Wall clock time and date at job start Tue Mar 31 2020 20:04:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.46919 * 2 1 4 4 C 1.52997 * 109.46871 * 239.99674 * 2 1 3 5 5 N 1.46902 * 109.47396 * 65.00608 * 4 2 1 6 6 C 1.46892 * 111.00156 * 180.02562 * 5 4 2 7 7 C 1.50700 * 109.47037 * 179.97438 * 6 5 4 8 8 O 1.21286 * 119.99981 * 359.97438 * 7 6 5 9 9 N 1.34783 * 120.00043 * 180.02562 * 7 6 5 10 10 C 1.37095 * 120.00101 * 179.97438 * 9 7 6 11 11 H 1.07999 * 119.99695 * 359.97438 * 10 9 7 12 12 C 1.38947 * 119.99930 * 179.97438 * 10 9 7 13 13 N 1.31409 * 120.00278 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 119.99900 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.46945 * 359.97438 * 14 12 10 16 16 H 1.48505 * 109.47042 * 120.00034 * 14 12 10 17 17 H 1.48498 * 109.46989 * 240.00029 * 14 12 10 18 18 C 1.53000 * 109.46867 * 120.00088 * 2 1 3 19 19 N 1.46512 * 109.46797 * 294.99762 * 18 2 1 20 20 C 1.34770 * 119.99646 * 180.02562 * 19 18 2 21 21 O 1.21281 * 120.00244 * 0.02562 * 20 19 18 22 22 C 1.50698 * 120.00019 * 179.97438 * 20 19 18 23 23 H 1.09001 * 109.47122 * 60.00417 * 22 20 19 24 24 C 1.53006 * 109.47184 * 300.00531 * 22 20 19 25 25 N 1.46500 * 109.47583 * 180.02562 * 22 20 19 26 26 C 1.34949 * 126.03339 * 84.99775 * 25 22 20 27 27 C 1.35319 * 107.74151 * 179.97438 * 26 25 22 28 28 C 1.39863 * 107.92335 * 0.02562 * 27 26 25 29 29 N 1.30842 * 108.20032 * 359.73867 * 28 27 26 30 30 H 1.09001 * 109.47099 * 300.00290 * 1 2 3 31 31 H 1.09004 * 109.46908 * 60.00166 * 1 2 3 32 32 H 1.09000 * 109.47443 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.46752 * 185.00396 * 4 2 1 34 34 H 1.09001 * 109.47310 * 305.00111 * 4 2 1 35 35 H 1.00898 * 111.00281 * 56.03672 * 5 4 2 36 36 H 1.09008 * 109.47106 * 299.99230 * 6 5 4 37 37 H 1.08995 * 109.47591 * 59.99296 * 6 5 4 38 38 H 0.97004 * 119.99831 * 359.97438 * 9 7 6 39 39 H 0.96997 * 120.00238 * 180.02562 * 13 12 10 40 40 H 1.09001 * 109.47194 * 175.00033 * 18 2 1 41 41 H 1.08992 * 109.47132 * 54.99381 * 18 2 1 42 42 H 0.96992 * 119.99836 * 0.02562 * 19 18 2 43 43 H 1.09001 * 109.47002 * 299.99404 * 24 22 20 44 44 H 1.08993 * 109.46955 * 59.99842 * 24 22 20 45 45 H 1.09000 * 109.47050 * 179.97438 * 24 22 20 46 46 H 1.07996 * 126.13035 * 0.02562 * 26 25 22 47 47 H 1.08008 * 126.03344 * 180.02562 * 27 26 25 48 48 H 1.07998 * 125.89851 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.6515 0.0373 -2.4457 6 6 2.1248 -0.6273 -3.6671 7 6 1.7078 0.1779 -4.8709 8 8 1.0780 1.2041 -4.7255 9 7 2.0340 -0.2430 -6.1091 10 6 1.6542 0.4892 -7.2041 11 1 1.0934 1.4030 -7.0746 12 6 1.9910 0.0556 -8.4806 13 7 2.6738 -1.0560 -8.6381 14 14 1.4729 1.0529 -9.9727 15 1 0.7192 2.2529 -9.5287 16 1 2.6793 1.4768 -10.7279 17 1 0.6080 0.2214 -10.8478 18 6 2.0400 -0.7213 1.2493 19 7 1.6524 0.0355 2.4424 20 6 1.9963 -0.4130 3.6659 21 8 2.6271 -1.4426 3.7792 22 6 1.5982 0.3656 4.8932 23 1 0.5119 0.4439 4.9373 24 6 2.2083 1.7673 4.8282 25 7 2.0874 -0.3244 6.0894 26 6 3.3191 -0.2039 6.6274 27 6 3.3717 -1.0010 7.7196 28 6 2.1299 -1.6304 7.8534 29 7 1.3575 -1.2215 6.8796 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 3.1263 -0.7996 -1.2055 34 1 1.6053 -1.7199 -1.2951 35 1 1.9882 0.9872 -2.3967 36 1 3.2117 -0.7053 -3.6405 37 1 1.6904 -1.6250 -3.7296 38 1 2.5374 -1.0640 -6.2253 39 1 2.9092 -1.3585 -9.5291 40 1 3.1263 -0.7995 1.2057 41 1 1.6053 -1.7197 1.2952 42 1 1.1483 0.8591 2.3517 43 1 3.2946 1.6890 4.7842 44 1 1.8446 2.2809 3.9382 45 1 1.9199 2.3306 5.7157 46 1 4.1191 0.4179 6.2537 47 1 4.2224 -1.1285 8.3728 48 1 1.8548 -2.3300 8.6288 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568160351.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:04:20 Heat of formation + Delta-G solvation = -24.033880 kcal Electronic energy + Delta-G solvation = -27774.093607 eV Core-core repulsion = 23671.578958 eV Total energy + Delta-G solvation = -4102.514649 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.27415 -40.79393 -40.15954 -38.32836 -36.22855 -35.76502 -35.56421 -33.44383 -33.13149 -31.04479 -30.41621 -28.83261 -27.75687 -26.65279 -25.64065 -24.34441 -22.44848 -21.99556 -21.67915 -21.09698 -20.67742 -19.89430 -18.74170 -18.19472 -17.76817 -17.02658 -16.87215 -16.68705 -16.48085 -16.04554 -15.79909 -15.67117 -15.30331 -15.15126 -14.95730 -14.74513 -14.46740 -14.35350 -13.95980 -13.74179 -13.59789 -13.44053 -13.41090 -13.31618 -13.16106 -13.03490 -12.85012 -12.62455 -12.40591 -12.11553 -12.03271 -11.97800 -11.73138 -11.65717 -11.51137 -11.23955 -10.37926 -10.33465 -10.22126 -10.01494 -9.52376 -9.30006 -8.46880 -5.95683 0.87304 1.36801 1.38057 1.42240 1.43995 1.56362 1.97198 2.05414 2.12332 2.29613 2.93777 3.20697 3.40608 3.52496 3.60499 3.79945 3.85260 3.94832 3.98266 4.05431 4.13911 4.32490 4.47374 4.47900 4.55878 4.58133 4.60802 4.62427 4.71495 4.74321 4.82716 4.87895 4.94609 5.06961 5.08358 5.15405 5.20442 5.36497 5.41160 5.53377 5.73441 5.88198 6.04578 6.09665 6.39095 6.44278 6.59872 6.75395 7.05801 7.12604 7.56431 8.11275 8.70729 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.042235 B = 0.001420 C = 0.001404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.791189 B =19709.679819 C =19931.374191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.085 4.085 3 H 0.091 0.909 4 C 0.065 3.935 5 N -0.676 5.676 6 C 0.065 3.935 7 C 0.438 3.562 8 O -0.622 6.622 9 N -0.574 5.574 10 C -0.334 4.334 11 H 0.080 0.920 12 C -0.013 4.013 13 N -0.921 5.921 14 Si 0.993 3.007 15 H -0.272 1.272 16 H -0.271 1.271 17 H -0.272 1.272 18 C 0.132 3.868 19 N -0.704 5.704 20 C 0.500 3.500 21 O -0.575 6.575 22 C 0.141 3.859 23 H 0.140 0.860 24 C -0.155 4.155 25 N -0.365 5.365 26 C 0.060 3.940 27 C -0.286 4.286 28 C 0.038 3.962 29 N -0.338 5.338 30 H 0.067 0.933 31 H 0.054 0.946 32 H 0.046 0.954 33 H 0.041 0.959 34 H 0.075 0.925 35 H 0.346 0.654 36 H 0.066 0.934 37 H 0.101 0.899 38 H 0.396 0.604 39 H 0.277 0.723 40 H 0.065 0.935 41 H 0.058 0.942 42 H 0.418 0.582 43 H 0.074 0.926 44 H 0.114 0.886 45 H 0.091 0.909 46 H 0.195 0.805 47 H 0.168 0.832 48 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.121 3.432 30.511 30.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.104 4.104 3 H 0.109 0.891 4 C -0.064 4.064 5 N -0.308 5.308 6 C -0.068 4.068 7 C 0.226 3.774 8 O -0.508 6.508 9 N -0.212 5.212 10 C -0.463 4.463 11 H 0.098 0.902 12 C -0.213 4.213 13 N -0.562 5.562 14 Si 0.817 3.183 15 H -0.197 1.197 16 H -0.196 1.196 17 H -0.197 1.197 18 C 0.008 3.992 19 N -0.358 5.358 20 C 0.285 3.715 21 O -0.453 6.453 22 C 0.035 3.965 23 H 0.158 0.842 24 C -0.213 4.213 25 N -0.148 5.148 26 C -0.085 4.085 27 C -0.315 4.315 28 C -0.148 4.148 29 N -0.159 5.159 30 H 0.086 0.914 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.060 0.940 34 H 0.093 0.907 35 H 0.165 0.835 36 H 0.084 0.916 37 H 0.119 0.881 38 H 0.230 0.770 39 H 0.087 0.913 40 H 0.083 0.917 41 H 0.076 0.924 42 H 0.257 0.743 43 H 0.093 0.907 44 H 0.132 0.868 45 H 0.110 0.890 46 H 0.212 0.788 47 H 0.186 0.814 48 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 0.383 2.987 29.806 29.958 hybrid contribution 1.562 0.091 -0.779 1.747 sum 1.944 3.078 29.027 29.255 Atomic orbital electron populations 1.21728 0.93923 1.01800 1.02093 1.21198 0.97201 1.00306 0.91722 0.89088 1.21968 0.98209 0.97766 0.88445 1.60010 1.64692 1.05969 1.00169 1.21518 0.99079 0.98002 0.88182 1.20877 0.83865 0.87616 0.85055 1.90483 1.45483 1.28329 1.86501 1.41956 1.50055 1.24366 1.04801 1.19718 1.34316 1.06997 0.85298 0.90220 1.26038 0.96445 0.97556 1.01228 1.69677 1.39013 1.22537 1.24980 0.84869 0.78218 0.78002 0.77235 1.19678 1.19606 1.19738 1.21263 0.99778 0.95032 0.83129 1.45792 1.57167 1.28236 1.04559 1.21190 0.79213 0.85431 0.85706 1.90762 1.41454 1.26061 1.87042 1.21349 1.03289 0.92530 0.79314 0.84242 1.22224 1.02403 0.90176 1.06476 1.48412 1.10161 1.34900 1.21289 1.22956 0.89248 1.01003 0.95303 1.21856 1.00631 1.05679 1.03302 1.24389 0.92989 0.99909 0.97476 1.77277 1.22064 1.09447 1.07131 0.91389 0.92681 0.93462 0.94045 0.90701 0.83536 0.91637 0.88112 0.77026 0.91335 0.91665 0.92400 0.74334 0.90703 0.86760 0.89021 0.78798 0.81448 0.77882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 8.95 71.98 0.64 -1.69 16 2 C -0.09 -1.31 2.57 -10.79 -0.03 -1.34 16 3 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 4 C 0.07 1.33 5.07 86.30 0.44 1.76 16 5 N -0.68 -19.26 5.58 -517.94 -2.89 -22.15 16 6 C 0.06 2.12 6.17 85.56 0.53 2.65 16 7 C 0.44 20.39 7.82 87.66 0.69 21.08 16 8 O -0.62 -33.58 15.78 -3.05 -0.05 -33.63 16 9 N -0.57 -29.18 5.29 -306.99 -1.62 -30.80 16 10 C -0.33 -18.82 9.68 84.04 0.81 -18.01 16 11 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 12 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16 13 N -0.92 -49.49 13.05 21.66 0.28 -49.21 16 14 Si 0.99 42.58 29.55 68.60 2.03 44.61 16 15 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 16 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 17 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 18 C 0.13 2.06 5.07 86.38 0.44 2.50 16 19 N -0.70 -8.58 5.18 -463.05 -2.40 -10.98 16 20 C 0.50 8.83 7.22 87.66 0.63 9.46 16 21 O -0.57 -16.38 16.42 -3.03 -0.05 -16.43 16 22 C 0.14 1.73 3.73 44.25 0.17 1.90 16 23 H 0.14 1.35 8.14 -2.39 -0.02 1.33 16 24 C -0.15 -0.63 8.73 71.98 0.63 0.00 16 25 N -0.37 -6.75 3.02 -331.05 -1.00 -7.75 16 26 C 0.06 0.94 10.57 83.54 0.88 1.82 16 27 C -0.29 -4.46 10.80 21.99 0.24 -4.22 16 28 C 0.04 0.69 12.03 85.23 1.02 1.72 16 29 N -0.34 -7.78 12.58 -57.03 -0.72 -8.49 16 30 H 0.07 0.81 7.18 -2.39 -0.02 0.79 16 31 H 0.05 1.23 7.75 -2.38 -0.02 1.21 16 32 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.35 10.16 8.43 -89.70 -0.76 9.41 16 36 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 37 H 0.10 3.05 8.14 -2.39 -0.02 3.03 16 38 H 0.40 19.14 7.90 -92.71 -0.73 18.41 16 39 H 0.28 13.92 8.31 -92.71 -0.77 13.15 16 40 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.42 2.38 7.07 -92.71 -0.66 1.72 16 43 H 0.07 0.33 7.15 -2.39 -0.02 0.31 16 44 H 0.11 -0.09 7.56 -2.39 -0.02 -0.11 16 45 H 0.09 0.26 8.14 -2.39 -0.02 0.24 16 46 H 0.20 1.74 7.26 -2.91 -0.02 1.72 16 47 H 0.17 1.72 8.06 -2.91 -0.02 1.69 16 48 H 0.20 2.35 8.06 -2.91 -0.02 2.33 16 Total: -1.00 -81.03 404.99 0.00 -81.03 By element: Atomic # 1 Polarization: 37.55 SS G_CDS: -1.15 Total: 36.41 kcal Atomic # 6 Polarization: 9.84 SS G_CDS: 7.56 Total: 17.40 kcal Atomic # 7 Polarization: -121.04 SS G_CDS: -8.34 Total: -129.39 kcal Atomic # 8 Polarization: -49.96 SS G_CDS: -0.10 Total: -50.06 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.61 kcal Total: -81.03 0.00 -81.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568160351.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.998 kcal (2) G-P(sol) polarization free energy of solvation -81.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds