Wall clock time and date at job start Tue Mar 31 2020 20:04:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.46919 * 2 1 4 4 C 1.52997 * 109.46871 * 239.99674 * 2 1 3 5 5 N 1.46902 * 109.47396 * 65.00608 * 4 2 1 6 6 C 1.46892 * 111.00156 * 180.02562 * 5 4 2 7 7 C 1.50700 * 109.47037 * 179.97438 * 6 5 4 8 8 O 1.21286 * 119.99981 * 359.97438 * 7 6 5 9 9 N 1.34783 * 120.00043 * 180.02562 * 7 6 5 10 10 C 1.37095 * 120.00101 * 179.97438 * 9 7 6 11 11 H 1.07999 * 119.99695 * 359.97438 * 10 9 7 12 12 C 1.38947 * 119.99930 * 179.97438 * 10 9 7 13 13 N 1.31409 * 120.00278 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 119.99900 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.46945 * 359.97438 * 14 12 10 16 16 H 1.48505 * 109.47042 * 120.00034 * 14 12 10 17 17 H 1.48498 * 109.46989 * 240.00029 * 14 12 10 18 18 C 1.53000 * 109.46867 * 120.00088 * 2 1 3 19 19 N 1.46512 * 109.46797 * 294.99762 * 18 2 1 20 20 C 1.34770 * 119.99646 * 180.02562 * 19 18 2 21 21 O 1.21281 * 120.00244 * 0.02562 * 20 19 18 22 22 C 1.50698 * 120.00019 * 179.97438 * 20 19 18 23 23 H 1.09001 * 109.47122 * 60.00417 * 22 20 19 24 24 C 1.53006 * 109.47184 * 300.00531 * 22 20 19 25 25 N 1.46500 * 109.47583 * 180.02562 * 22 20 19 26 26 C 1.34949 * 126.03339 * 84.99775 * 25 22 20 27 27 C 1.35319 * 107.74151 * 179.97438 * 26 25 22 28 28 C 1.39863 * 107.92335 * 0.02562 * 27 26 25 29 29 N 1.30842 * 108.20032 * 359.73867 * 28 27 26 30 30 H 1.09001 * 109.47099 * 300.00290 * 1 2 3 31 31 H 1.09004 * 109.46908 * 60.00166 * 1 2 3 32 32 H 1.09000 * 109.47443 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.46752 * 185.00396 * 4 2 1 34 34 H 1.09001 * 109.47310 * 305.00111 * 4 2 1 35 35 H 1.00898 * 111.00281 * 56.03672 * 5 4 2 36 36 H 1.09008 * 109.47106 * 299.99230 * 6 5 4 37 37 H 1.08995 * 109.47591 * 59.99296 * 6 5 4 38 38 H 0.97004 * 119.99831 * 359.97438 * 9 7 6 39 39 H 0.96997 * 120.00238 * 180.02562 * 13 12 10 40 40 H 1.09001 * 109.47194 * 175.00033 * 18 2 1 41 41 H 1.08992 * 109.47132 * 54.99381 * 18 2 1 42 42 H 0.96992 * 119.99836 * 0.02562 * 19 18 2 43 43 H 1.09001 * 109.47002 * 299.99404 * 24 22 20 44 44 H 1.08993 * 109.46955 * 59.99842 * 24 22 20 45 45 H 1.09000 * 109.47050 * 179.97438 * 24 22 20 46 46 H 1.07996 * 126.13035 * 0.02562 * 26 25 22 47 47 H 1.08008 * 126.03344 * 180.02562 * 27 26 25 48 48 H 1.07998 * 125.89851 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.6515 0.0373 -2.4457 6 6 2.1248 -0.6273 -3.6671 7 6 1.7078 0.1779 -4.8709 8 8 1.0780 1.2041 -4.7255 9 7 2.0340 -0.2430 -6.1091 10 6 1.6542 0.4892 -7.2041 11 1 1.0934 1.4030 -7.0746 12 6 1.9910 0.0556 -8.4806 13 7 2.6738 -1.0560 -8.6381 14 14 1.4729 1.0529 -9.9727 15 1 0.7192 2.2529 -9.5287 16 1 2.6793 1.4768 -10.7279 17 1 0.6080 0.2214 -10.8478 18 6 2.0400 -0.7213 1.2493 19 7 1.6524 0.0355 2.4424 20 6 1.9963 -0.4130 3.6659 21 8 2.6271 -1.4426 3.7792 22 6 1.5982 0.3656 4.8932 23 1 0.5119 0.4439 4.9373 24 6 2.2083 1.7673 4.8282 25 7 2.0874 -0.3244 6.0894 26 6 3.3191 -0.2039 6.6274 27 6 3.3717 -1.0010 7.7196 28 6 2.1299 -1.6304 7.8534 29 7 1.3575 -1.2215 6.8796 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 3.1263 -0.7996 -1.2055 34 1 1.6053 -1.7199 -1.2951 35 1 1.9882 0.9872 -2.3967 36 1 3.2117 -0.7053 -3.6405 37 1 1.6904 -1.6250 -3.7296 38 1 2.5374 -1.0640 -6.2253 39 1 2.9092 -1.3585 -9.5291 40 1 3.1263 -0.7995 1.2057 41 1 1.6053 -1.7197 1.2952 42 1 1.1483 0.8591 2.3517 43 1 3.2946 1.6890 4.7842 44 1 1.8446 2.2809 3.9382 45 1 1.9199 2.3306 5.7157 46 1 4.1191 0.4179 6.2537 47 1 4.2224 -1.1285 8.3728 48 1 1.8548 -2.3300 8.6288 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568160351.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:04:21 Heat of formation + Delta-G solvation = 4.484395 kcal Electronic energy + Delta-G solvation = -27772.856962 eV Core-core repulsion = 23671.578958 eV Total energy + Delta-G solvation = -4101.278004 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.65324 -40.06129 -38.41927 -37.32088 -35.13102 -34.96351 -33.89185 -32.40066 -31.21884 -30.41148 -29.87805 -27.46603 -27.04921 -25.39400 -24.62824 -23.17338 -21.73738 -21.37621 -20.87227 -20.12090 -19.22614 -18.13215 -17.86251 -17.54605 -16.39425 -16.13415 -15.85911 -15.60739 -15.11112 -15.04724 -14.66568 -14.40609 -14.33359 -14.14953 -13.94928 -13.73240 -13.50636 -13.34336 -13.19563 -13.04842 -12.84876 -12.67787 -12.45757 -12.22035 -11.97332 -11.72106 -11.54470 -11.21443 -11.15126 -11.03813 -10.99987 -10.95803 -10.47984 -10.36249 -10.24635 -9.69480 -9.54288 -9.50189 -8.89770 -8.49753 -8.09807 -7.98313 -6.43909 -3.84884 1.50495 1.95762 2.09951 2.59590 2.76717 3.14624 3.25361 3.32406 3.87900 3.88583 4.03775 4.10049 4.23921 4.25794 4.45185 4.62100 4.62577 4.71698 4.80311 4.86878 4.94720 5.12895 5.19886 5.23297 5.25433 5.29367 5.38270 5.48154 5.49981 5.61723 5.69216 5.71880 5.80499 5.82719 5.91506 5.95249 6.11253 6.23857 6.32884 6.33590 6.59911 6.99008 7.14845 7.39486 7.53222 7.60219 7.70113 8.04163 8.58759 9.15651 9.52024 10.03119 10.73854 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.042235 B = 0.001420 C = 0.001404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.791189 B =19709.679819 C =19931.374191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.099 4.099 3 H 0.077 0.923 4 C 0.066 3.934 5 N -0.665 5.665 6 C 0.051 3.949 7 C 0.441 3.559 8 O -0.584 6.584 9 N -0.564 5.564 10 C -0.300 4.300 11 H 0.104 0.896 12 C 0.022 3.978 13 N -0.901 5.901 14 Si 0.929 3.071 15 H -0.268 1.268 16 H -0.282 1.282 17 H -0.281 1.281 18 C 0.124 3.876 19 N -0.720 5.720 20 C 0.499 3.501 21 O -0.520 6.520 22 C 0.143 3.857 23 H 0.129 0.871 24 C -0.162 4.162 25 N -0.356 5.356 26 C 0.068 3.932 27 C -0.274 4.274 28 C 0.048 3.952 29 N -0.292 5.292 30 H 0.044 0.956 31 H 0.078 0.922 32 H 0.054 0.946 33 H 0.029 0.971 34 H 0.075 0.925 35 H 0.348 0.652 36 H 0.043 0.957 37 H 0.086 0.914 38 H 0.392 0.608 39 H 0.271 0.729 40 H 0.069 0.931 41 H 0.071 0.929 42 H 0.402 0.598 43 H 0.073 0.927 44 H 0.090 0.910 45 H 0.082 0.918 46 H 0.170 0.830 47 H 0.147 0.853 48 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.616 2.553 29.837 29.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.118 4.118 3 H 0.096 0.904 4 C -0.065 4.065 5 N -0.298 5.298 6 C -0.082 4.082 7 C 0.226 3.774 8 O -0.468 6.468 9 N -0.200 5.200 10 C -0.429 4.429 11 H 0.121 0.879 12 C -0.179 4.179 13 N -0.543 5.543 14 Si 0.757 3.243 15 H -0.192 1.192 16 H -0.208 1.208 17 H -0.207 1.207 18 C 0.001 3.999 19 N -0.374 5.374 20 C 0.282 3.718 21 O -0.395 6.395 22 C 0.036 3.964 23 H 0.147 0.853 24 C -0.220 4.220 25 N -0.138 5.138 26 C -0.078 4.078 27 C -0.303 4.303 28 C -0.139 4.139 29 N -0.112 5.112 30 H 0.063 0.937 31 H 0.097 0.903 32 H 0.073 0.927 33 H 0.047 0.953 34 H 0.093 0.907 35 H 0.168 0.832 36 H 0.061 0.939 37 H 0.104 0.896 38 H 0.225 0.775 39 H 0.081 0.919 40 H 0.087 0.913 41 H 0.090 0.910 42 H 0.238 0.762 43 H 0.092 0.908 44 H 0.109 0.891 45 H 0.101 0.899 46 H 0.187 0.813 47 H 0.165 0.835 48 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -0.111 2.097 29.126 29.202 hybrid contribution 1.722 0.376 -0.622 1.870 sum 1.611 2.473 28.504 28.656 Atomic orbital electron populations 1.21772 0.93629 1.02294 1.02135 1.21344 0.97692 0.99937 0.92853 0.90420 1.21893 0.97352 0.98011 0.89198 1.60023 1.64180 1.05810 0.99769 1.21667 0.97761 0.98676 0.90089 1.19801 0.85576 0.87927 0.84084 1.90515 1.44120 1.26452 1.85745 1.41877 1.49454 1.24244 1.04453 1.19755 1.32820 1.06752 0.83605 0.87856 1.25265 0.96900 0.96641 0.99126 1.69617 1.38872 1.21770 1.23997 0.85801 0.78278 0.79576 0.80688 1.19210 1.20769 1.20730 1.21453 1.00147 0.95521 0.82805 1.45941 1.57878 1.28039 1.05496 1.20712 0.80271 0.86097 0.84676 1.90787 1.38782 1.23637 1.86254 1.21081 1.02367 0.91604 0.81298 0.85349 1.22176 1.02513 0.92438 1.04860 1.48163 1.09815 1.35004 1.20865 1.22416 0.89027 1.00949 0.95406 1.21481 1.00264 1.05805 1.02789 1.23886 0.92680 0.99839 0.97478 1.77366 1.20330 1.07805 1.05735 0.93737 0.90281 0.92717 0.95263 0.90696 0.83246 0.93869 0.89575 0.77453 0.91903 0.91289 0.91024 0.76249 0.90771 0.89146 0.89939 0.81315 0.83478 0.79980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 8.95 37.16 0.33 -0.97 16 2 C -0.10 -0.86 2.57 -90.62 -0.23 -1.09 16 3 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 4 C 0.07 0.72 5.07 -3.82 -0.02 0.70 16 5 N -0.67 -9.89 5.58 -115.06 -0.64 -10.53 16 6 C 0.05 0.86 6.17 -4.98 -0.03 0.83 16 7 C 0.44 10.20 7.82 -10.98 -0.09 10.11 16 8 O -0.58 -15.52 15.78 5.55 0.09 -15.43 16 9 N -0.56 -14.14 5.29 -10.96 -0.06 -14.20 16 10 C -0.30 -8.30 9.68 -14.94 -0.14 -8.45 16 11 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 12 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 13 N -0.90 -24.39 13.05 55.50 0.72 -23.66 16 14 Si 0.93 20.87 29.55 -169.99 -5.02 15.85 16 15 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 16 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 17 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 18 C 0.12 1.07 5.07 -4.04 -0.02 1.05 16 19 N -0.72 -5.09 5.18 -60.29 -0.31 -5.40 16 20 C 0.50 4.69 7.22 -10.99 -0.08 4.61 16 21 O -0.52 -7.42 16.42 5.56 0.09 -7.33 16 22 C 0.14 0.98 3.73 -69.08 -0.26 0.73 16 23 H 0.13 0.72 8.14 -51.93 -0.42 0.30 16 24 C -0.16 -0.54 8.73 37.16 0.32 -0.22 16 25 N -0.36 -3.43 3.02 -55.99 -0.17 -3.59 16 26 C 0.07 0.56 10.57 -17.22 -0.18 0.38 16 27 C -0.27 -2.26 10.80 -40.01 -0.43 -2.70 16 28 C 0.05 0.44 12.03 -17.37 -0.21 0.23 16 29 N -0.29 -3.36 12.58 30.62 0.39 -2.97 16 30 H 0.04 0.32 7.18 -51.93 -0.37 -0.06 16 31 H 0.08 0.92 7.75 -51.93 -0.40 0.52 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.03 0.31 8.14 -51.93 -0.42 -0.12 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.35 5.31 8.43 -39.29 -0.33 4.97 16 36 H 0.04 0.67 8.14 -51.92 -0.42 0.24 16 37 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 38 H 0.39 9.42 7.90 -40.82 -0.32 9.10 16 39 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.40 1.74 7.07 -40.82 -0.29 1.45 16 43 H 0.07 0.26 7.15 -51.93 -0.37 -0.11 16 44 H 0.09 0.13 7.56 -51.93 -0.39 -0.26 16 45 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 46 H 0.17 0.91 7.26 -52.49 -0.38 0.53 16 47 H 0.15 0.86 8.06 -52.48 -0.42 0.44 16 48 H 0.18 1.09 8.06 -52.49 -0.42 0.67 16 LS Contribution 404.99 15.07 6.10 6.10 Total: -1.00 -36.45 404.99 -7.39 -43.84 By element: Atomic # 1 Polarization: 19.05 SS G_CDS: -7.45 Total: 11.60 kcal Atomic # 6 Polarization: 6.85 SS G_CDS: -1.13 Total: 5.72 kcal Atomic # 7 Polarization: -60.29 SS G_CDS: -0.07 Total: -60.36 kcal Atomic # 8 Polarization: -22.94 SS G_CDS: 0.18 Total: -22.76 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -36.45 -7.39 -43.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568160351.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.329 kcal (2) G-P(sol) polarization free energy of solvation -36.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds