Wall clock time and date at job start Tue Mar 31 2020 19:43:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47559 * 2 1 4 4 C 1.53000 * 109.47146 * 120.00680 * 2 1 3 5 5 C 1.53000 * 109.47214 * 184.99844 * 4 2 1 6 6 N 1.46501 * 109.47067 * 179.97438 * 5 4 2 7 7 C 1.34777 * 119.99980 * 179.97438 * 6 5 4 8 8 O 1.21283 * 119.99531 * 0.02562 * 7 6 5 9 9 C 1.50698 * 120.00124 * 179.97438 * 7 6 5 10 10 C 1.50701 * 109.47261 * 180.02562 * 9 7 6 11 11 C 1.34670 * 126.59163 * 85.02496 * 10 9 7 12 12 N 1.34125 * 108.02092 * 179.97438 * 11 10 9 13 13 C 1.30503 * 109.25307 * 359.97438 * 12 11 10 14 14 N 1.35038 * 108.70411 * 359.77422 * 13 12 11 15 15 C 1.46499 * 126.40131 * 180.26827 * 14 13 12 16 16 N 1.46906 * 109.46889 * 240.00359 * 2 1 3 17 17 C 1.46898 * 110.99888 * 85.00162 * 16 2 1 18 18 C 1.50705 * 109.46661 * 180.02562 * 17 16 2 19 19 O 1.21288 * 120.00125 * 359.97438 * 18 17 16 20 20 N 1.34775 * 119.99549 * 179.97438 * 18 17 16 21 21 C 1.37103 * 120.00062 * 179.97438 * 20 18 17 22 22 H 1.08003 * 119.99229 * 0.02562 * 21 20 18 23 23 C 1.38942 * 120.00207 * 179.97438 * 21 20 18 24 24 N 1.31411 * 119.99885 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 120.00123 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.47090 * 89.99727 * 25 23 21 27 27 H 1.48497 * 109.47239 * 210.00393 * 25 23 21 28 28 H 1.48506 * 109.46789 * 329.99864 * 25 23 21 29 29 H 1.09002 * 109.46959 * 299.99827 * 1 2 3 30 30 H 1.09003 * 109.47335 * 59.99421 * 1 2 3 31 31 H 1.09002 * 109.47311 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46768 * 304.99510 * 4 2 1 33 33 H 1.09003 * 109.47442 * 64.99577 * 4 2 1 34 34 H 1.08994 * 109.47015 * 299.99550 * 5 4 2 35 35 H 1.09003 * 109.47135 * 59.99545 * 5 4 2 36 36 H 0.97001 * 119.99987 * 0.02562 * 6 5 4 37 37 H 1.09004 * 109.47118 * 300.00011 * 9 7 6 38 38 H 1.09003 * 109.47094 * 60.00080 * 9 7 6 39 39 H 1.07992 * 125.98685 * 359.96355 * 11 10 9 40 40 H 1.08005 * 125.64688 * 180.02562 * 13 12 11 41 41 H 1.09001 * 109.46769 * 270.11818 * 15 14 13 42 42 H 1.08996 * 109.47230 * 30.11101 * 15 14 13 43 43 H 1.08997 * 109.47109 * 150.11971 * 15 14 13 44 44 H 1.00902 * 110.99923 * 208.96103 * 16 2 1 45 45 H 1.08995 * 109.47296 * 299.99911 * 17 16 2 46 46 H 1.08997 * 109.47334 * 60.00212 * 17 16 2 47 47 H 0.97003 * 120.00664 * 0.02562 * 20 18 17 48 48 H 0.97010 * 119.99812 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5648 -0.6135 1.3136 6 7 4.0530 -1.3037 2.5100 7 6 5.3740 -1.3399 2.7752 8 8 6.1583 -0.8006 2.0236 9 6 5.8762 -2.0494 4.0062 10 6 7.3781 -1.9432 4.0697 11 6 8.0897 -0.9234 4.5866 12 7 9.3918 -1.2146 4.4497 13 6 9.5141 -2.3765 3.8682 14 7 8.2812 -2.8678 3.6188 15 6 7.9686 -4.1497 2.9822 16 7 2.0196 -0.6925 -1.1995 17 6 2.0824 0.2227 -2.3469 18 6 2.5872 -0.5217 -3.5561 19 8 2.8675 -1.6986 -3.4703 20 7 2.7271 0.1204 -4.7327 21 6 3.1869 -0.5566 -5.8327 22 1 3.4365 -1.6046 -5.7563 23 6 3.3306 0.1052 -7.0459 24 7 3.0264 1.3802 -7.1389 25 14 3.9564 -0.8175 -8.5448 26 1 2.8071 -1.4006 -9.2825 27 1 4.6902 0.1200 -9.4325 28 1 4.8694 -1.9053 -8.1109 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6054 -0.2619 2.1369 33 1 1.7516 -1.7717 1.2055 34 1 3.9994 -1.0730 0.4259 35 1 3.8532 0.4368 1.3573 36 1 3.4257 -1.7353 3.1109 37 1 5.4420 -1.5889 4.8937 38 1 5.5873 -3.0996 3.9636 39 1 7.6831 -0.0280 5.0328 40 1 10.4469 -2.8660 3.6298 41 1 7.8976 -4.0117 1.9033 42 1 8.7573 -4.8681 3.2053 43 1 7.0184 -4.5229 3.3641 44 1 2.9172 -1.1206 -1.0288 45 1 1.0870 0.6165 -2.5525 46 1 2.7588 1.0462 -2.1182 47 1 2.5033 1.0618 -4.8013 48 1 3.1264 1.8422 -7.9861 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567235935.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:43:32 Heat of formation + Delta-G solvation = -45.231171 kcal Electronic energy + Delta-G solvation = -28209.752516 eV Core-core repulsion = 24106.318684 eV Total energy + Delta-G solvation = -4103.433832 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.05521 -40.70139 -40.21961 -38.40407 -36.08401 -35.69104 -34.98551 -33.45437 -33.27562 -32.44799 -30.05423 -28.15990 -27.90483 -27.73864 -25.85592 -24.15082 -22.43612 -22.10683 -21.38100 -21.14922 -20.61252 -19.94493 -18.28435 -18.05862 -17.78152 -17.20616 -16.99151 -16.65143 -16.49028 -16.38073 -16.25091 -15.71299 -15.41341 -15.18760 -14.83262 -14.74492 -14.52498 -14.29726 -14.08969 -13.95505 -13.77447 -13.53116 -13.37426 -13.34747 -13.16169 -12.99262 -12.88358 -12.59127 -12.45051 -12.24758 -12.17519 -12.12524 -11.75336 -11.53238 -11.06940 -10.95685 -10.50449 -10.37564 -10.14962 -10.04666 -9.34653 -9.32486 -8.49245 -5.98379 0.99255 1.35954 1.39358 1.52509 1.60450 1.90994 2.01754 2.10669 2.27018 2.35389 2.91415 3.17718 3.49205 3.54183 3.80976 3.87021 3.89299 3.96171 4.01370 4.13028 4.14206 4.28085 4.31096 4.42310 4.45055 4.47965 4.54008 4.57172 4.60495 4.68524 4.70204 4.80525 4.96851 5.01872 5.05611 5.20534 5.37935 5.38083 5.39906 5.47726 5.77538 5.89242 6.11253 6.28108 6.39275 6.55735 6.56977 7.09417 7.10794 7.26989 7.52737 8.07861 8.68245 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010412 B = 0.002133 C = 0.001859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2688.543549 B =13122.366427 C =15057.639515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.081 3.919 3 H 0.049 0.951 4 C -0.116 4.116 5 C 0.117 3.883 6 N -0.710 5.710 7 C 0.505 3.495 8 O -0.587 6.587 9 C -0.053 4.053 10 C -0.014 4.014 11 C -0.044 4.044 12 N -0.539 5.539 13 C 0.175 3.825 14 N -0.457 5.457 15 C 0.062 3.938 16 N -0.679 5.679 17 C 0.064 3.936 18 C 0.436 3.564 19 O -0.623 6.623 20 N -0.574 5.574 21 C -0.335 4.335 22 H 0.078 0.922 23 C -0.014 4.014 24 N -0.920 5.920 25 Si 0.994 3.006 26 H -0.269 1.269 27 H -0.270 1.270 28 H -0.273 1.273 29 H 0.083 0.917 30 H 0.044 0.956 31 H 0.057 0.943 32 H 0.111 0.889 33 H 0.085 0.915 34 H 0.037 0.963 35 H 0.054 0.946 36 H 0.422 0.578 37 H 0.151 0.849 38 H 0.133 0.867 39 H 0.170 0.830 40 H 0.234 0.766 41 H 0.067 0.933 42 H 0.117 0.883 43 H 0.105 0.895 44 H 0.340 0.660 45 H 0.105 0.895 46 H 0.060 0.940 47 H 0.396 0.604 48 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.204 -7.357 27.531 28.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.029 4.029 3 H 0.067 0.933 4 C -0.154 4.154 5 C -0.008 4.008 6 N -0.364 5.364 7 C 0.292 3.708 8 O -0.466 6.466 9 C -0.094 4.094 10 C -0.130 4.130 11 C -0.191 4.191 12 N -0.258 5.258 13 C -0.107 4.107 14 N -0.139 5.139 15 C -0.079 4.079 16 N -0.313 5.313 17 C -0.068 4.068 18 C 0.224 3.776 19 O -0.510 6.510 20 N -0.211 5.211 21 C -0.464 4.464 22 H 0.096 0.904 23 C -0.214 4.214 24 N -0.561 5.561 25 Si 0.818 3.182 26 H -0.194 1.194 27 H -0.195 1.195 28 H -0.198 1.198 29 H 0.102 0.898 30 H 0.063 0.937 31 H 0.076 0.924 32 H 0.129 0.871 33 H 0.104 0.896 34 H 0.056 0.944 35 H 0.073 0.927 36 H 0.260 0.740 37 H 0.169 0.831 38 H 0.151 0.849 39 H 0.187 0.813 40 H 0.250 0.750 41 H 0.086 0.914 42 H 0.135 0.865 43 H 0.124 0.876 44 H 0.160 0.840 45 H 0.123 0.877 46 H 0.077 0.923 47 H 0.230 0.770 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.530 -7.522 26.907 27.944 hybrid contribution 0.336 0.274 -1.208 1.284 sum 0.866 -7.247 25.699 26.715 Atomic orbital electron populations 1.21776 0.93084 1.02408 1.02074 1.21657 0.97021 0.96041 0.88173 0.93276 1.21881 0.91953 1.03076 0.98451 1.21294 0.95471 0.96641 0.87366 1.45764 1.07204 1.56723 1.26694 1.21188 0.82244 0.79917 0.87410 1.90781 1.56815 1.47525 1.51478 1.20133 0.87545 1.04372 0.97332 1.20811 0.92975 0.92996 1.06200 1.22262 0.89261 1.00268 1.07343 1.70196 1.20575 1.14773 1.20212 1.25520 0.90300 0.92908 1.01999 1.45486 1.06707 1.17426 1.44261 1.22353 1.05577 0.81734 0.98202 1.60269 1.34493 1.32569 1.03991 1.21579 1.02111 0.93724 0.89430 1.20912 0.83232 0.88026 0.85459 1.90476 1.56692 1.18214 1.85620 1.41952 1.58265 1.12577 1.08286 1.19665 1.42239 0.95953 0.88574 0.90374 1.26074 0.97195 0.96656 1.01451 1.69678 1.48588 1.09712 1.28144 0.84914 0.78472 0.77799 0.77065 1.19392 1.19483 1.19832 0.89812 0.93687 0.92410 0.87073 0.89616 0.94420 0.92727 0.74006 0.83101 0.84873 0.81312 0.74987 0.91437 0.86503 0.87617 0.83956 0.87708 0.92259 0.76998 0.91249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 9.41 71.98 0.68 -1.80 16 2 C 0.08 1.68 2.65 44.91 0.12 1.80 16 3 H 0.05 1.01 7.80 -2.39 -0.02 0.99 16 4 C -0.12 -1.68 4.92 30.59 0.15 -1.53 16 5 C 0.12 2.30 5.50 86.38 0.48 2.78 16 6 N -0.71 -9.95 5.56 -463.06 -2.57 -12.52 16 7 C 0.51 9.88 7.82 87.66 0.69 10.57 16 8 O -0.59 -19.21 16.03 -3.04 -0.05 -19.26 16 9 C -0.05 -0.58 6.04 29.10 0.18 -0.40 16 10 C -0.01 -0.27 5.45 40.95 0.22 -0.04 16 11 C -0.04 -1.05 11.79 83.52 0.98 -0.07 16 12 N -0.54 -14.50 11.25 -200.32 -2.25 -16.76 16 13 C 0.17 3.52 12.56 180.26 2.26 5.78 16 14 N -0.46 -7.96 3.15 -537.89 -1.70 -9.65 16 15 C 0.06 0.56 11.00 127.77 1.41 1.97 16 16 N -0.68 -21.20 5.93 -495.58 -2.94 -24.14 16 17 C 0.06 2.28 5.97 85.56 0.51 2.79 16 18 C 0.44 21.51 7.82 87.66 0.69 22.20 16 19 O -0.62 -35.55 15.78 -3.05 -0.05 -35.60 16 20 N -0.57 -30.45 5.29 -306.99 -1.62 -32.07 16 21 C -0.33 -19.54 9.68 84.04 0.81 -18.72 16 22 H 0.08 4.85 7.16 -2.91 -0.02 4.83 16 23 C -0.01 -0.77 5.50 84.92 0.47 -0.30 16 24 N -0.92 -50.74 13.05 21.66 0.28 -50.45 16 25 Si 0.99 43.83 29.55 68.60 2.03 45.86 16 26 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 27 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 28 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 29 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.04 0.94 7.45 -2.39 -0.02 0.92 16 31 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.04 1.02 6.43 -2.39 -0.02 1.00 16 35 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.42 2.19 8.47 -92.71 -0.79 1.41 16 37 H 0.15 0.62 8.14 -2.39 -0.02 0.60 16 38 H 0.13 0.55 7.09 -2.39 -0.02 0.53 16 39 H 0.17 3.58 8.06 -2.91 -0.02 3.55 16 40 H 0.23 2.74 8.06 -2.91 -0.02 2.72 16 41 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.12 0.40 8.14 -2.39 -0.02 0.38 16 43 H 0.11 0.46 7.11 -2.39 -0.02 0.44 16 44 H 0.34 11.61 6.17 -89.69 -0.55 11.05 16 45 H 0.10 3.35 7.44 -2.39 -0.02 3.33 16 46 H 0.06 1.93 8.05 -2.39 -0.02 1.91 16 47 H 0.40 19.97 7.90 -92.71 -0.73 19.24 16 48 H 0.28 14.31 8.31 -92.70 -0.77 13.54 16 Total: -1.00 -89.30 403.66 -0.30 -89.59 By element: Atomic # 1 Polarization: 41.07 SS G_CDS: -1.07 Total: 40.00 kcal Atomic # 6 Polarization: 15.37 SS G_CDS: 9.64 Total: 25.01 kcal Atomic # 7 Polarization: -134.80 SS G_CDS: -10.80 Total: -145.60 kcal Atomic # 8 Polarization: -54.76 SS G_CDS: -0.10 Total: -54.86 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Total: -89.30 -0.30 -89.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567235935.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.363 kcal (2) G-P(sol) polarization free energy of solvation -89.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds