Wall clock time and date at job start Tue Mar 31 2020 20:04:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.47066 * 2 1 4 4 C 1.53006 * 109.47002 * 119.99631 * 2 1 3 5 5 N 1.46898 * 109.47138 * 295.00272 * 4 2 1 6 6 C 1.46906 * 110.99888 * 180.02562 * 5 4 2 7 7 C 1.50699 * 109.47140 * 179.97438 * 6 5 4 8 8 O 1.21289 * 119.99678 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99614 * 180.02562 * 7 6 5 10 10 C 1.37097 * 119.99518 * 180.02562 * 9 7 6 11 11 H 1.07996 * 120.00466 * 359.97438 * 10 9 7 12 12 C 1.38949 * 120.00085 * 179.97438 * 10 9 7 13 13 N 1.31416 * 119.99807 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 120.00303 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.46680 * 60.00313 * 14 12 10 16 16 H 1.48496 * 109.46939 * 179.97438 * 14 12 10 17 17 H 1.48492 * 109.47298 * 300.00205 * 14 12 10 18 18 C 1.52993 * 109.47412 * 239.99914 * 2 1 3 19 19 N 1.46497 * 109.47162 * 64.99947 * 18 2 1 20 20 C 1.34781 * 120.00055 * 180.02562 * 19 18 2 21 21 O 1.21277 * 120.00228 * 359.97438 * 20 19 18 22 22 C 1.50704 * 119.99940 * 179.97438 * 20 19 18 23 23 H 1.08993 * 109.46988 * 59.99884 * 22 20 19 24 24 C 1.53000 * 109.46826 * 300.00056 * 22 20 19 25 25 N 1.46501 * 109.47065 * 180.02562 * 22 20 19 26 26 C 1.34947 * 126.03446 * 85.00121 * 25 22 20 27 27 C 1.35311 * 107.74416 * 179.97438 * 26 25 22 28 28 C 1.39868 * 107.92273 * 0.02562 * 27 26 25 29 29 N 1.30846 * 108.19783 * 359.73800 * 28 27 26 30 30 H 1.09001 * 109.47106 * 299.99913 * 1 2 3 31 31 H 1.09000 * 109.46646 * 60.00270 * 1 2 3 32 32 H 1.08997 * 109.46495 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.46770 * 175.00218 * 4 2 1 34 34 H 1.08995 * 109.47019 * 55.00432 * 4 2 1 35 35 H 1.00901 * 111.00121 * 56.04666 * 5 4 2 36 36 H 1.09004 * 109.47040 * 299.99934 * 6 5 4 37 37 H 1.09000 * 109.47033 * 59.99886 * 6 5 4 38 38 H 0.96996 * 120.00269 * 359.97438 * 9 7 6 39 39 H 0.97002 * 120.00022 * 179.97438 * 13 12 10 40 40 H 1.09005 * 109.47499 * 184.99789 * 18 2 1 41 41 H 1.09001 * 109.47061 * 305.00314 * 18 2 1 42 42 H 0.96998 * 119.99871 * 359.97438 * 19 18 2 43 43 H 1.09007 * 109.47078 * 179.97438 * 24 22 20 44 44 H 1.09001 * 109.47503 * 299.99757 * 24 22 20 45 45 H 1.08997 * 109.47374 * 60.00376 * 24 22 20 46 46 H 1.07998 * 126.12887 * 359.97438 * 26 25 22 47 47 H 1.08001 * 126.04195 * 180.02562 * 27 26 25 48 48 H 1.08000 * 125.90118 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6513 0.0375 2.4457 6 6 2.1257 -0.6264 3.6673 7 6 1.7097 0.1794 4.8709 8 8 1.0796 1.2055 4.7253 9 7 2.0379 -0.2402 6.1089 10 6 1.6589 0.4926 7.2038 11 1 1.0979 1.4062 7.0744 12 6 1.9967 0.0598 8.4803 13 7 2.6790 -1.0522 8.6379 14 14 1.4810 1.0586 9.9722 15 1 0.0003 1.1642 10.0094 16 1 1.9601 0.3871 11.2070 17 1 2.0722 2.4181 9.8863 18 6 2.0401 -0.7212 -1.2491 19 7 1.6526 0.0353 -2.4423 20 6 1.9957 -0.4137 -3.6659 21 8 2.6258 -1.4437 -3.7792 22 6 1.5966 0.3643 -4.8933 23 1 2.0311 1.3629 -4.8478 24 6 0.0717 0.4740 -4.9540 25 7 2.0840 -0.3269 -6.0895 26 6 1.4570 -1.3312 -6.7370 27 6 2.2310 -1.6919 -7.7866 28 6 3.3703 -0.8806 -7.7801 29 7 3.2807 -0.0584 -6.7662 30 1 -0.3633 0.5138 0.8900 31 1 -0.3632 0.5138 -0.8900 32 1 -0.3632 -1.0277 0.0005 33 1 3.1263 -0.7994 1.2057 34 1 1.6055 -1.7197 1.2953 35 1 0.6528 0.1794 2.4753 36 1 1.6921 -1.6245 3.7302 37 1 3.2127 -0.7036 3.6401 38 1 2.5415 -1.0610 6.2252 39 1 2.9152 -1.3542 9.5290 40 1 3.1264 -0.7994 -1.2055 41 1 1.6054 -1.7198 -1.2951 42 1 1.1483 0.8590 -2.3517 43 1 -0.2170 1.0371 -5.8416 44 1 -0.3629 -0.5246 -4.9996 45 1 -0.2913 0.9880 -4.0641 46 1 0.5075 -1.7687 -6.4660 47 1 2.0084 -2.4689 -8.5029 48 1 4.1815 -0.9223 -8.4919 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568160353.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:04:26 Heat of formation + Delta-G solvation = 4.948012 kcal Electronic energy + Delta-G solvation = -27786.187180 eV Core-core repulsion = 23684.929281 eV Total energy + Delta-G solvation = -4101.257900 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.65311 -40.06616 -38.43868 -37.36852 -35.13363 -34.96442 -33.89064 -32.37892 -31.21333 -30.41163 -29.88581 -27.47338 -27.16589 -25.46079 -24.62199 -23.21128 -21.74016 -21.37733 -20.77294 -20.05038 -19.25350 -18.13638 -17.87884 -17.55373 -16.63582 -15.98293 -15.88295 -15.60974 -15.29212 -14.92374 -14.62099 -14.51644 -14.32628 -14.06400 -13.92059 -13.74808 -13.59388 -13.25256 -13.10050 -13.05568 -12.94106 -12.79296 -12.66919 -12.24260 -12.07287 -11.62547 -11.56720 -11.28637 -11.10103 -11.03727 -10.99751 -10.96106 -10.48279 -10.45689 -10.23045 -9.69392 -9.51905 -9.50303 -8.89747 -8.49541 -8.10427 -7.98002 -6.43277 -3.84386 1.50607 1.95847 2.10088 2.59717 2.76719 3.18747 3.24701 3.28895 3.87902 3.88801 4.04444 4.10090 4.24163 4.26381 4.44836 4.62041 4.62564 4.66588 4.77451 4.82587 4.94182 5.09735 5.19578 5.23278 5.26923 5.29026 5.34432 5.44526 5.48152 5.52459 5.62960 5.71889 5.75079 5.78471 5.91189 5.95741 6.02668 6.10643 6.24537 6.33383 6.59983 6.98978 7.15618 7.39697 7.53261 7.61330 7.70141 8.04131 8.59263 9.15835 9.52299 10.03567 10.74290 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.042651 B = 0.001421 C = 0.001399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.336368 B =19695.396081 C =20006.750930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.102 4.102 3 H 0.090 0.910 4 C 0.066 3.934 5 N -0.668 5.668 6 C 0.050 3.950 7 C 0.440 3.560 8 O -0.585 6.585 9 N -0.563 5.563 10 C -0.301 4.301 11 H 0.103 0.897 12 C 0.023 3.977 13 N -0.901 5.901 14 Si 0.931 3.069 15 H -0.274 1.274 16 H -0.284 1.284 17 H -0.273 1.273 18 C 0.125 3.875 19 N -0.721 5.721 20 C 0.499 3.501 21 O -0.520 6.520 22 C 0.143 3.857 23 H 0.129 0.871 24 C -0.161 4.161 25 N -0.356 5.356 26 C 0.067 3.933 27 C -0.274 4.274 28 C 0.048 3.952 29 N -0.292 5.292 30 H 0.068 0.932 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.074 0.926 34 H 0.030 0.970 35 H 0.349 0.651 36 H 0.044 0.956 37 H 0.086 0.914 38 H 0.392 0.608 39 H 0.272 0.728 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.402 0.598 43 H 0.082 0.918 44 H 0.073 0.927 45 H 0.090 0.910 46 H 0.170 0.830 47 H 0.147 0.853 48 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.701 -1.341 -30.083 30.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.121 4.121 3 H 0.108 0.892 4 C -0.064 4.064 5 N -0.301 5.301 6 C -0.083 4.083 7 C 0.226 3.774 8 O -0.469 6.469 9 N -0.199 5.199 10 C -0.431 4.431 11 H 0.120 0.880 12 C -0.179 4.179 13 N -0.543 5.543 14 Si 0.758 3.242 15 H -0.199 1.199 16 H -0.210 1.210 17 H -0.199 1.199 18 C 0.002 3.998 19 N -0.374 5.374 20 C 0.283 3.717 21 O -0.394 6.394 22 C 0.036 3.964 23 H 0.147 0.853 24 C -0.220 4.220 25 N -0.138 5.138 26 C -0.078 4.078 27 C -0.303 4.303 28 C -0.139 4.139 29 N -0.112 5.112 30 H 0.087 0.913 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.093 0.907 34 H 0.048 0.952 35 H 0.169 0.831 36 H 0.062 0.938 37 H 0.105 0.895 38 H 0.226 0.774 39 H 0.082 0.918 40 H 0.090 0.910 41 H 0.088 0.912 42 H 0.237 0.763 43 H 0.101 0.899 44 H 0.092 0.908 45 H 0.108 0.892 46 H 0.187 0.813 47 H 0.165 0.835 48 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -3.545 -0.064 -29.331 29.544 hybrid contribution -1.034 -1.239 0.638 1.735 sum -4.579 -1.303 -28.693 29.085 Atomic orbital electron populations 1.21907 0.94667 1.02084 1.02319 1.21371 0.96480 1.01244 0.92983 0.89155 1.21876 1.00842 0.94401 0.89312 1.60084 1.20996 1.49049 1.00015 1.21674 1.01213 0.95376 0.89988 1.19797 0.85670 0.87948 0.84031 1.90513 1.44434 1.26246 1.85708 1.41857 1.49436 1.24206 1.04426 1.19658 1.33014 1.06792 0.83625 0.87963 1.25266 0.96857 0.96633 0.99114 1.69607 1.38729 1.21722 1.24196 0.85910 0.78998 0.79443 0.79824 1.19926 1.20962 1.19869 1.21431 1.00490 0.95184 0.82722 1.45942 1.57874 1.28063 1.05497 1.20714 0.80124 0.86214 0.84694 1.90786 1.38484 1.23875 1.86292 1.21081 0.96776 0.97117 0.81387 0.85325 1.22174 0.90538 1.04323 1.04929 1.48162 1.16203 1.28104 1.21374 1.22409 0.99545 0.91691 0.94174 1.21478 0.97534 1.07541 1.03780 1.23891 0.98931 0.94429 0.96639 1.77371 1.00465 1.24472 1.08889 0.91287 0.92801 0.92606 0.90734 0.95160 0.83071 0.93844 0.89547 0.77435 0.91798 0.91035 0.91201 0.76256 0.89943 0.90783 0.89171 0.81328 0.83484 0.79977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 8.84 37.16 0.33 -0.87 16 2 C -0.10 -0.88 2.63 -90.62 -0.24 -1.12 16 3 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 4 C 0.07 0.74 5.14 -3.82 -0.02 0.72 16 5 N -0.67 -10.18 6.12 -115.05 -0.70 -10.88 16 6 C 0.05 0.87 6.17 -4.97 -0.03 0.84 16 7 C 0.44 10.28 7.82 -10.99 -0.09 10.20 16 8 O -0.58 -15.67 15.78 5.55 0.09 -15.58 16 9 N -0.56 -14.19 5.29 -10.97 -0.06 -14.25 16 10 C -0.30 -8.37 9.68 -14.93 -0.14 -8.52 16 11 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 12 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 13 N -0.90 -24.42 13.05 55.50 0.72 -23.69 16 14 Si 0.93 20.92 29.55 -169.99 -5.02 15.90 16 15 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 16 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 17 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 18 C 0.13 1.07 5.06 -4.05 -0.02 1.05 16 19 N -0.72 -5.06 5.18 -60.30 -0.31 -5.37 16 20 C 0.50 4.67 7.22 -10.98 -0.08 4.59 16 21 O -0.52 -7.40 16.42 5.56 0.09 -7.31 16 22 C 0.14 0.98 3.73 -69.08 -0.26 0.72 16 23 H 0.13 0.72 8.14 -51.93 -0.42 0.30 16 24 C -0.16 -0.52 8.73 37.16 0.32 -0.20 16 25 N -0.36 -3.42 3.02 -55.99 -0.17 -3.59 16 26 C 0.07 0.56 10.57 -17.23 -0.18 0.38 16 27 C -0.27 -2.26 10.80 -40.01 -0.43 -2.69 16 28 C 0.05 0.44 12.03 -17.36 -0.21 0.23 16 29 N -0.29 -3.36 12.58 30.63 0.39 -2.98 16 30 H 0.07 0.65 6.68 -51.93 -0.35 0.30 16 31 H 0.05 0.31 7.18 -51.93 -0.37 -0.06 16 32 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.35 5.42 6.69 -39.29 -0.26 5.16 16 36 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 38 H 0.39 9.46 7.90 -40.82 -0.32 9.14 16 39 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.40 1.71 7.07 -40.82 -0.29 1.42 16 43 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 44 H 0.07 0.25 7.15 -51.93 -0.37 -0.12 16 45 H 0.09 0.12 7.56 -51.93 -0.39 -0.28 16 46 H 0.17 0.90 7.26 -52.49 -0.38 0.52 16 47 H 0.15 0.86 8.06 -52.49 -0.42 0.43 16 48 H 0.18 1.10 8.06 -52.49 -0.42 0.67 16 LS Contribution 402.72 15.07 6.07 6.07 Total: -1.00 -36.71 402.72 -7.38 -44.09 By element: Atomic # 1 Polarization: 19.07 SS G_CDS: -7.32 Total: 11.75 kcal Atomic # 6 Polarization: 6.99 SS G_CDS: -1.14 Total: 5.84 kcal Atomic # 7 Polarization: -60.63 SS G_CDS: -0.13 Total: -60.76 kcal Atomic # 8 Polarization: -23.07 SS G_CDS: 0.18 Total: -22.89 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -36.71 -7.38 -44.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568160353.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.035 kcal (2) G-P(sol) polarization free energy of solvation -36.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds