Wall clock time and date at job start Tue Mar 31 2020 19:43:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47559 * 2 1 4 4 C 1.53000 * 109.47146 * 120.00680 * 2 1 3 5 5 C 1.53000 * 109.47214 * 184.99844 * 4 2 1 6 6 N 1.46501 * 109.47067 * 179.97438 * 5 4 2 7 7 C 1.34777 * 119.99980 * 179.97438 * 6 5 4 8 8 O 1.21283 * 119.99531 * 0.02562 * 7 6 5 9 9 C 1.50698 * 120.00124 * 179.97438 * 7 6 5 10 10 C 1.50701 * 109.47261 * 180.02562 * 9 7 6 11 11 C 1.34670 * 126.59163 * 85.02496 * 10 9 7 12 12 N 1.34125 * 108.02092 * 179.97438 * 11 10 9 13 13 C 1.30503 * 109.25307 * 359.97438 * 12 11 10 14 14 N 1.35038 * 108.70411 * 359.77422 * 13 12 11 15 15 C 1.46499 * 126.40131 * 180.26827 * 14 13 12 16 16 N 1.46906 * 109.46889 * 240.00359 * 2 1 3 17 17 C 1.46898 * 110.99888 * 85.00162 * 16 2 1 18 18 C 1.50705 * 109.46661 * 180.02562 * 17 16 2 19 19 O 1.21288 * 120.00125 * 359.97438 * 18 17 16 20 20 N 1.34775 * 119.99549 * 179.97438 * 18 17 16 21 21 C 1.37103 * 120.00062 * 179.97438 * 20 18 17 22 22 H 1.08003 * 119.99229 * 0.02562 * 21 20 18 23 23 C 1.38942 * 120.00207 * 179.97438 * 21 20 18 24 24 N 1.31411 * 119.99885 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 120.00123 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.47090 * 89.99727 * 25 23 21 27 27 H 1.48497 * 109.47239 * 210.00393 * 25 23 21 28 28 H 1.48506 * 109.46789 * 329.99864 * 25 23 21 29 29 H 1.09002 * 109.46959 * 299.99827 * 1 2 3 30 30 H 1.09003 * 109.47335 * 59.99421 * 1 2 3 31 31 H 1.09002 * 109.47311 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46768 * 304.99510 * 4 2 1 33 33 H 1.09003 * 109.47442 * 64.99577 * 4 2 1 34 34 H 1.08994 * 109.47015 * 299.99550 * 5 4 2 35 35 H 1.09003 * 109.47135 * 59.99545 * 5 4 2 36 36 H 0.97001 * 119.99987 * 0.02562 * 6 5 4 37 37 H 1.09004 * 109.47118 * 300.00011 * 9 7 6 38 38 H 1.09003 * 109.47094 * 60.00080 * 9 7 6 39 39 H 1.07992 * 125.98685 * 359.96355 * 11 10 9 40 40 H 1.08005 * 125.64688 * 180.02562 * 13 12 11 41 41 H 1.09001 * 109.46769 * 270.11818 * 15 14 13 42 42 H 1.08996 * 109.47230 * 30.11101 * 15 14 13 43 43 H 1.08997 * 109.47109 * 150.11971 * 15 14 13 44 44 H 1.00902 * 110.99923 * 208.96103 * 16 2 1 45 45 H 1.08995 * 109.47296 * 299.99911 * 17 16 2 46 46 H 1.08997 * 109.47334 * 60.00212 * 17 16 2 47 47 H 0.97003 * 120.00664 * 0.02562 * 20 18 17 48 48 H 0.97010 * 119.99812 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5648 -0.6135 1.3136 6 7 4.0530 -1.3037 2.5100 7 6 5.3740 -1.3399 2.7752 8 8 6.1583 -0.8006 2.0236 9 6 5.8762 -2.0494 4.0062 10 6 7.3781 -1.9432 4.0697 11 6 8.0897 -0.9234 4.5866 12 7 9.3918 -1.2146 4.4497 13 6 9.5141 -2.3765 3.8682 14 7 8.2812 -2.8678 3.6188 15 6 7.9686 -4.1497 2.9822 16 7 2.0196 -0.6925 -1.1995 17 6 2.0824 0.2227 -2.3469 18 6 2.5872 -0.5217 -3.5561 19 8 2.8675 -1.6986 -3.4703 20 7 2.7271 0.1204 -4.7327 21 6 3.1869 -0.5566 -5.8327 22 1 3.4365 -1.6046 -5.7563 23 6 3.3306 0.1052 -7.0459 24 7 3.0264 1.3802 -7.1389 25 14 3.9564 -0.8175 -8.5448 26 1 2.8071 -1.4006 -9.2825 27 1 4.6902 0.1200 -9.4325 28 1 4.8694 -1.9053 -8.1109 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6054 -0.2619 2.1369 33 1 1.7516 -1.7717 1.2055 34 1 3.9994 -1.0730 0.4259 35 1 3.8532 0.4368 1.3573 36 1 3.4257 -1.7353 3.1109 37 1 5.4420 -1.5889 4.8937 38 1 5.5873 -3.0996 3.9636 39 1 7.6831 -0.0280 5.0328 40 1 10.4469 -2.8660 3.6298 41 1 7.8976 -4.0117 1.9033 42 1 8.7573 -4.8681 3.2053 43 1 7.0184 -4.5229 3.3641 44 1 2.9172 -1.1206 -1.0288 45 1 1.0870 0.6165 -2.5525 46 1 2.7588 1.0462 -2.1182 47 1 2.5033 1.0618 -4.8013 48 1 3.1264 1.8422 -7.9861 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567235935.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:43:33 Heat of formation + Delta-G solvation = -14.844901 kcal Electronic energy + Delta-G solvation = -28208.434869 eV Core-core repulsion = 24106.318684 eV Total energy + Delta-G solvation = -4102.116185 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.34327 -39.83892 -38.48444 -37.19606 -34.86852 -34.31925 -33.88656 -32.66426 -31.52746 -31.06406 -29.21859 -27.37385 -27.13994 -26.36346 -24.14881 -23.23485 -21.69504 -21.30727 -20.50171 -19.89877 -19.23908 -17.89028 -17.51446 -17.33403 -16.47550 -16.16294 -15.88691 -15.75759 -15.39284 -15.24251 -14.62632 -14.45611 -14.10689 -13.96202 -13.89385 -13.66520 -13.61854 -13.30259 -13.20616 -13.09306 -12.90576 -12.52398 -12.44084 -12.18436 -11.87909 -11.70617 -11.57095 -11.31852 -11.26804 -11.05881 -10.79705 -10.38380 -10.21194 -10.20103 -10.13303 -9.78316 -9.49600 -9.32857 -8.57601 -8.43879 -8.07616 -7.94505 -6.40206 -3.80981 1.71287 2.37181 2.50651 2.85241 3.10244 3.18946 3.27332 3.33332 3.92379 4.09310 4.16077 4.31984 4.33604 4.48147 4.51051 4.57973 4.64347 4.70901 4.84940 4.90862 4.93082 5.06164 5.11872 5.17075 5.26503 5.36385 5.38971 5.50614 5.52842 5.68354 5.78840 5.82006 5.87429 5.99800 6.04237 6.06610 6.15115 6.25000 6.34706 6.50096 6.93112 7.19355 7.23573 7.56560 7.65320 7.86287 7.97438 8.07789 8.62791 9.19310 9.55923 10.07327 10.77581 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010412 B = 0.002133 C = 0.001859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2688.543549 B =13122.366427 C =15057.639515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.085 3.915 3 H 0.045 0.955 4 C -0.131 4.131 5 C 0.113 3.887 6 N -0.729 5.729 7 C 0.507 3.493 8 O -0.521 6.521 9 C -0.063 4.063 10 C -0.012 4.012 11 C -0.008 4.008 12 N -0.494 5.494 13 C 0.184 3.816 14 N -0.454 5.454 15 C 0.069 3.931 16 N -0.666 5.666 17 C 0.050 3.950 18 C 0.441 3.559 19 O -0.584 6.584 20 N -0.564 5.564 21 C -0.299 4.299 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.930 3.070 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.270 1.270 29 H 0.052 0.948 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.400 0.600 37 H 0.117 0.883 38 H 0.099 0.901 39 H 0.166 0.834 40 H 0.205 0.795 41 H 0.080 0.920 42 H 0.090 0.910 43 H 0.083 0.917 44 H 0.348 0.652 45 H 0.086 0.914 46 H 0.044 0.956 47 H 0.392 0.608 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.240 -6.508 26.108 26.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.025 4.025 3 H 0.063 0.937 4 C -0.170 4.170 5 C -0.011 4.011 6 N -0.382 5.382 7 C 0.292 3.708 8 O -0.396 6.396 9 C -0.104 4.104 10 C -0.127 4.127 11 C -0.156 4.156 12 N -0.212 5.212 13 C -0.098 4.098 14 N -0.137 5.137 15 C -0.074 4.074 16 N -0.301 5.301 17 C -0.083 4.083 18 C 0.226 3.774 19 O -0.468 6.468 20 N -0.200 5.200 21 C -0.428 4.428 22 H 0.120 0.880 23 C -0.180 4.180 24 N -0.543 5.543 25 Si 0.757 3.243 26 H -0.204 1.204 27 H -0.209 1.209 28 H -0.194 1.194 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.094 0.906 33 H 0.099 0.901 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.234 0.766 37 H 0.135 0.865 38 H 0.117 0.883 39 H 0.184 0.816 40 H 0.222 0.778 41 H 0.099 0.901 42 H 0.108 0.892 43 H 0.102 0.898 44 H 0.170 0.830 45 H 0.104 0.896 46 H 0.062 0.938 47 H 0.225 0.775 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.045 -6.668 25.442 26.381 hybrid contribution -0.092 0.015 -0.801 0.807 sum 1.953 -6.652 24.641 25.598 Atomic orbital electron populations 1.21784 0.94236 1.02492 1.01178 1.21461 0.96273 0.95843 0.88949 0.93716 1.21976 0.93614 1.02787 0.98581 1.21481 0.94286 0.97578 0.87731 1.45949 1.07321 1.57634 1.27306 1.20533 0.82255 0.80840 0.87144 1.90798 1.55142 1.44571 1.49086 1.20004 0.89747 1.02528 0.98126 1.20360 0.91338 0.93475 1.07485 1.21975 0.88996 0.99073 1.05598 1.70273 1.19526 1.12976 1.18395 1.24912 0.88799 0.93349 1.02731 1.45215 1.07119 1.16513 1.44879 1.22076 1.03289 0.82811 0.99187 1.60212 1.34882 1.32171 1.02818 1.21726 1.01294 0.93953 0.91335 1.19813 0.84904 0.88197 0.84446 1.90513 1.55368 1.16182 1.84780 1.41868 1.57758 1.12436 1.07984 1.19696 1.39927 0.96426 0.86789 0.87961 1.25263 0.97687 0.95783 0.99250 1.69616 1.48727 1.08854 1.27120 0.85855 0.78863 0.78954 0.80601 1.20395 1.20923 1.19440 0.92864 0.92385 0.91864 0.90593 0.90077 0.91002 0.91414 0.76593 0.86527 0.88300 0.81631 0.77845 0.90106 0.89174 0.89815 0.83017 0.89558 0.93830 0.77452 0.91879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 9.41 37.16 0.35 -1.11 16 2 C 0.09 0.97 2.65 -67.71 -0.18 0.79 16 3 H 0.04 0.51 7.80 -51.93 -0.40 0.10 16 4 C -0.13 -1.13 4.92 -26.73 -0.13 -1.26 16 5 C 0.11 1.16 5.50 -4.04 -0.02 1.14 16 6 N -0.73 -5.85 5.56 -60.29 -0.33 -6.18 16 7 C 0.51 5.24 7.82 -10.99 -0.09 5.15 16 8 O -0.52 -8.30 16.03 5.56 0.09 -8.21 16 9 C -0.06 -0.42 6.04 -29.04 -0.18 -0.59 16 10 C -0.01 -0.12 5.45 -81.60 -0.44 -0.56 16 11 C -0.01 -0.09 11.79 -17.81 -0.21 -0.30 16 12 N -0.49 -6.42 11.25 -14.67 -0.17 -6.59 16 13 C 0.18 1.86 12.56 -90.38 -1.14 0.72 16 14 N -0.45 -4.16 3.15 -121.37 -0.38 -4.55 16 15 C 0.07 0.37 11.00 59.85 0.66 1.03 16 16 N -0.67 -10.55 5.93 -107.99 -0.64 -11.19 16 17 C 0.05 0.89 5.97 -4.97 -0.03 0.86 16 18 C 0.44 10.62 7.82 -10.98 -0.09 10.53 16 19 O -0.58 -16.11 15.78 5.55 0.09 -16.02 16 20 N -0.56 -14.59 5.29 -10.96 -0.06 -14.65 16 21 C -0.30 -8.48 9.68 -14.93 -0.14 -8.63 16 22 H 0.10 3.04 7.16 -52.48 -0.38 2.67 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -24.91 13.05 55.50 0.72 -24.18 16 25 Si 0.93 21.38 29.55 -169.99 -5.02 16.35 16 26 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 27 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 28 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.67 7.45 -51.93 -0.39 0.28 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.07 0.94 6.43 -51.93 -0.33 0.61 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.40 1.77 8.47 -40.82 -0.35 1.43 16 37 H 0.12 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.10 0.41 7.09 -51.93 -0.37 0.04 16 39 H 0.17 1.66 8.06 -52.49 -0.42 1.23 16 40 H 0.21 1.27 8.06 -52.48 -0.42 0.85 16 41 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 43 H 0.08 0.31 7.11 -51.93 -0.37 -0.06 16 44 H 0.35 5.84 6.17 -39.29 -0.24 5.60 16 45 H 0.09 1.42 7.44 -51.93 -0.39 1.04 16 46 H 0.04 0.72 8.05 -51.93 -0.42 0.30 16 47 H 0.39 9.70 7.90 -40.82 -0.32 9.37 16 48 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 403.66 15.07 6.08 6.08 Total: -1.00 -38.72 403.66 -8.67 -47.38 By element: Atomic # 1 Polarization: 20.80 SS G_CDS: -7.32 Total: 13.48 kcal Atomic # 6 Polarization: 10.00 SS G_CDS: -1.73 Total: 8.27 kcal Atomic # 7 Polarization: -66.48 SS G_CDS: -0.86 Total: -67.34 kcal Atomic # 8 Polarization: -24.41 SS G_CDS: 0.18 Total: -24.24 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -38.72 -8.67 -47.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567235935.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.540 kcal (2) G-P(sol) polarization free energy of solvation -38.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds