Wall clock time and date at job start Tue Mar 31 2020 20:04:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47025 * 2 1 4 4 C 1.50704 * 109.46942 * 240.00500 * 2 1 3 5 5 O 1.21277 * 119.99832 * 239.99867 * 4 2 1 6 6 N 1.34781 * 119.99940 * 59.99782 * 4 2 1 7 7 C 1.46497 * 120.00055 * 179.97438 * 6 4 2 8 8 C 1.52993 * 109.47162 * 180.02562 * 7 6 4 9 9 H 1.09002 * 109.47076 * 304.99867 * 8 7 6 10 10 C 1.53004 * 109.47412 * 64.99947 * 8 7 6 11 11 C 1.53006 * 109.47268 * 185.00067 * 8 7 6 12 12 N 1.46898 * 109.47138 * 174.99901 * 11 8 7 13 13 C 1.46906 * 110.99888 * 180.02562 * 12 11 8 14 14 C 1.50699 * 109.47140 * 179.97438 * 13 12 11 15 15 O 1.21289 * 119.99678 * 0.02562 * 14 13 12 16 16 N 1.34777 * 119.99614 * 180.02562 * 14 13 12 17 17 C 1.37097 * 119.99518 * 180.02562 * 16 14 13 18 18 H 1.07996 * 120.00466 * 359.97438 * 17 16 14 19 19 C 1.38949 * 120.00085 * 179.97438 * 17 16 14 20 20 N 1.31408 * 120.00498 * 179.97438 * 19 17 16 21 21 Si 1.86805 * 119.99920 * 359.97438 * 19 17 16 22 22 H 1.48499 * 109.47441 * 89.99762 * 21 19 17 23 23 H 1.48495 * 109.46914 * 210.00201 * 21 19 17 24 24 H 1.48508 * 109.46806 * 329.99819 * 21 19 17 25 25 N 1.46501 * 109.47429 * 120.00492 * 2 1 3 26 26 C 1.34940 * 126.03524 * 34.71276 * 25 2 1 27 27 C 1.35319 * 107.74203 * 179.83725 * 26 25 2 28 28 C 1.39868 * 107.92047 * 0.42848 * 27 26 25 29 29 N 1.30840 * 108.20373 * 359.73179 * 28 27 26 30 30 H 1.09005 * 109.47025 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.46589 * 299.99307 * 1 2 3 32 32 H 1.08997 * 109.47617 * 59.99344 * 1 2 3 33 33 H 0.96998 * 120.00074 * 0.02562 * 6 4 2 34 34 H 1.09005 * 109.46785 * 59.99797 * 7 6 4 35 35 H 1.09001 * 109.46833 * 299.99849 * 7 6 4 36 36 H 1.09000 * 109.46646 * 300.00184 * 10 8 7 37 37 H 1.08997 * 109.46495 * 60.00353 * 10 8 7 38 38 H 1.09001 * 109.47106 * 179.97438 * 10 8 7 39 39 H 1.08997 * 109.46770 * 54.99847 * 11 8 7 40 40 H 1.08995 * 109.47019 * 295.00060 * 11 8 7 41 41 H 1.00901 * 111.00121 * 56.04666 * 12 11 8 42 42 H 1.09004 * 109.47040 * 299.99934 * 13 12 11 43 43 H 1.09000 * 109.47033 * 59.99886 * 13 12 11 44 44 H 0.96996 * 120.00269 * 359.97438 * 16 14 13 45 45 H 0.97002 * 120.00283 * 180.02562 * 20 19 17 46 46 H 1.08002 * 126.12953 * 0.02562 * 26 25 2 47 47 H 1.08004 * 126.03719 * 180.15793 * 27 26 25 48 48 H 1.08002 * 125.89427 * 179.71761 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 8 2.7295 -1.6964 -1.1194 6 7 1.7066 -0.2497 -2.4547 7 6 2.1953 -0.9399 -3.6509 8 6 1.6857 -0.2183 -4.9000 9 1 0.5994 -0.1402 -4.8566 10 6 2.2957 1.1835 -4.9638 11 6 2.0909 -1.0080 -6.1463 12 7 1.5007 -0.3812 -7.3365 13 6 1.8688 -1.1146 -8.5550 14 6 1.2461 -0.4441 -9.7524 15 8 0.5633 0.5475 -9.6052 16 7 1.4479 -0.9463 -10.9866 17 6 0.8819 -0.3360 -12.0760 18 1 0.2739 0.5470 -11.9450 19 6 1.0903 -0.8534 -13.3486 20 7 0.5474 -0.2687 -14.3927 21 14 2.1425 -2.3802 -13.5753 22 1 1.2842 -3.5893 -13.4945 23 1 2.8056 -2.3316 -14.9031 24 1 3.1741 -2.4332 -12.5084 25 7 2.0184 -0.6907 1.1961 26 6 1.4374 -1.7526 1.7924 27 6 2.1968 -2.0930 2.8594 28 6 3.2736 -1.2026 2.9228 29 7 3.1678 -0.3615 1.9261 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 1.1492 0.5391 -2.5436 34 1 1.8324 -1.9678 -3.6511 35 1 3.2853 -0.9394 -3.6508 36 1 2.0070 1.7460 -4.0760 37 1 3.3820 1.1052 -5.0072 38 1 1.9329 1.6974 -5.8540 39 1 1.7313 -2.0333 -6.0595 40 1 3.1770 -1.0105 -6.2376 41 1 1.7676 0.5896 -7.4039 42 1 2.9534 -1.1182 -8.6633 43 1 1.5073 -2.1405 -8.4847 44 1 1.9943 -1.7391 -11.1043 45 1 0.6926 -0.6301 -15.2811 46 1 0.5305 -2.2448 1.4733 47 1 2.0031 -2.9056 3.5440 48 1 4.0570 -1.2082 3.6662 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568160352.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:04:23 Heat of formation + Delta-G solvation = -19.158011 kcal Electronic energy + Delta-G solvation = -27835.096846 eV Core-core repulsion = 23732.793631 eV Total energy + Delta-G solvation = -4102.303215 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.27345 -40.79810 -40.31175 -38.40285 -36.24724 -35.79047 -35.58045 -33.77752 -33.27968 -31.04569 -30.42265 -28.93578 -27.87809 -26.60181 -25.61148 -24.30467 -22.44428 -21.99295 -21.52726 -21.28420 -20.73664 -20.22969 -18.73263 -18.21901 -17.82552 -17.23330 -16.81903 -16.78438 -16.58787 -15.94514 -15.79978 -15.62619 -15.24404 -15.08300 -14.99303 -14.58002 -14.51486 -14.44587 -14.25647 -13.90854 -13.74645 -13.55607 -13.49839 -13.38399 -13.24541 -13.14248 -12.83010 -12.62666 -12.41545 -12.11978 -11.97311 -11.86060 -11.76534 -11.65785 -11.51671 -11.24250 -10.44713 -10.36541 -10.25093 -10.21585 -9.52281 -9.33509 -8.41660 -6.02582 0.87459 1.30160 1.35472 1.38022 1.43902 1.44273 1.95181 1.97239 2.12776 2.22632 2.74483 3.14792 3.38093 3.44242 3.60338 3.79797 3.88044 3.91428 3.97727 3.98160 4.13863 4.17153 4.42605 4.51519 4.54204 4.55299 4.56851 4.62001 4.71178 4.73035 4.78625 4.87984 4.93749 4.99979 5.07980 5.15482 5.20097 5.32071 5.40602 5.52277 5.73457 5.89944 6.03551 6.04735 6.37998 6.41406 6.59365 6.75301 6.87650 7.05773 7.39481 7.95676 8.75856 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.035307 B = 0.001487 C = 0.001459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.853354 B =18828.860098 C =19182.693755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.141 3.859 3 H 0.140 0.860 4 C 0.500 3.500 5 O -0.574 6.574 6 N -0.705 5.705 7 C 0.133 3.867 8 C -0.088 4.088 9 H 0.092 0.908 10 C -0.152 4.152 11 C 0.066 3.934 12 N -0.684 5.684 13 C 0.060 3.940 14 C 0.448 3.552 15 O -0.614 6.614 16 N -0.591 5.591 17 C -0.330 4.330 18 H 0.056 0.944 19 C -0.013 4.013 20 N -0.934 5.934 21 Si 0.964 3.036 22 H -0.257 1.257 23 H -0.276 1.276 24 H -0.232 1.232 25 N -0.365 5.365 26 C 0.060 3.940 27 C -0.286 4.286 28 C 0.038 3.962 29 N -0.338 5.338 30 H 0.074 0.926 31 H 0.091 0.909 32 H 0.113 0.887 33 H 0.418 0.582 34 H 0.066 0.934 35 H 0.059 0.941 36 H 0.073 0.927 37 H 0.054 0.946 38 H 0.053 0.947 39 H 0.083 0.917 40 H 0.041 0.959 41 H 0.345 0.655 42 H 0.075 0.925 43 H 0.114 0.886 44 H 0.390 0.610 45 H 0.279 0.721 46 H 0.195 0.805 47 H 0.168 0.832 48 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.563 -4.469 33.897 34.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.035 3.965 3 H 0.157 0.843 4 C 0.285 3.715 5 O -0.452 6.452 6 N -0.358 5.358 7 C 0.009 3.991 8 C -0.107 4.107 9 H 0.110 0.890 10 C -0.210 4.210 11 C -0.064 4.064 12 N -0.317 5.317 13 C -0.072 4.072 14 C 0.236 3.764 15 O -0.498 6.498 16 N -0.233 5.233 17 C -0.459 4.459 18 H 0.074 0.926 19 C -0.212 4.212 20 N -0.574 5.574 21 Si 0.784 3.216 22 H -0.182 1.182 23 H -0.201 1.201 24 H -0.155 1.155 25 N -0.148 5.148 26 C -0.085 4.085 27 C -0.315 4.315 28 C -0.148 4.148 29 N -0.159 5.159 30 H 0.093 0.907 31 H 0.110 0.890 32 H 0.132 0.868 33 H 0.256 0.744 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.092 0.908 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.101 0.899 40 H 0.059 0.941 41 H 0.165 0.835 42 H 0.093 0.907 43 H 0.132 0.868 44 H 0.225 0.775 45 H 0.089 0.911 46 H 0.212 0.788 47 H 0.185 0.815 48 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 3.435 -3.727 33.194 33.579 hybrid contribution 0.830 -0.672 -0.716 1.286 sum 4.264 -4.399 32.478 33.051 Atomic orbital electron populations 1.22224 0.87521 1.05052 1.06528 1.21346 0.98240 0.97507 0.79402 0.84254 1.21170 0.80064 0.84521 0.85740 1.90759 1.39151 1.28164 1.87175 1.45805 1.53212 1.32396 1.04420 1.21258 0.98866 0.96069 0.82936 1.21216 1.02089 0.95379 0.92042 0.89012 1.21903 1.00731 0.95723 1.02626 1.21971 0.97094 0.98832 0.88456 1.60086 1.63934 1.06728 1.00980 1.21639 0.98956 0.99087 0.87532 1.20990 0.84402 0.86256 0.84745 1.90537 1.43757 1.29457 1.86053 1.42040 1.47411 1.28041 1.05791 1.19020 1.29699 1.11545 0.85663 0.92581 1.26095 0.98958 1.02299 0.93871 1.69800 1.45419 1.42521 0.99689 0.85377 0.79081 0.77594 0.79539 1.18185 1.20073 1.15499 1.48411 1.19325 1.25286 1.21748 1.22957 1.00532 0.90371 0.94661 1.21857 0.98888 1.06701 1.04018 1.24391 0.99882 0.93560 0.96940 1.77276 1.03709 1.26157 1.08736 0.90708 0.89046 0.86808 0.74384 0.91556 0.92276 0.90784 0.92715 0.92780 0.89887 0.94096 0.83478 0.90739 0.86775 0.77484 0.91147 0.78806 0.81461 0.77877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.61 8.72 71.98 0.63 0.02 16 2 C 0.14 1.66 3.73 44.25 0.17 1.83 16 3 H 0.14 1.27 8.14 -2.38 -0.02 1.25 16 4 C 0.50 8.47 7.22 87.66 0.63 9.10 16 5 O -0.57 -15.85 16.42 -3.02 -0.05 -15.89 16 6 N -0.70 -8.03 5.18 -463.06 -2.40 -10.42 16 7 C 0.13 1.90 5.06 86.38 0.44 2.34 16 8 C -0.09 -1.25 2.63 -10.79 -0.03 -1.27 16 9 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 10 C -0.15 -2.11 8.84 71.98 0.64 -1.47 16 11 C 0.07 1.19 5.14 86.31 0.44 1.63 16 12 N -0.68 -18.27 6.12 -517.92 -3.17 -21.44 16 13 C 0.06 1.75 6.17 85.56 0.53 2.28 16 14 C 0.45 19.76 7.82 87.66 0.69 20.45 16 15 O -0.61 -33.29 15.78 -3.06 -0.05 -33.33 16 16 N -0.59 -27.47 5.09 -306.99 -1.56 -29.04 16 17 C -0.33 -19.19 10.16 84.04 0.85 -18.33 16 18 H 0.06 3.88 7.39 -2.91 -0.02 3.86 16 19 C -0.01 -0.74 5.50 84.93 0.47 -0.28 16 20 N -0.93 -55.94 13.96 21.66 0.30 -55.63 16 21 Si 0.96 38.40 27.74 68.60 1.90 40.31 16 22 H -0.26 -9.74 7.11 99.48 0.71 -9.04 16 23 H -0.28 -10.93 7.11 99.48 0.71 -10.22 16 24 H -0.23 -7.74 6.52 99.48 0.65 -7.09 16 25 N -0.37 -6.58 3.02 -331.05 -1.00 -7.58 16 26 C 0.06 0.92 10.58 83.54 0.88 1.80 16 27 C -0.29 -4.35 10.80 21.99 0.24 -4.11 16 28 C 0.04 0.67 12.03 85.24 1.02 1.70 16 29 N -0.34 -7.58 12.58 -57.02 -0.72 -8.30 16 30 H 0.07 0.32 7.15 -2.38 -0.02 0.30 16 31 H 0.09 0.25 8.14 -2.38 -0.02 0.23 16 32 H 0.11 -0.08 7.56 -2.39 -0.02 -0.10 16 33 H 0.42 2.14 7.07 -92.71 -0.66 1.49 16 34 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 35 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.07 0.72 7.18 -2.39 -0.02 0.70 16 37 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.05 0.94 6.68 -2.39 -0.02 0.93 16 39 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.35 9.89 6.68 -89.69 -0.60 9.29 16 42 H 0.07 1.78 8.14 -2.38 -0.02 1.76 16 43 H 0.11 2.79 8.14 -2.39 -0.02 2.77 16 44 H 0.39 14.94 5.76 -92.71 -0.53 14.41 16 45 H 0.28 15.27 8.31 -92.71 -0.77 14.50 16 46 H 0.20 1.68 7.26 -2.91 -0.02 1.66 16 47 H 0.17 1.66 8.06 -2.91 -0.02 1.63 16 48 H 0.20 2.25 8.06 -2.91 -0.02 2.23 16 Total: -1.00 -88.97 399.61 0.01 -88.96 By element: Atomic # 1 Polarization: 37.55 SS G_CDS: -0.85 Total: 36.70 kcal Atomic # 6 Polarization: 8.09 SS G_CDS: 7.60 Total: 15.68 kcal Atomic # 7 Polarization: -123.88 SS G_CDS: -8.55 Total: -132.42 kcal Atomic # 8 Polarization: -49.13 SS G_CDS: -0.10 Total: -49.23 kcal Atomic # 14 Polarization: 38.40 SS G_CDS: 1.90 Total: 40.31 kcal Total: -88.97 0.01 -88.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568160352.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.804 kcal (2) G-P(sol) polarization free energy of solvation -88.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds