Wall clock time and date at job start Tue Mar 31 2020 20:04:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47025 * 2 1 4 4 C 1.50704 * 109.46942 * 240.00500 * 2 1 3 5 5 O 1.21277 * 119.99832 * 239.99867 * 4 2 1 6 6 N 1.34781 * 119.99940 * 59.99782 * 4 2 1 7 7 C 1.46497 * 120.00055 * 179.97438 * 6 4 2 8 8 C 1.52993 * 109.47162 * 180.02562 * 7 6 4 9 9 H 1.09002 * 109.47076 * 304.99867 * 8 7 6 10 10 C 1.53004 * 109.47412 * 64.99947 * 8 7 6 11 11 C 1.53006 * 109.47268 * 185.00067 * 8 7 6 12 12 N 1.46898 * 109.47138 * 174.99901 * 11 8 7 13 13 C 1.46906 * 110.99888 * 180.02562 * 12 11 8 14 14 C 1.50699 * 109.47140 * 179.97438 * 13 12 11 15 15 O 1.21289 * 119.99678 * 0.02562 * 14 13 12 16 16 N 1.34777 * 119.99614 * 180.02562 * 14 13 12 17 17 C 1.37097 * 119.99518 * 180.02562 * 16 14 13 18 18 H 1.07996 * 120.00466 * 359.97438 * 17 16 14 19 19 C 1.38949 * 120.00085 * 179.97438 * 17 16 14 20 20 N 1.31408 * 120.00498 * 179.97438 * 19 17 16 21 21 Si 1.86805 * 119.99920 * 359.97438 * 19 17 16 22 22 H 1.48499 * 109.47441 * 89.99762 * 21 19 17 23 23 H 1.48495 * 109.46914 * 210.00201 * 21 19 17 24 24 H 1.48508 * 109.46806 * 329.99819 * 21 19 17 25 25 N 1.46501 * 109.47429 * 120.00492 * 2 1 3 26 26 C 1.34940 * 126.03524 * 34.71276 * 25 2 1 27 27 C 1.35319 * 107.74203 * 179.83725 * 26 25 2 28 28 C 1.39868 * 107.92047 * 0.42848 * 27 26 25 29 29 N 1.30840 * 108.20373 * 359.73179 * 28 27 26 30 30 H 1.09005 * 109.47025 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.46589 * 299.99307 * 1 2 3 32 32 H 1.08997 * 109.47617 * 59.99344 * 1 2 3 33 33 H 0.96998 * 120.00074 * 0.02562 * 6 4 2 34 34 H 1.09005 * 109.46785 * 59.99797 * 7 6 4 35 35 H 1.09001 * 109.46833 * 299.99849 * 7 6 4 36 36 H 1.09000 * 109.46646 * 300.00184 * 10 8 7 37 37 H 1.08997 * 109.46495 * 60.00353 * 10 8 7 38 38 H 1.09001 * 109.47106 * 179.97438 * 10 8 7 39 39 H 1.08997 * 109.46770 * 54.99847 * 11 8 7 40 40 H 1.08995 * 109.47019 * 295.00060 * 11 8 7 41 41 H 1.00901 * 111.00121 * 56.04666 * 12 11 8 42 42 H 1.09004 * 109.47040 * 299.99934 * 13 12 11 43 43 H 1.09000 * 109.47033 * 59.99886 * 13 12 11 44 44 H 0.96996 * 120.00269 * 359.97438 * 16 14 13 45 45 H 0.97002 * 120.00283 * 180.02562 * 20 19 17 46 46 H 1.08002 * 126.12953 * 0.02562 * 26 25 2 47 47 H 1.08004 * 126.03719 * 180.15793 * 27 26 25 48 48 H 1.08002 * 125.89427 * 179.71761 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 8 2.7295 -1.6964 -1.1194 6 7 1.7066 -0.2497 -2.4547 7 6 2.1953 -0.9399 -3.6509 8 6 1.6857 -0.2183 -4.9000 9 1 0.5994 -0.1402 -4.8566 10 6 2.2957 1.1835 -4.9638 11 6 2.0909 -1.0080 -6.1463 12 7 1.5007 -0.3812 -7.3365 13 6 1.8688 -1.1146 -8.5550 14 6 1.2461 -0.4441 -9.7524 15 8 0.5633 0.5475 -9.6052 16 7 1.4479 -0.9463 -10.9866 17 6 0.8819 -0.3360 -12.0760 18 1 0.2739 0.5470 -11.9450 19 6 1.0903 -0.8534 -13.3486 20 7 0.5474 -0.2687 -14.3927 21 14 2.1425 -2.3802 -13.5753 22 1 1.2842 -3.5893 -13.4945 23 1 2.8056 -2.3316 -14.9031 24 1 3.1741 -2.4332 -12.5084 25 7 2.0184 -0.6907 1.1961 26 6 1.4374 -1.7526 1.7924 27 6 2.1968 -2.0930 2.8594 28 6 3.2736 -1.2026 2.9228 29 7 3.1678 -0.3615 1.9261 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 1.1492 0.5391 -2.5436 34 1 1.8324 -1.9678 -3.6511 35 1 3.2853 -0.9394 -3.6508 36 1 2.0070 1.7460 -4.0760 37 1 3.3820 1.1052 -5.0072 38 1 1.9329 1.6974 -5.8540 39 1 1.7313 -2.0333 -6.0595 40 1 3.1770 -1.0105 -6.2376 41 1 1.7676 0.5896 -7.4039 42 1 2.9534 -1.1182 -8.6633 43 1 1.5073 -2.1405 -8.4847 44 1 1.9943 -1.7391 -11.1043 45 1 0.6926 -0.6301 -15.2811 46 1 0.5305 -2.2448 1.4733 47 1 2.0031 -2.9056 3.5440 48 1 4.0570 -1.2082 3.6662 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568160352.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:04:23 Heat of formation + Delta-G solvation = 12.004228 kcal Electronic energy + Delta-G solvation = -27833.745550 eV Core-core repulsion = 23732.793631 eV Total energy + Delta-G solvation = -4100.951919 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.67207 -40.09534 -38.61664 -37.45982 -35.16972 -35.02158 -33.95185 -32.45434 -31.66383 -30.43066 -29.90031 -27.63064 -27.22850 -25.49231 -24.58943 -23.13794 -21.76666 -21.39299 -20.80896 -20.09732 -19.39888 -18.43576 -18.06315 -17.57354 -16.62199 -16.12741 -15.88063 -15.72988 -15.21218 -15.03544 -14.88762 -14.49891 -14.38684 -14.18643 -13.96243 -13.61154 -13.46903 -13.25552 -13.14837 -13.12180 -12.94439 -12.81939 -12.77202 -12.36304 -12.21944 -12.04111 -11.79121 -11.34957 -11.21984 -11.10694 -11.03839 -11.01716 -10.61701 -10.51086 -10.00108 -9.71510 -9.60011 -9.53742 -8.91481 -8.63454 -8.23543 -8.18668 -6.33657 -3.85261 1.48687 1.93660 2.07284 2.57887 2.73780 3.00550 3.05191 3.13434 3.70760 3.86272 4.00465 4.07654 4.08713 4.22033 4.43602 4.56479 4.59791 4.60913 4.70838 4.80012 4.86392 4.92806 5.18677 5.18883 5.22586 5.27927 5.28146 5.40041 5.46196 5.46696 5.58587 5.60193 5.70303 5.71318 5.77165 5.85606 5.91369 5.98992 6.06899 6.31453 6.58106 6.95888 7.02105 7.37616 7.51055 7.55590 7.67147 8.11611 8.56959 8.92169 9.39709 9.79553 10.79375 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.035307 B = 0.001487 C = 0.001459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.853354 B =18828.860098 C =19182.693755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.143 3.857 3 H 0.129 0.871 4 C 0.500 3.500 5 O -0.520 6.520 6 N -0.721 5.721 7 C 0.126 3.874 8 C -0.101 4.101 9 H 0.091 0.909 10 C -0.154 4.154 11 C 0.066 3.934 12 N -0.668 5.668 13 C 0.047 3.953 14 C 0.449 3.551 15 O -0.566 6.566 16 N -0.590 5.590 17 C -0.306 4.306 18 H 0.120 0.880 19 C 0.042 3.958 20 N -0.881 5.881 21 Si 0.880 3.120 22 H -0.270 1.270 23 H -0.276 1.276 24 H -0.270 1.270 25 N -0.356 5.356 26 C 0.068 3.932 27 C -0.274 4.274 28 C 0.048 3.952 29 N -0.292 5.292 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.402 0.598 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.054 0.946 37 H 0.055 0.945 38 H 0.069 0.931 39 H 0.074 0.926 40 H 0.031 0.969 41 H 0.351 0.649 42 H 0.045 0.955 43 H 0.088 0.912 44 H 0.371 0.629 45 H 0.274 0.726 46 H 0.170 0.830 47 H 0.148 0.852 48 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.662 -2.427 32.263 32.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.037 3.963 3 H 0.146 0.854 4 C 0.283 3.717 5 O -0.394 6.394 6 N -0.374 5.374 7 C 0.002 3.998 8 C -0.120 4.120 9 H 0.109 0.891 10 C -0.211 4.211 11 C -0.064 4.064 12 N -0.302 5.302 13 C -0.085 4.085 14 C 0.235 3.765 15 O -0.448 6.448 16 N -0.229 5.229 17 C -0.435 4.435 18 H 0.137 0.863 19 C -0.161 4.161 20 N -0.521 5.521 21 Si 0.706 3.294 22 H -0.196 1.196 23 H -0.202 1.202 24 H -0.195 1.195 25 N -0.139 5.139 26 C -0.078 4.078 27 C -0.303 4.303 28 C -0.139 4.139 29 N -0.113 5.113 30 H 0.093 0.907 31 H 0.101 0.899 32 H 0.109 0.891 33 H 0.238 0.762 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.088 0.912 39 H 0.093 0.907 40 H 0.049 0.951 41 H 0.171 0.829 42 H 0.063 0.937 43 H 0.106 0.894 44 H 0.203 0.797 45 H 0.084 0.916 46 H 0.187 0.813 47 H 0.165 0.835 48 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 2.547 -1.712 31.537 31.686 hybrid contribution 1.193 -1.421 -0.253 1.873 sum 3.740 -3.133 31.284 31.662 Atomic orbital electron populations 1.22180 0.90350 1.04527 1.04960 1.21081 0.96218 0.97738 0.81302 0.85382 1.20721 0.81044 0.85241 0.84715 1.90785 1.36602 1.25660 1.86402 1.45940 1.53821 1.32334 1.05306 1.21426 0.99525 0.96210 0.82667 1.21368 1.02135 0.95574 0.92969 0.89102 1.21916 1.00888 0.95875 1.02420 1.21880 0.96622 0.98474 0.89451 1.60079 1.62837 1.06837 1.00402 1.21709 0.97888 0.98819 0.90124 1.19697 0.86031 0.87208 0.83552 1.90558 1.41912 1.27190 1.85109 1.42206 1.46902 1.27378 1.06445 1.19433 1.28661 1.12195 0.83208 0.86274 1.25036 0.97743 0.98137 0.95173 1.69619 1.43598 1.40038 0.98805 0.86671 0.80635 0.83467 0.78603 1.19577 1.20165 1.19537 1.48163 1.19669 1.24763 1.21275 1.22423 0.99810 0.90729 0.94827 1.21484 0.99137 1.06239 1.03464 1.23889 0.99118 0.93870 0.97015 1.77364 1.02086 1.24450 1.07361 0.90734 0.89927 0.89099 0.76228 0.91029 0.91241 0.92705 0.92589 0.91247 0.90711 0.95105 0.82866 0.93717 0.89412 0.79665 0.91589 0.81282 0.83469 0.79983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.52 8.72 37.16 0.32 -0.20 16 2 C 0.14 0.95 3.73 -69.08 -0.26 0.69 16 3 H 0.13 0.68 8.14 -51.93 -0.42 0.26 16 4 C 0.50 4.52 7.22 -10.98 -0.08 4.45 16 5 O -0.52 -7.24 16.42 5.56 0.09 -7.15 16 6 N -0.72 -4.81 5.18 -60.30 -0.31 -5.12 16 7 C 0.13 1.01 5.06 -4.05 -0.02 0.99 16 8 C -0.10 -0.82 2.63 -90.62 -0.24 -1.06 16 9 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 10 C -0.15 -1.20 8.84 37.16 0.33 -0.87 16 11 C 0.07 0.68 5.14 -3.82 -0.02 0.66 16 12 N -0.67 -9.58 6.12 -115.05 -0.70 -10.28 16 13 C 0.05 0.76 6.17 -4.97 -0.03 0.73 16 14 C 0.45 10.01 7.82 -10.99 -0.09 9.92 16 15 O -0.57 -14.90 15.78 5.55 0.09 -14.82 16 16 N -0.59 -13.89 5.09 -10.97 -0.06 -13.94 16 17 C -0.31 -8.60 10.16 -14.93 -0.15 -8.75 16 18 H 0.12 3.82 7.39 -52.49 -0.39 3.44 16 19 C 0.04 1.15 5.50 -17.47 -0.10 1.05 16 20 N -0.88 -25.55 13.96 55.50 0.77 -24.78 16 21 Si 0.88 19.21 27.74 -169.99 -4.71 14.49 16 22 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 23 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16 24 H -0.27 -5.36 6.52 56.52 0.37 -4.99 16 25 N -0.36 -3.35 3.02 -55.99 -0.17 -3.52 16 26 C 0.07 0.55 10.58 -17.23 -0.18 0.37 16 27 C -0.27 -2.22 10.80 -40.01 -0.43 -2.65 16 28 C 0.05 0.43 12.03 -17.36 -0.21 0.22 16 29 N -0.29 -3.29 12.58 30.63 0.39 -2.91 16 30 H 0.07 0.25 7.15 -51.93 -0.37 -0.12 16 31 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.09 0.12 7.56 -51.93 -0.39 -0.27 16 33 H 0.40 1.59 7.07 -40.82 -0.29 1.30 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.05 0.33 7.18 -51.93 -0.37 -0.04 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.07 0.64 6.68 -51.93 -0.35 0.30 16 39 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.35 5.20 6.68 -39.29 -0.26 4.93 16 42 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 44 H 0.37 7.65 5.76 -40.82 -0.24 7.41 16 45 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 46 H 0.17 0.89 7.26 -52.49 -0.38 0.51 16 47 H 0.15 0.84 8.06 -52.48 -0.42 0.42 16 48 H 0.18 1.06 8.06 -52.49 -0.42 0.63 16 LS Contribution 399.61 15.07 6.02 6.02 Total: -1.00 -37.89 399.61 -7.03 -44.91 By element: Atomic # 1 Polarization: 18.82 SS G_CDS: -7.28 Total: 11.54 kcal Atomic # 6 Polarization: 6.70 SS G_CDS: -1.15 Total: 5.55 kcal Atomic # 7 Polarization: -60.47 SS G_CDS: -0.08 Total: -60.55 kcal Atomic # 8 Polarization: -22.14 SS G_CDS: 0.18 Total: -21.96 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -4.71 Total: 14.49 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -37.89 -7.03 -44.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568160352.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.916 kcal (2) G-P(sol) polarization free energy of solvation -37.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds