Wall clock time and date at job start Tue Mar 31 2020 20:04:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.46991 * 2 1 4 4 C 1.53002 * 109.47104 * 240.00000 * 2 1 3 5 5 N 1.46894 * 109.47228 * 184.99716 * 4 2 1 6 6 C 1.46899 * 110.99978 * 180.02562 * 5 4 2 7 7 C 1.50698 * 109.47027 * 180.02562 * 6 5 4 8 8 O 1.21292 * 120.00271 * 0.02562 * 7 6 5 9 9 N 1.34779 * 120.00139 * 179.97438 * 7 6 5 10 10 C 1.37096 * 120.00379 * 180.02562 * 9 7 6 11 11 H 1.07998 * 119.99663 * 359.97438 * 10 9 7 12 12 C 1.38950 * 120.00193 * 180.02562 * 10 9 7 13 13 N 1.31414 * 119.99727 * 179.97438 * 12 10 9 14 14 Si 1.86804 * 119.99953 * 0.02562 * 12 10 9 15 15 H 1.48496 * 109.46899 * 89.99809 * 14 12 10 16 16 H 1.48498 * 109.46646 * 210.00047 * 14 12 10 17 17 H 1.48503 * 109.46858 * 329.99708 * 14 12 10 18 18 N 1.46499 * 109.47328 * 120.00157 * 2 1 3 19 19 C 1.46504 * 119.99815 * 59.99595 * 18 2 1 20 20 C 1.34777 * 120.00125 * 240.00241 * 18 2 1 21 21 O 1.21282 * 119.99930 * 359.97438 * 20 18 2 22 22 C 1.50696 * 119.99855 * 179.97438 * 20 18 2 23 23 C 1.52999 * 109.47018 * 179.97438 * 22 20 18 24 24 C 1.50704 * 109.47417 * 180.02562 * 23 22 20 25 25 C 1.34664 * 126.58651 * 275.03863 * 24 23 22 26 26 N 1.34134 * 108.01786 * 179.74146 * 25 24 23 27 27 C 1.30496 * 109.25675 * 0.37372 * 26 25 24 28 28 N 1.35047 * 108.70161 * 359.62603 * 27 26 25 29 29 H 0.96997 * 126.40535 * 180.25138 * 28 27 26 30 30 H 1.08998 * 109.46686 * 299.99718 * 1 2 3 31 31 H 1.08992 * 109.47161 * 60.00011 * 1 2 3 32 32 H 1.08996 * 109.46991 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47023 * 305.00217 * 4 2 1 34 34 H 1.09003 * 109.46599 * 64.99787 * 4 2 1 35 35 H 1.00908 * 110.99567 * 56.05087 * 5 4 2 36 36 H 1.09006 * 109.46955 * 300.00045 * 6 5 4 37 37 H 1.08989 * 109.47192 * 60.00271 * 6 5 4 38 38 H 0.97006 * 120.00034 * 359.97438 * 9 7 6 39 39 H 0.97002 * 119.99192 * 179.97438 * 13 12 10 40 40 H 1.09000 * 109.47264 * 269.99695 * 19 18 2 41 41 H 1.08998 * 109.47208 * 30.00488 * 19 18 2 42 42 H 1.09006 * 109.47010 * 150.00190 * 19 18 2 43 43 H 1.08999 * 109.47441 * 59.99731 * 22 20 18 44 44 H 1.08998 * 109.47505 * 299.99456 * 22 20 18 45 45 H 1.08992 * 109.47476 * 59.99861 * 23 22 20 46 46 H 1.09004 * 109.47205 * 299.99755 * 23 22 20 47 47 H 1.07998 * 125.99171 * 359.92955 * 25 24 23 48 48 H 1.08002 * 125.65353 * 179.89694 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2493 5 7 3.5040 -0.8266 -1.1905 6 6 4.0304 -1.5148 -2.3768 7 6 5.5316 -1.6043 -2.2808 8 8 6.1065 -1.1409 -1.3186 9 7 6.2354 -2.2003 -3.2637 10 6 7.6011 -2.2822 -3.1762 11 1 8.1130 -1.8688 -2.3198 12 6 8.3267 -2.8961 -4.1898 13 7 9.6358 -2.9742 -4.1060 14 14 7.4413 -3.6092 -5.6721 15 1 7.3233 -2.5693 -6.7256 16 1 8.2113 -4.7639 -6.2002 17 1 6.0855 -4.0612 -5.2686 18 7 2.0184 -0.6906 1.1961 19 6 1.6644 -2.0932 1.4279 20 6 2.7933 -0.0357 2.0833 21 8 3.0866 1.1254 1.8912 22 6 3.2951 -0.7460 3.3140 23 6 4.1457 0.2155 4.1465 24 6 4.6482 -0.4950 5.3769 25 6 3.9918 -0.6412 6.5436 26 7 4.7784 -1.3372 7.3779 27 6 5.9005 -1.6210 6.7751 28 7 5.8591 -1.1163 5.5231 29 1 6.5569 -1.1821 4.8525 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 1.6054 -1.7198 -1.2952 34 1 1.7516 -0.1583 -2.1370 35 1 3.7996 -1.2884 -0.3433 36 1 3.6095 -2.5189 -2.4309 37 1 3.7558 -0.9570 -3.2720 38 1 5.7756 -2.5719 -4.0328 39 1 10.1423 -3.4031 -4.8135 40 1 0.7376 -2.1444 1.9994 41 1 1.5295 -2.5969 0.4708 42 1 2.4629 -2.5820 1.9863 43 1 3.9005 -1.6026 3.0177 44 1 2.4472 -1.0881 3.9073 45 1 3.5408 1.0723 4.4428 46 1 4.9938 0.5573 3.5531 47 1 3.0039 -0.2665 6.7673 48 1 6.7239 -2.1722 7.2045 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568277480.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:04:47 Heat of formation + Delta-G solvation = -8.417900 kcal Electronic energy + Delta-G solvation = -29064.830870 eV Core-core repulsion = 24962.993381 eV Total energy + Delta-G solvation = -4101.837489 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.20032 -40.24599 -38.51161 -37.08550 -34.73612 -34.17537 -33.84347 -32.51456 -31.86350 -31.64604 -28.87934 -27.79656 -27.12040 -25.20965 -24.72204 -23.13398 -21.74660 -21.40782 -20.76652 -19.44594 -19.05209 -18.37129 -18.20318 -17.19123 -16.50943 -16.27866 -15.90217 -15.49691 -15.09577 -14.90620 -14.76797 -14.36273 -14.13882 -13.95233 -13.80810 -13.62658 -13.32681 -13.26120 -13.10721 -12.83902 -12.76437 -12.70937 -12.36305 -12.29216 -12.13582 -11.92487 -11.80956 -11.59645 -11.38294 -11.21643 -11.03303 -10.63465 -10.20394 -10.15079 -10.01646 -9.82295 -9.61154 -8.89474 -8.57436 -8.54692 -8.22822 -8.14603 -6.34986 -3.86431 1.83863 2.59343 2.78514 2.97858 2.98279 3.02270 3.03572 3.11523 3.70028 4.00360 4.06827 4.29549 4.54833 4.71663 4.73699 4.78455 4.80188 4.84594 4.94898 5.03486 5.06085 5.16517 5.18559 5.21460 5.28869 5.32854 5.37653 5.42799 5.44942 5.55594 5.57223 5.59921 5.75204 5.82618 5.86452 5.88990 6.00188 6.13277 6.40809 6.55034 7.06079 7.18793 7.23125 7.53191 7.55337 7.87186 8.10360 8.12076 8.56110 8.91077 9.38480 9.79000 10.78186 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009395 B = 0.002766 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2979.436947 B =10120.035027 C =12528.107749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.137 3.863 3 H 0.111 0.889 4 C 0.049 3.951 5 N -0.663 5.663 6 C 0.048 3.952 7 C 0.450 3.550 8 O -0.564 6.564 9 N -0.591 5.591 10 C -0.305 4.305 11 H 0.119 0.881 12 C 0.041 3.959 13 N -0.881 5.881 14 Si 0.880 3.120 15 H -0.270 1.270 16 H -0.277 1.277 17 H -0.270 1.270 18 N -0.613 5.613 19 C 0.073 3.927 20 C 0.519 3.481 21 O -0.528 6.528 22 C -0.133 4.133 23 C -0.031 4.031 24 C -0.017 4.017 25 C -0.027 4.027 26 N -0.497 5.497 27 C 0.181 3.819 28 N -0.565 5.565 29 H 0.423 0.577 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.056 0.944 33 H 0.028 0.972 34 H 0.083 0.917 35 H 0.348 0.652 36 H 0.042 0.958 37 H 0.088 0.912 38 H 0.370 0.630 39 H 0.273 0.727 40 H 0.057 0.943 41 H 0.070 0.930 42 H 0.073 0.927 43 H 0.093 0.907 44 H 0.096 0.904 45 H 0.095 0.905 46 H 0.083 0.917 47 H 0.168 0.832 48 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.898 -0.048 12.392 22.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.033 3.967 3 H 0.129 0.871 4 C -0.081 4.081 5 N -0.296 5.296 6 C -0.085 4.085 7 C 0.235 3.765 8 O -0.445 6.445 9 N -0.230 5.230 10 C -0.434 4.434 11 H 0.137 0.863 12 C -0.162 4.162 13 N -0.521 5.521 14 Si 0.707 3.293 15 H -0.196 1.196 16 H -0.202 1.202 17 H -0.196 1.196 18 N -0.348 5.348 19 C -0.070 4.070 20 C 0.307 3.693 21 O -0.403 6.403 22 C -0.173 4.173 23 C -0.070 4.070 24 C -0.134 4.134 25 C -0.175 4.175 26 N -0.216 5.216 27 C -0.103 4.103 28 N -0.168 5.168 29 H 0.261 0.739 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.076 0.924 33 H 0.046 0.954 34 H 0.101 0.899 35 H 0.168 0.832 36 H 0.060 0.940 37 H 0.106 0.894 38 H 0.203 0.797 39 H 0.084 0.916 40 H 0.076 0.924 41 H 0.089 0.911 42 H 0.092 0.908 43 H 0.111 0.889 44 H 0.114 0.886 45 H 0.113 0.887 46 H 0.101 0.899 47 H 0.185 0.815 48 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -18.254 1.227 13.438 22.700 hybrid contribution -0.200 -1.694 -2.361 2.913 sum -18.453 -0.467 11.077 21.528 Atomic orbital electron populations 1.22087 0.94684 1.02200 1.02660 1.21158 0.93341 0.99025 0.83137 0.87103 1.22348 0.88833 0.98806 0.98159 1.59967 1.07679 1.57250 1.04682 1.21717 0.94854 0.96954 0.94968 1.19711 0.88019 0.83769 0.84984 1.90565 1.71009 1.50094 1.32865 1.42211 1.07872 1.52934 1.20023 1.19419 0.79539 1.35975 1.08436 0.86350 1.25042 0.95444 0.97670 0.98019 1.69624 1.05073 1.43396 1.34046 0.86663 0.79493 0.79792 0.83370 1.19557 1.20174 1.19579 1.47862 1.51522 1.12311 1.23070 1.21801 1.01017 0.81832 1.02378 1.20561 0.77608 0.87032 0.84106 1.90723 1.56516 1.16976 1.76119 1.21684 1.01267 0.99771 0.94605 1.19778 1.00118 0.96455 0.90624 1.21322 0.87976 1.04608 0.99449 1.22092 1.01005 1.04184 0.90258 1.70276 1.02721 1.16279 1.32354 1.24975 0.99525 1.03101 0.82676 1.43393 1.15876 1.42782 1.14743 0.73895 0.92055 0.91237 0.92449 0.95365 0.89899 0.83166 0.94019 0.89416 0.79708 0.91596 0.92404 0.91093 0.90843 0.88873 0.88604 0.88686 0.89867 0.81516 0.77651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.18 9.19 37.16 0.34 -0.84 16 2 C 0.14 1.43 2.95 -67.93 -0.20 1.23 16 3 H 0.11 1.49 6.90 -51.93 -0.36 1.13 16 4 C 0.05 0.54 4.98 -3.83 -0.02 0.52 16 5 N -0.66 -10.36 6.12 -115.06 -0.70 -11.06 16 6 C 0.05 0.78 6.17 -4.98 -0.03 0.75 16 7 C 0.45 10.19 7.82 -10.99 -0.09 10.10 16 8 O -0.56 -15.17 15.78 5.55 0.09 -15.09 16 9 N -0.59 -13.99 5.09 -10.96 -0.06 -14.04 16 10 C -0.30 -8.59 10.16 -14.93 -0.15 -8.74 16 11 H 0.12 3.82 7.39 -52.49 -0.39 3.43 16 12 C 0.04 1.12 5.50 -17.47 -0.10 1.03 16 13 N -0.88 -25.60 13.96 55.50 0.77 -24.82 16 14 Si 0.88 19.17 27.74 -169.99 -4.72 14.46 16 15 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 16 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 17 H -0.27 -5.33 6.52 56.52 0.37 -4.96 16 18 N -0.61 -6.20 1.83 -173.93 -0.32 -6.52 16 19 C 0.07 0.51 9.28 59.85 0.56 1.07 16 20 C 0.52 6.27 7.67 -10.99 -0.08 6.19 16 21 O -0.53 -8.52 15.31 5.56 0.09 -8.44 16 22 C -0.13 -1.20 4.23 -27.89 -0.12 -1.32 16 23 C -0.03 -0.30 5.06 -27.88 -0.14 -0.44 16 24 C -0.02 -0.17 6.49 -81.60 -0.53 -0.70 16 25 C -0.03 -0.29 11.79 -17.81 -0.21 -0.50 16 26 N -0.50 -5.93 11.25 -14.66 -0.16 -6.09 16 27 C 0.18 1.66 13.04 -90.37 -1.18 0.49 16 28 N -0.56 -4.95 6.15 -10.30 -0.06 -5.01 16 29 H 0.42 2.89 8.96 -40.82 -0.37 2.52 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.37 7.67 -51.93 -0.40 -0.03 16 33 H 0.03 0.27 6.88 -51.93 -0.36 -0.09 16 34 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.35 5.75 7.56 -39.29 -0.30 5.45 16 36 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.09 1.29 8.14 -51.94 -0.42 0.87 16 38 H 0.37 7.66 5.76 -40.82 -0.24 7.43 16 39 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 40 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.07 0.48 6.53 -51.93 -0.34 0.14 16 42 H 0.07 0.47 6.44 -51.93 -0.33 0.14 16 43 H 0.09 0.82 7.40 -51.93 -0.38 0.44 16 44 H 0.10 0.67 8.11 -51.93 -0.42 0.25 16 45 H 0.09 0.92 8.10 -51.93 -0.42 0.50 16 46 H 0.08 0.94 8.10 -51.93 -0.42 0.52 16 47 H 0.17 1.46 8.06 -52.49 -0.42 1.04 16 48 H 0.21 1.12 8.06 -52.49 -0.42 0.70 16 LS Contribution 397.37 15.07 5.99 5.99 Total: -1.00 -37.47 397.37 -8.30 -45.77 By element: Atomic # 1 Polarization: 23.29 SS G_CDS: -7.27 Total: 16.02 kcal Atomic # 6 Polarization: 10.79 SS G_CDS: -1.95 Total: 8.84 kcal Atomic # 7 Polarization: -67.02 SS G_CDS: -0.53 Total: -67.55 kcal Atomic # 8 Polarization: -23.70 SS G_CDS: 0.17 Total: -23.52 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -4.72 Total: 14.46 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -37.47 -8.30 -45.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568277480.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.354 kcal (2) G-P(sol) polarization free energy of solvation -37.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds