Wall clock time and date at job start Tue Mar 31 2020 20:23:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.47046 * 2 1 4 4 C 1.34953 * 126.03718 * 125.00175 * 3 2 1 5 5 C 1.35312 * 107.74266 * 180.24977 * 4 3 2 6 6 C 1.39863 * 107.92527 * 359.64076 * 5 4 3 7 7 C 1.50703 * 125.90145 * 180.14385 * 6 5 4 8 8 C 1.50700 * 109.47162 * 125.23311 * 7 6 5 9 9 O 1.21284 * 119.99863 * 359.97438 * 8 7 6 10 10 N 1.34774 * 120.00333 * 179.97438 * 8 7 6 11 11 C 1.46503 * 119.99657 * 0.02562 * 10 8 7 12 12 C 1.46492 * 120.00344 * 179.97438 * 10 8 7 13 13 C 1.53000 * 109.47210 * 89.99965 * 12 10 8 14 14 N 1.46903 * 109.47578 * 179.97438 * 13 12 10 15 15 C 1.46896 * 110.99978 * 180.02562 * 14 13 12 16 16 C 1.50700 * 109.46769 * 180.02562 * 15 14 13 17 17 O 1.21298 * 120.00203 * 0.02562 * 16 15 14 18 18 N 1.34776 * 120.00120 * 180.02562 * 16 15 14 19 19 C 1.37091 * 120.00349 * 180.02562 * 18 16 15 20 20 H 1.08004 * 120.00247 * 359.97438 * 19 18 16 21 21 C 1.38952 * 120.00101 * 179.97438 * 19 18 16 22 22 N 1.31406 * 120.00054 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 119.99991 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47026 * 0.02562 * 23 21 19 25 25 H 1.48496 * 109.46928 * 119.99884 * 23 21 19 26 26 H 1.48500 * 109.47276 * 240.00285 * 23 21 19 27 27 N 1.30837 * 108.19940 * 0.36269 * 6 5 4 28 28 H 1.08995 * 109.47070 * 300.00086 * 1 2 3 29 29 H 1.08998 * 109.47149 * 59.99882 * 1 2 3 30 30 H 1.09000 * 109.46813 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47688 * 240.00288 * 2 1 3 32 32 H 1.08997 * 109.47597 * 120.00405 * 2 1 3 33 33 H 1.08002 * 126.12372 * 359.97438 * 4 3 2 34 34 H 1.08008 * 126.03698 * 179.76435 * 5 4 3 35 35 H 1.09000 * 109.46707 * 245.23156 * 7 6 5 36 36 H 1.09002 * 109.47068 * 5.23288 * 7 6 5 37 37 H 1.08999 * 109.47452 * 89.99490 * 11 10 8 38 38 H 1.08995 * 109.47133 * 210.00079 * 11 10 8 39 39 H 1.09001 * 109.47141 * 329.99421 * 11 10 8 40 40 H 1.09006 * 109.47363 * 210.00056 * 12 10 8 41 41 H 1.09000 * 109.47292 * 330.00385 * 12 10 8 42 42 H 1.08993 * 109.47254 * 300.00491 * 13 12 10 43 43 H 1.09006 * 109.46913 * 60.00393 * 13 12 10 44 44 H 1.00901 * 110.99056 * 56.04589 * 14 13 12 45 45 H 1.08995 * 109.47531 * 300.00059 * 15 14 13 46 46 H 1.08996 * 109.46749 * 60.00886 * 15 14 13 47 47 H 0.97002 * 119.99963 * 359.97438 * 18 16 15 48 48 H 0.97002 * 119.99734 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8731 1.9211 0.8939 5 6 3.0673 3.2151 0.5492 6 6 2.3116 3.4728 -0.5992 7 6 2.2340 4.7889 -1.3291 8 6 2.5916 4.5815 -2.7783 9 8 2.8813 3.4740 -3.1789 10 7 2.5893 5.6266 -3.6293 11 6 2.2398 6.9644 -3.1453 12 6 2.9374 5.4250 -5.0379 13 6 1.6718 5.1022 -5.8349 14 7 2.0207 4.9006 -7.2476 15 6 0.8273 4.5887 -8.0452 16 6 1.2239 4.3884 -9.4852 17 8 2.3865 4.4946 -9.8146 18 7 0.2868 4.0913 -10.4072 19 6 0.6476 3.9086 -11.7171 20 1 1.6828 4.0031 -12.0104 21 6 -0.3184 3.6017 -12.6676 22 7 -1.5778 3.4861 -12.3108 23 14 0.1732 3.3535 -14.4526 24 1 1.6402 3.5367 -14.5921 25 1 -0.1967 1.9808 -14.8815 26 1 -0.5330 4.3451 -15.3030 27 7 1.6801 2.3750 -0.9275 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 3.3185 1.4127 1.7363 34 1 3.6964 3.9234 1.0680 35 1 1.2209 5.1846 -1.2579 36 1 2.9324 5.4952 -0.8801 37 1 3.1412 7.4756 -2.8075 38 1 1.7799 7.5342 -3.9527 39 1 1.5381 6.8788 -2.3156 40 1 3.3939 6.3326 -5.4329 41 1 3.6415 4.5973 -5.1234 42 1 1.2153 4.1947 -5.4399 43 1 0.9677 5.9299 -5.7495 44 1 2.7213 4.1815 -7.3478 45 1 0.3648 3.6775 -7.6661 46 1 0.1176 5.4129 -7.9748 47 1 -0.6428 4.0060 -10.1439 48 1 -2.2522 3.2723 -12.9744 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567498377.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:24 Heat of formation + Delta-G solvation = -16.695340 kcal Electronic energy + Delta-G solvation = -27992.495605 eV Core-core repulsion = 23890.299179 eV Total energy + Delta-G solvation = -4102.196426 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.14484 -40.79033 -40.17486 -37.51673 -36.23164 -35.72222 -35.59041 -33.31794 -32.77622 -31.14150 -30.53695 -29.02456 -28.02492 -27.07133 -25.64697 -24.22679 -23.23109 -22.00363 -21.31701 -20.95095 -19.97414 -19.73260 -18.15812 -17.96869 -17.87112 -17.10779 -17.06611 -16.65518 -16.45752 -16.18199 -15.92188 -15.42706 -15.25939 -15.11192 -14.93509 -14.58908 -14.39697 -14.09047 -14.06820 -13.80307 -13.57930 -13.50920 -13.36501 -13.29928 -13.10629 -12.98921 -12.93488 -12.83948 -12.64866 -12.42922 -12.24828 -12.12270 -12.09113 -11.54248 -11.40717 -10.87648 -10.42651 -10.16929 -10.05029 -9.67880 -9.47646 -9.42838 -8.49177 -5.98425 1.04372 1.35292 1.40438 1.55326 1.65149 1.66078 1.76221 2.00174 2.14291 2.28899 2.95195 3.17334 3.46060 3.51018 3.74610 3.86379 3.98829 4.05015 4.09629 4.14526 4.26222 4.31344 4.32983 4.36547 4.43214 4.47339 4.52854 4.54775 4.66868 4.77597 4.78000 4.81081 4.88897 4.94528 4.96792 5.04706 5.13983 5.22008 5.38677 5.49239 5.75222 5.80794 6.02804 6.23183 6.24875 6.42204 6.56338 6.86964 7.09166 7.22245 7.51613 8.06679 8.68551 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.014608 B = 0.001822 C = 0.001674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1916.302582 B =15364.782895 C =16720.164977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.122 3.878 3 N -0.383 5.383 4 C 0.051 3.949 5 C -0.282 4.282 6 C 0.059 3.941 7 C -0.049 4.049 8 C 0.506 3.494 9 O -0.578 6.578 10 N -0.614 5.614 11 C 0.067 3.933 12 C 0.125 3.875 13 C 0.056 3.944 14 N -0.674 5.674 15 C 0.066 3.934 16 C 0.438 3.562 17 O -0.622 6.622 18 N -0.572 5.572 19 C -0.335 4.335 20 H 0.080 0.920 21 C -0.015 4.015 22 N -0.920 5.920 23 Si 0.996 3.004 24 H -0.273 1.273 25 H -0.271 1.271 26 H -0.268 1.268 27 N -0.318 5.318 28 H 0.060 0.940 29 H 0.039 0.961 30 H 0.096 0.904 31 H 0.073 0.927 32 H 0.134 0.866 33 H 0.212 0.788 34 H 0.172 0.828 35 H 0.129 0.871 36 H 0.149 0.851 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.096 0.904 40 H 0.104 0.896 41 H 0.056 0.944 42 H 0.012 0.988 43 H 0.090 0.910 44 H 0.342 0.658 45 H 0.057 0.943 46 H 0.110 0.890 47 H 0.396 0.604 48 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.676 2.235 34.062 34.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.002 3.998 3 N -0.166 5.166 4 C -0.095 4.095 5 C -0.311 4.311 6 C -0.108 4.108 7 C -0.090 4.090 8 C 0.295 3.705 9 O -0.457 6.457 10 N -0.347 5.347 11 C -0.074 4.074 12 C 0.001 3.999 13 C -0.074 4.074 14 N -0.306 5.306 15 C -0.067 4.067 16 C 0.225 3.775 17 O -0.508 6.508 18 N -0.209 5.209 19 C -0.464 4.464 20 H 0.098 0.902 21 C -0.214 4.214 22 N -0.561 5.561 23 Si 0.820 3.180 24 H -0.198 1.198 25 H -0.196 1.196 26 H -0.193 1.193 27 N -0.141 5.141 28 H 0.080 0.920 29 H 0.058 0.942 30 H 0.115 0.885 31 H 0.091 0.909 32 H 0.152 0.848 33 H 0.228 0.772 34 H 0.189 0.811 35 H 0.147 0.853 36 H 0.166 0.834 37 H 0.098 0.902 38 H 0.100 0.900 39 H 0.115 0.885 40 H 0.122 0.878 41 H 0.075 0.925 42 H 0.031 0.969 43 H 0.108 0.892 44 H 0.160 0.840 45 H 0.075 0.925 46 H 0.128 0.872 47 H 0.230 0.770 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.542 1.652 32.573 32.806 hybrid contribution -0.058 -1.007 -0.356 1.070 sum 3.483 0.645 32.216 32.410 Atomic orbital electron populations 1.21981 0.93815 1.03793 1.01973 1.21961 0.96204 0.76598 1.05047 1.49048 1.35993 1.10693 1.20842 1.23229 0.94752 0.94901 0.96570 1.21718 1.10107 0.97826 1.01426 1.22082 0.97688 0.94618 0.96367 1.20191 1.06658 0.93201 0.88916 1.21142 0.76530 0.83702 0.89150 1.90740 1.49497 1.26039 1.79444 1.47919 1.68585 1.09947 1.08245 1.22200 1.02377 0.81035 1.01820 1.21192 0.95624 1.03053 0.80027 1.22260 0.98541 1.00163 0.86427 1.60075 1.10744 1.51802 1.07995 1.21527 0.93706 1.01755 0.89666 1.20776 0.85832 0.82337 0.88540 1.90488 1.20367 1.57556 1.82431 1.41928 1.09663 1.61908 1.07400 1.19730 0.95309 1.46939 0.84463 0.90243 1.26103 0.94668 0.96258 1.04405 1.69683 1.01113 1.48415 1.36901 0.84825 0.78268 0.78321 0.76620 1.19771 1.19593 1.19350 1.77325 1.25349 0.97837 1.13605 0.92041 0.94195 0.88508 0.90905 0.84818 0.77157 0.81073 0.85334 0.83353 0.90226 0.89967 0.88540 0.87825 0.92524 0.96923 0.89215 0.84042 0.92520 0.87201 0.76965 0.91224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.14 10.10 71.98 0.73 -1.41 16 2 C 0.12 1.65 7.23 86.38 0.62 2.28 16 3 N -0.38 -7.81 3.68 -348.06 -1.28 -9.10 16 4 C 0.05 0.76 11.45 83.54 0.96 1.72 16 5 C -0.28 -4.68 10.72 21.99 0.24 -4.44 16 6 C 0.06 1.32 6.01 43.10 0.26 1.57 16 7 C -0.05 -0.76 4.83 29.10 0.14 -0.62 16 8 C 0.51 12.31 7.66 87.66 0.67 12.98 16 9 O -0.58 -20.84 15.14 -3.04 -0.05 -20.89 16 10 N -0.61 -11.90 2.87 -846.77 -2.43 -14.33 16 11 C 0.07 0.59 10.24 127.77 1.31 1.90 16 12 C 0.12 3.06 5.67 86.38 0.49 3.55 16 13 C 0.06 1.57 6.01 86.30 0.52 2.09 16 14 N -0.67 -23.78 6.13 -517.95 -3.17 -26.95 16 15 C 0.07 2.50 6.17 85.56 0.53 3.03 16 16 C 0.44 22.11 7.82 87.66 0.69 22.79 16 17 O -0.62 -36.20 15.78 -3.09 -0.05 -36.24 16 18 N -0.57 -30.73 5.29 -306.98 -1.62 -32.35 16 19 C -0.33 -19.68 9.68 84.04 0.81 -18.87 16 20 H 0.08 4.97 7.16 -2.91 -0.02 4.95 16 21 C -0.01 -0.81 5.50 84.93 0.47 -0.34 16 22 N -0.92 -50.90 13.05 21.66 0.28 -50.62 16 23 Si 1.00 44.00 29.55 68.60 2.03 46.03 16 24 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 25 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 26 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 27 N -0.32 -8.85 11.77 -47.39 -0.56 -9.41 16 28 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.13 0.68 8.07 -2.39 -0.02 0.66 16 33 H 0.21 1.11 8.06 -2.91 -0.02 1.08 16 34 H 0.17 1.72 8.06 -2.91 -0.02 1.70 16 35 H 0.13 1.43 7.40 -2.39 -0.02 1.42 16 36 H 0.15 1.11 8.09 -2.39 -0.02 1.09 16 37 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 38 H 0.08 0.68 8.07 -2.39 -0.02 0.66 16 39 H 0.10 0.40 6.44 -2.39 -0.02 0.39 16 40 H 0.10 2.20 8.07 -2.38 -0.02 2.18 16 41 H 0.06 1.70 7.42 -2.39 -0.02 1.68 16 42 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 43 H 0.09 2.15 8.14 -2.38 -0.02 2.13 16 44 H 0.34 13.11 8.43 -89.69 -0.76 12.35 16 45 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 46 H 0.11 3.65 8.14 -2.39 -0.02 3.63 16 47 H 0.40 20.22 7.90 -92.71 -0.73 19.49 16 48 H 0.28 14.31 8.31 -92.71 -0.77 13.54 16 Total: -1.00 -88.25 408.42 1.07 -87.19 By element: Atomic # 1 Polarization: 40.96 SS G_CDS: -0.51 Total: 40.45 kcal Atomic # 6 Polarization: 17.79 SS G_CDS: 8.43 Total: 26.22 kcal Atomic # 7 Polarization: -133.97 SS G_CDS: -8.78 Total: -142.75 kcal Atomic # 8 Polarization: -57.03 SS G_CDS: -0.09 Total: -57.13 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -88.25 1.07 -87.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567498377.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.491 kcal (2) G-P(sol) polarization free energy of solvation -88.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds