: Atomic # 1 Polarization: 39.96 SS G_CDS: -0.93 Total: 39.03 kcal Atomic # 6 Polarization: 13.25 SS G_CDS: 9.68 Total: 22.93 kcal Atomic # 7 Polarization: -138.39 SS G_CDS: -10.72 Total: -149.11 kcal Atomic # 8 Polarization: -54.40 SS G_CDS: -0.10 Total: -54.50 kcal Atomic # 14 Polarization: 39.89 SS G_CDS: 1.90 Total: 41.79 kcal Total: -99.69 -0.16 -99.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567235934.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.532 kcal (2) G-P(sol) polarization free energy of solvation -99.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds