Wall clock time and date at job start Tue Mar 31 2020 20:23:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.47046 * 2 1 4 4 C 1.34953 * 126.03718 * 125.00175 * 3 2 1 5 5 C 1.35312 * 107.74266 * 180.24977 * 4 3 2 6 6 C 1.39863 * 107.92527 * 359.64076 * 5 4 3 7 7 C 1.50703 * 125.90145 * 180.14385 * 6 5 4 8 8 C 1.50700 * 109.47162 * 125.23311 * 7 6 5 9 9 O 1.21284 * 119.99863 * 359.97438 * 8 7 6 10 10 N 1.34774 * 120.00333 * 179.97438 * 8 7 6 11 11 C 1.46503 * 119.99657 * 0.02562 * 10 8 7 12 12 C 1.46492 * 120.00344 * 179.97438 * 10 8 7 13 13 C 1.53000 * 109.47210 * 89.99965 * 12 10 8 14 14 N 1.46903 * 109.47578 * 179.97438 * 13 12 10 15 15 C 1.46896 * 110.99978 * 180.02562 * 14 13 12 16 16 C 1.50700 * 109.46769 * 180.02562 * 15 14 13 17 17 O 1.21298 * 120.00203 * 0.02562 * 16 15 14 18 18 N 1.34776 * 120.00120 * 180.02562 * 16 15 14 19 19 C 1.37091 * 120.00349 * 180.02562 * 18 16 15 20 20 H 1.08004 * 120.00247 * 359.97438 * 19 18 16 21 21 C 1.38952 * 120.00101 * 179.97438 * 19 18 16 22 22 N 1.31406 * 120.00054 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 119.99991 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47026 * 0.02562 * 23 21 19 25 25 H 1.48496 * 109.46928 * 119.99884 * 23 21 19 26 26 H 1.48500 * 109.47276 * 240.00285 * 23 21 19 27 27 N 1.30837 * 108.19940 * 0.36269 * 6 5 4 28 28 H 1.08995 * 109.47070 * 300.00086 * 1 2 3 29 29 H 1.08998 * 109.47149 * 59.99882 * 1 2 3 30 30 H 1.09000 * 109.46813 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47688 * 240.00288 * 2 1 3 32 32 H 1.08997 * 109.47597 * 120.00405 * 2 1 3 33 33 H 1.08002 * 126.12372 * 359.97438 * 4 3 2 34 34 H 1.08008 * 126.03698 * 179.76435 * 5 4 3 35 35 H 1.09000 * 109.46707 * 245.23156 * 7 6 5 36 36 H 1.09002 * 109.47068 * 5.23288 * 7 6 5 37 37 H 1.08999 * 109.47452 * 89.99490 * 11 10 8 38 38 H 1.08995 * 109.47133 * 210.00079 * 11 10 8 39 39 H 1.09001 * 109.47141 * 329.99421 * 11 10 8 40 40 H 1.09006 * 109.47363 * 210.00056 * 12 10 8 41 41 H 1.09000 * 109.47292 * 330.00385 * 12 10 8 42 42 H 1.08993 * 109.47254 * 300.00491 * 13 12 10 43 43 H 1.09006 * 109.46913 * 60.00393 * 13 12 10 44 44 H 1.00901 * 110.99056 * 56.04589 * 14 13 12 45 45 H 1.08995 * 109.47531 * 300.00059 * 15 14 13 46 46 H 1.08996 * 109.46749 * 60.00886 * 15 14 13 47 47 H 0.97002 * 119.99963 * 359.97438 * 18 16 15 48 48 H 0.97002 * 119.99734 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8731 1.9211 0.8939 5 6 3.0673 3.2151 0.5492 6 6 2.3116 3.4728 -0.5992 7 6 2.2340 4.7889 -1.3291 8 6 2.5916 4.5815 -2.7783 9 8 2.8813 3.4740 -3.1789 10 7 2.5893 5.6266 -3.6293 11 6 2.2398 6.9644 -3.1453 12 6 2.9374 5.4250 -5.0379 13 6 1.6718 5.1022 -5.8349 14 7 2.0207 4.9006 -7.2476 15 6 0.8273 4.5887 -8.0452 16 6 1.2239 4.3884 -9.4852 17 8 2.3865 4.4946 -9.8146 18 7 0.2868 4.0913 -10.4072 19 6 0.6476 3.9086 -11.7171 20 1 1.6828 4.0031 -12.0104 21 6 -0.3184 3.6017 -12.6676 22 7 -1.5778 3.4861 -12.3108 23 14 0.1732 3.3535 -14.4526 24 1 1.6402 3.5367 -14.5921 25 1 -0.1967 1.9808 -14.8815 26 1 -0.5330 4.3451 -15.3030 27 7 1.6801 2.3750 -0.9275 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 3.3185 1.4127 1.7363 34 1 3.6964 3.9234 1.0680 35 1 1.2209 5.1846 -1.2579 36 1 2.9324 5.4952 -0.8801 37 1 3.1412 7.4756 -2.8075 38 1 1.7799 7.5342 -3.9527 39 1 1.5381 6.8788 -2.3156 40 1 3.3939 6.3326 -5.4329 41 1 3.6415 4.5973 -5.1234 42 1 1.2153 4.1947 -5.4399 43 1 0.9677 5.9299 -5.7495 44 1 2.7213 4.1815 -7.3478 45 1 0.3648 3.6775 -7.6661 46 1 0.1176 5.4129 -7.9748 47 1 -0.6428 4.0060 -10.1439 48 1 -2.2522 3.2723 -12.9744 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567498377.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:25 Heat of formation + Delta-G solvation = 13.149957 kcal Electronic energy + Delta-G solvation = -27991.201415 eV Core-core repulsion = 23890.299179 eV Total energy + Delta-G solvation = -4100.902237 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.46769 -39.88340 -38.22719 -36.32936 -34.96904 -34.89585 -33.77453 -32.06809 -31.18895 -30.20613 -29.68175 -28.21635 -26.98151 -25.73395 -24.07645 -23.43225 -22.11554 -21.38133 -20.33613 -19.26484 -18.91665 -17.84245 -17.36195 -17.20731 -16.36176 -16.11645 -15.76779 -15.53589 -15.38059 -14.68154 -14.55869 -14.34898 -14.01556 -13.93625 -13.75624 -13.56464 -13.39881 -13.16160 -13.12823 -12.80627 -12.72360 -12.56327 -12.39019 -12.32672 -12.11203 -11.89368 -11.69422 -11.46892 -11.44057 -11.07867 -10.91673 -10.70404 -10.31074 -10.18650 -9.92842 -9.47999 -9.42673 -8.85086 -8.77117 -8.39600 -8.01486 -7.91510 -6.37739 -3.78319 1.70844 2.24563 2.46021 2.53789 2.93445 3.19450 3.29557 3.37354 3.95957 4.07400 4.17024 4.34337 4.43969 4.51221 4.57278 4.62928 4.82379 4.83572 4.86096 5.06016 5.07374 5.12320 5.19485 5.24889 5.29562 5.32324 5.35329 5.42745 5.44670 5.55623 5.59491 5.71668 5.79871 5.84399 5.93562 5.98345 6.06080 6.28456 6.37250 6.42050 6.80151 7.21509 7.25305 7.55964 7.59380 7.70926 8.09003 8.10955 8.65838 9.22126 9.58934 10.10565 10.80202 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.014608 B = 0.001822 C = 0.001674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1916.302582 B =15364.782895 C =16720.164977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.130 3.870 3 N -0.372 5.372 4 C 0.049 3.951 5 C -0.267 4.267 6 C 0.078 3.922 7 C -0.056 4.056 8 C 0.513 3.487 9 O -0.518 6.518 10 N -0.618 5.618 11 C 0.076 3.924 12 C 0.119 3.881 13 C 0.046 3.954 14 N -0.667 5.667 15 C 0.052 3.948 16 C 0.442 3.558 17 O -0.583 6.583 18 N -0.565 5.565 19 C -0.298 4.298 20 H 0.104 0.896 21 C 0.020 3.980 22 N -0.902 5.902 23 Si 0.930 3.070 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.282 1.282 27 N -0.258 5.258 28 H 0.059 0.941 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.094 0.906 33 H 0.171 0.829 34 H 0.146 0.854 35 H 0.108 0.892 36 H 0.111 0.889 37 H 0.058 0.942 38 H 0.076 0.924 39 H 0.071 0.929 40 H 0.088 0.912 41 H 0.083 0.917 42 H 0.031 0.969 43 H 0.070 0.930 44 H 0.351 0.649 45 H 0.044 0.956 46 H 0.085 0.915 47 H 0.392 0.608 48 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.934 1.171 32.104 32.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.009 3.991 3 N -0.154 5.154 4 C -0.097 4.097 5 C -0.297 4.297 6 C -0.090 4.090 7 C -0.097 4.097 8 C 0.300 3.700 9 O -0.392 6.392 10 N -0.353 5.353 11 C -0.068 4.068 12 C -0.004 4.004 13 C -0.085 4.085 14 N -0.300 5.300 15 C -0.080 4.080 16 C 0.228 3.772 17 O -0.467 6.467 18 N -0.202 5.202 19 C -0.427 4.427 20 H 0.122 0.878 21 C -0.181 4.181 22 N -0.544 5.544 23 Si 0.757 3.243 24 H -0.192 1.192 25 H -0.208 1.208 26 H -0.208 1.208 27 N -0.080 5.080 28 H 0.078 0.922 29 H 0.091 0.909 30 H 0.093 0.907 31 H 0.103 0.897 32 H 0.112 0.888 33 H 0.189 0.811 34 H 0.164 0.836 35 H 0.126 0.874 36 H 0.129 0.871 37 H 0.077 0.923 38 H 0.095 0.905 39 H 0.090 0.910 40 H 0.106 0.894 41 H 0.101 0.899 42 H 0.049 0.951 43 H 0.088 0.912 44 H 0.170 0.830 45 H 0.062 0.938 46 H 0.104 0.896 47 H 0.225 0.775 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.845 0.537 30.581 30.826 hybrid contribution -0.143 -0.679 0.190 0.719 sum 3.703 -0.141 30.771 30.993 Atomic orbital electron populations 1.22050 0.93715 1.02923 1.03612 1.21689 0.96175 0.77497 1.03739 1.48764 1.35528 1.10215 1.20933 1.22498 0.96010 0.94807 0.96395 1.21301 1.09866 0.96787 1.01746 1.21527 0.97707 0.94210 0.95517 1.20047 1.04595 0.93329 0.91760 1.20424 0.77641 0.84351 0.87595 1.90766 1.46633 1.23580 1.78231 1.47818 1.69568 1.08462 1.09490 1.21860 1.00656 0.83457 1.00800 1.21383 0.97018 1.03411 0.78579 1.22258 0.97352 1.00400 0.88464 1.60031 1.11494 1.52310 1.06146 1.21650 0.92806 1.00155 0.93423 1.19812 0.86663 0.84168 0.86597 1.90521 1.18714 1.56221 1.81216 1.41867 1.09202 1.61479 1.07612 1.19763 0.95860 1.44331 0.82771 0.87850 1.25271 0.94843 0.97434 1.00540 1.69624 1.00475 1.48965 1.35326 0.85792 0.78928 0.77746 0.81824 1.19210 1.20808 1.20763 1.77412 1.23006 0.96232 1.11310 0.92201 0.90915 0.90670 0.89665 0.88753 0.81141 0.83622 0.87374 0.87060 0.92300 0.90515 0.91013 0.89378 0.89865 0.95099 0.91196 0.83019 0.93849 0.89630 0.77458 0.91968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.11 10.10 37.16 0.38 -0.73 16 2 C 0.13 0.91 7.23 -4.04 -0.03 0.88 16 3 N -0.37 -3.84 3.68 -61.37 -0.23 -4.06 16 4 C 0.05 0.40 11.45 -17.22 -0.20 0.21 16 5 C -0.27 -2.44 10.72 -40.02 -0.43 -2.87 16 6 C 0.08 0.88 6.01 -82.41 -0.50 0.39 16 7 C -0.06 -0.48 4.83 -29.03 -0.14 -0.62 16 8 C 0.51 6.30 7.66 -10.99 -0.08 6.21 16 9 O -0.52 -8.87 15.14 5.55 0.08 -8.79 16 10 N -0.62 -6.37 2.87 -181.57 -0.52 -6.89 16 11 C 0.08 0.45 10.24 59.85 0.61 1.06 16 12 C 0.12 1.47 5.67 -4.05 -0.02 1.44 16 13 C 0.05 0.65 6.01 -3.82 -0.02 0.63 16 14 N -0.67 -11.72 6.13 -115.06 -0.70 -12.42 16 15 C 0.05 1.00 6.17 -4.98 -0.03 0.97 16 16 C 0.44 10.95 7.82 -10.99 -0.09 10.86 16 17 O -0.58 -16.44 15.78 5.54 0.09 -16.35 16 18 N -0.56 -14.87 5.29 -10.96 -0.06 -14.93 16 19 C -0.30 -8.55 9.68 -14.94 -0.14 -8.69 16 20 H 0.10 3.11 7.16 -52.48 -0.38 2.74 16 21 C 0.02 0.56 5.50 -17.47 -0.10 0.47 16 22 N -0.90 -25.14 13.05 55.50 0.72 -24.42 16 23 Si 0.93 21.53 29.55 -169.99 -5.02 16.51 16 24 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 25 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 26 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 27 N -0.26 -3.47 11.77 33.67 0.40 -3.07 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.09 0.35 8.07 -51.93 -0.42 -0.07 16 33 H 0.17 0.73 8.06 -52.49 -0.42 0.31 16 34 H 0.15 0.94 8.06 -52.48 -0.42 0.51 16 35 H 0.11 0.72 7.40 -51.93 -0.38 0.34 16 36 H 0.11 0.60 8.09 -51.93 -0.42 0.18 16 37 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 38 H 0.08 0.44 8.07 -51.93 -0.42 0.02 16 39 H 0.07 0.29 6.44 -51.93 -0.33 -0.05 16 40 H 0.09 0.98 8.07 -51.93 -0.42 0.57 16 41 H 0.08 1.18 7.42 -51.93 -0.39 0.80 16 42 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.35 6.49 8.43 -39.29 -0.33 6.16 16 45 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 47 H 0.39 9.87 7.90 -40.82 -0.32 9.55 16 48 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 408.42 15.07 6.15 6.15 Total: -1.00 -38.45 408.42 -7.47 -45.92 By element: Atomic # 1 Polarization: 19.75 SS G_CDS: -7.60 Total: 12.15 kcal Atomic # 6 Polarization: 10.99 SS G_CDS: -0.79 Total: 10.19 kcal Atomic # 7 Polarization: -65.40 SS G_CDS: -0.39 Total: -65.79 kcal Atomic # 8 Polarization: -25.31 SS G_CDS: 0.17 Total: -25.14 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -38.45 -7.47 -45.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567498377.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.071 kcal (2) G-P(sol) polarization free energy of solvation -38.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds