Wall clock time and date at job start Tue Mar 31 2020 20:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.46991 * 2 1 4 4 C 1.53002 * 109.47104 * 240.00000 * 2 1 3 5 5 N 1.46894 * 109.47228 * 184.99716 * 4 2 1 6 6 C 1.46899 * 110.99978 * 180.02562 * 5 4 2 7 7 C 1.50698 * 109.47027 * 180.02562 * 6 5 4 8 8 O 1.21292 * 120.00271 * 0.02562 * 7 6 5 9 9 N 1.34779 * 120.00139 * 179.97438 * 7 6 5 10 10 C 1.37096 * 120.00379 * 180.02562 * 9 7 6 11 11 H 1.07998 * 119.99663 * 359.97438 * 10 9 7 12 12 C 1.38950 * 120.00193 * 180.02562 * 10 9 7 13 13 N 1.31414 * 119.99727 * 179.97438 * 12 10 9 14 14 Si 1.86804 * 119.99953 * 0.02562 * 12 10 9 15 15 H 1.48496 * 109.46899 * 89.99809 * 14 12 10 16 16 H 1.48498 * 109.46646 * 210.00047 * 14 12 10 17 17 H 1.48503 * 109.46858 * 329.99708 * 14 12 10 18 18 N 1.46499 * 109.47328 * 120.00157 * 2 1 3 19 19 C 1.46504 * 119.99815 * 59.99595 * 18 2 1 20 20 C 1.34777 * 120.00125 * 240.00241 * 18 2 1 21 21 O 1.21282 * 119.99930 * 359.97438 * 20 18 2 22 22 C 1.50696 * 119.99855 * 179.97438 * 20 18 2 23 23 C 1.52999 * 109.47018 * 179.97438 * 22 20 18 24 24 C 1.50704 * 109.47417 * 180.02562 * 23 22 20 25 25 C 1.34664 * 126.58651 * 275.03863 * 24 23 22 26 26 N 1.34134 * 108.01786 * 179.74146 * 25 24 23 27 27 C 1.30496 * 109.25675 * 0.37372 * 26 25 24 28 28 N 1.35047 * 108.70161 * 359.62603 * 27 26 25 29 29 H 0.96997 * 126.40535 * 180.25138 * 28 27 26 30 30 H 1.08998 * 109.46686 * 299.99718 * 1 2 3 31 31 H 1.08992 * 109.47161 * 60.00011 * 1 2 3 32 32 H 1.08996 * 109.46991 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47023 * 305.00217 * 4 2 1 34 34 H 1.09003 * 109.46599 * 64.99787 * 4 2 1 35 35 H 1.00908 * 110.99567 * 56.05087 * 5 4 2 36 36 H 1.09006 * 109.46955 * 300.00045 * 6 5 4 37 37 H 1.08989 * 109.47192 * 60.00271 * 6 5 4 38 38 H 0.97006 * 120.00034 * 359.97438 * 9 7 6 39 39 H 0.97002 * 119.99192 * 179.97438 * 13 12 10 40 40 H 1.09000 * 109.47264 * 269.99695 * 19 18 2 41 41 H 1.08998 * 109.47208 * 30.00488 * 19 18 2 42 42 H 1.09006 * 109.47010 * 150.00190 * 19 18 2 43 43 H 1.08999 * 109.47441 * 59.99731 * 22 20 18 44 44 H 1.08998 * 109.47505 * 299.99456 * 22 20 18 45 45 H 1.08992 * 109.47476 * 59.99861 * 23 22 20 46 46 H 1.09004 * 109.47205 * 299.99755 * 23 22 20 47 47 H 1.07998 * 125.99171 * 359.92955 * 25 24 23 48 48 H 1.08002 * 125.65353 * 179.89694 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2493 5 7 3.5040 -0.8266 -1.1905 6 6 4.0304 -1.5148 -2.3768 7 6 5.5316 -1.6043 -2.2808 8 8 6.1065 -1.1409 -1.3186 9 7 6.2354 -2.2003 -3.2637 10 6 7.6011 -2.2822 -3.1762 11 1 8.1130 -1.8688 -2.3198 12 6 8.3267 -2.8961 -4.1898 13 7 9.6358 -2.9742 -4.1060 14 14 7.4413 -3.6092 -5.6721 15 1 7.3233 -2.5693 -6.7256 16 1 8.2113 -4.7639 -6.2002 17 1 6.0855 -4.0612 -5.2686 18 7 2.0184 -0.6906 1.1961 19 6 1.6644 -2.0932 1.4279 20 6 2.7933 -0.0357 2.0833 21 8 3.0866 1.1254 1.8912 22 6 3.2951 -0.7460 3.3140 23 6 4.1457 0.2155 4.1465 24 6 4.6482 -0.4950 5.3769 25 6 3.9918 -0.6412 6.5436 26 7 4.7784 -1.3372 7.3779 27 6 5.9005 -1.6210 6.7751 28 7 5.8591 -1.1163 5.5231 29 1 6.5569 -1.1821 4.8525 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 1.6054 -1.7198 -1.2952 34 1 1.7516 -0.1583 -2.1370 35 1 3.7996 -1.2884 -0.3433 36 1 3.6095 -2.5189 -2.4309 37 1 3.7558 -0.9570 -3.2720 38 1 5.7756 -2.5719 -4.0328 39 1 10.1423 -3.4031 -4.8135 40 1 0.7376 -2.1444 1.9994 41 1 1.5295 -2.5969 0.4708 42 1 2.4629 -2.5820 1.9863 43 1 3.9005 -1.6026 3.0177 44 1 2.4472 -1.0881 3.9073 45 1 3.5408 1.0723 4.4428 46 1 4.9938 0.5573 3.5531 47 1 3.0039 -0.2665 6.7673 48 1 6.7239 -2.1722 7.2045 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568277480.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:04:46 Heat of formation + Delta-G solvation = -37.262943 kcal Electronic energy + Delta-G solvation = -29066.081685 eV Core-core repulsion = 24962.993381 eV Total energy + Delta-G solvation = -4103.088304 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.95901 -41.14012 -40.28381 -38.09926 -36.18459 -35.53778 -34.97857 -33.77112 -33.29253 -32.62983 -29.65235 -29.11378 -27.77093 -26.63683 -25.68930 -24.45148 -22.51088 -22.21782 -21.55285 -21.29985 -20.32787 -19.83971 -18.97085 -18.08919 -17.86019 -17.27932 -17.03788 -16.76014 -16.55514 -15.86852 -15.83519 -15.50125 -15.39247 -15.04363 -14.83837 -14.57081 -14.47403 -14.29307 -14.19041 -14.10114 -13.82679 -13.70861 -13.41707 -13.22121 -13.05034 -12.98009 -12.89414 -12.78109 -12.45504 -12.42636 -12.17822 -11.99218 -11.85203 -11.53852 -11.00652 -10.95416 -10.77038 -10.48678 -10.27291 -9.65823 -9.32210 -9.26912 -8.43446 -6.04626 1.08826 1.28356 1.34714 1.43383 1.68724 1.92825 2.02453 2.20784 2.21492 2.31633 2.70518 3.12867 3.35587 3.53236 3.86749 3.94554 3.97732 4.03607 4.11713 4.17347 4.22939 4.29882 4.33993 4.40020 4.47248 4.52393 4.56385 4.64446 4.68490 4.70670 4.75424 4.81849 4.84067 4.95738 5.06311 5.15281 5.29754 5.35489 5.50429 5.65227 5.78749 5.88359 6.04646 6.33210 6.43247 6.51614 6.57702 6.85706 7.11493 7.24294 7.37169 7.94049 8.74279 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009395 B = 0.002766 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2979.436947 B =10120.035027 C =12528.107749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.135 3.865 3 H 0.073 0.927 4 C 0.053 3.947 5 N -0.690 5.690 6 C 0.063 3.937 7 C 0.446 3.554 8 O -0.616 6.616 9 N -0.590 5.590 10 C -0.329 4.329 11 H 0.053 0.947 12 C -0.015 4.015 13 N -0.935 5.935 14 Si 0.966 3.034 15 H -0.259 1.259 16 H -0.275 1.275 17 H -0.229 1.229 18 N -0.609 5.609 19 C 0.066 3.934 20 C 0.509 3.491 21 O -0.581 6.581 22 C -0.122 4.122 23 C -0.023 4.023 24 C -0.022 4.022 25 C -0.039 4.039 26 N -0.535 5.535 27 C 0.186 3.814 28 N -0.563 5.563 29 H 0.430 0.570 30 H 0.055 0.945 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.058 0.942 34 H 0.094 0.906 35 H 0.340 0.660 36 H 0.080 0.920 37 H 0.114 0.886 38 H 0.390 0.610 39 H 0.279 0.721 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.078 0.922 43 H 0.097 0.903 44 H 0.122 0.878 45 H 0.092 0.908 46 H 0.060 0.940 47 H 0.180 0.820 48 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.424 -2.342 10.679 24.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.031 3.969 3 H 0.091 0.909 4 C -0.077 4.077 5 N -0.323 5.323 6 C -0.069 4.069 7 C 0.234 3.766 8 O -0.500 6.500 9 N -0.231 5.231 10 C -0.458 4.458 11 H 0.071 0.929 12 C -0.214 4.214 13 N -0.575 5.575 14 Si 0.786 3.214 15 H -0.183 1.183 16 H -0.200 1.200 17 H -0.152 1.152 18 N -0.343 5.343 19 C -0.076 4.076 20 C 0.299 3.701 21 O -0.461 6.461 22 C -0.162 4.162 23 C -0.062 4.062 24 C -0.138 4.138 25 C -0.187 4.187 26 N -0.254 5.254 27 C -0.098 4.098 28 N -0.167 5.167 29 H 0.270 0.730 30 H 0.074 0.926 31 H 0.099 0.901 32 H 0.096 0.904 33 H 0.076 0.924 34 H 0.112 0.888 35 H 0.158 0.842 36 H 0.098 0.902 37 H 0.132 0.868 38 H 0.226 0.774 39 H 0.089 0.911 40 H 0.100 0.900 41 H 0.099 0.901 42 H 0.096 0.904 43 H 0.116 0.884 44 H 0.140 0.860 45 H 0.110 0.890 46 H 0.078 0.922 47 H 0.197 0.803 48 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -21.837 -1.094 11.708 24.802 hybrid contribution 0.966 -0.922 -1.717 2.175 sum -20.872 -2.017 9.991 23.228 Atomic orbital electron populations 1.21997 0.91872 1.03589 1.03019 1.21137 0.95344 0.97113 0.83293 0.90915 1.22444 0.85966 1.00540 0.98717 1.59952 1.10743 1.57571 1.03996 1.21642 0.89308 0.99702 0.96295 1.21041 0.90889 0.81276 0.83383 1.90547 1.72971 1.51634 1.34863 1.42026 1.06139 1.53717 1.21268 1.18986 0.81929 1.37491 1.07432 0.92889 1.26141 0.96198 0.97287 1.01780 1.69810 1.07528 1.44389 1.35792 0.85350 0.79762 0.78798 0.77504 1.18315 1.19958 1.15191 1.47968 1.50474 1.13489 1.22323 1.22054 1.02311 0.79738 1.03448 1.21088 0.77384 0.86608 0.85051 1.90697 1.58631 1.19313 1.77444 1.21641 1.01956 0.99079 0.93526 1.19636 0.99377 0.96700 0.90465 1.21268 0.88461 1.04925 0.99180 1.22369 1.01698 1.04288 0.90316 1.70278 1.04001 1.17705 1.33429 1.25651 0.99605 1.02099 0.82396 1.43446 1.15797 1.42427 1.15041 0.72981 0.92572 0.90106 0.90402 0.92419 0.88757 0.84163 0.90233 0.86822 0.77419 0.91115 0.90016 0.90112 0.90355 0.88447 0.85974 0.88969 0.92166 0.80332 0.74420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 9.19 71.98 0.66 -1.12 16 2 C 0.13 2.64 2.95 44.99 0.13 2.77 16 3 H 0.07 2.01 6.90 -2.39 -0.02 1.99 16 4 C 0.05 1.00 4.98 86.31 0.43 1.43 16 5 N -0.69 -20.42 6.12 -517.95 -3.17 -23.59 16 6 C 0.06 1.86 6.17 85.56 0.53 2.39 16 7 C 0.45 20.09 7.82 87.66 0.69 20.78 16 8 O -0.62 -34.52 15.78 -3.07 -0.05 -34.57 16 9 N -0.59 -27.53 5.09 -306.98 -1.56 -29.09 16 10 C -0.33 -19.22 10.16 84.04 0.85 -18.36 16 11 H 0.05 3.71 7.39 -2.91 -0.02 3.68 16 12 C -0.02 -0.85 5.50 84.93 0.47 -0.39 16 13 N -0.93 -56.10 13.96 21.66 0.30 -55.79 16 14 Si 0.97 38.10 27.74 68.60 1.90 40.01 16 15 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 16 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 17 H -0.23 -7.44 6.52 99.48 0.65 -6.79 16 18 N -0.61 -11.57 1.83 -822.57 -1.51 -13.07 16 19 C 0.07 0.73 9.28 127.77 1.19 1.92 16 20 C 0.51 12.52 7.67 87.66 0.67 13.19 16 21 O -0.58 -19.96 15.31 -3.04 -0.05 -20.01 16 22 C -0.12 -2.18 4.23 29.85 0.13 -2.06 16 23 C -0.02 -0.47 5.06 29.85 0.15 -0.31 16 24 C -0.02 -0.44 6.49 40.95 0.27 -0.17 16 25 C -0.04 -0.84 11.79 83.52 0.98 0.15 16 26 N -0.53 -12.51 11.25 -200.31 -2.25 -14.77 16 27 C 0.19 3.28 13.04 180.26 2.35 5.63 16 28 N -0.56 -9.81 6.15 -186.49 -1.15 -10.96 16 29 H 0.43 5.98 8.96 -92.71 -0.83 5.14 16 30 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.08 0.65 7.67 -2.39 -0.02 0.63 16 33 H 0.06 0.80 6.88 -2.39 -0.02 0.79 16 34 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.34 10.96 7.56 -89.69 -0.68 10.28 16 36 H 0.08 1.82 8.14 -2.38 -0.02 1.80 16 37 H 0.11 2.85 8.14 -2.39 -0.02 2.83 16 38 H 0.39 14.88 5.76 -92.70 -0.53 14.35 16 39 H 0.28 15.29 8.31 -92.71 -0.77 14.52 16 40 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 41 H 0.08 0.76 6.53 -2.39 -0.02 0.75 16 42 H 0.08 0.81 6.44 -2.38 -0.02 0.80 16 43 H 0.10 1.67 7.40 -2.39 -0.02 1.65 16 44 H 0.12 1.52 8.11 -2.39 -0.02 1.50 16 45 H 0.09 1.92 8.10 -2.39 -0.02 1.90 16 46 H 0.06 1.50 8.10 -2.38 -0.02 1.48 16 47 H 0.18 3.09 8.06 -2.91 -0.02 3.07 16 48 H 0.24 2.20 8.06 -2.91 -0.02 2.18 16 Total: -1.00 -89.72 397.37 0.87 -88.85 By element: Atomic # 1 Polarization: 48.25 SS G_CDS: -1.09 Total: 47.15 kcal Atomic # 6 Polarization: 16.35 SS G_CDS: 9.50 Total: 25.85 kcal Atomic # 7 Polarization: -137.94 SS G_CDS: -9.34 Total: -147.28 kcal Atomic # 8 Polarization: -54.48 SS G_CDS: -0.09 Total: -54.58 kcal Atomic # 14 Polarization: 38.10 SS G_CDS: 1.90 Total: 40.01 kcal Total: -89.72 0.87 -88.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568277480.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.584 kcal (2) G-P(sol) polarization free energy of solvation -89.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds