Wall clock time and date at job start Tue Mar 31 2020 20:04:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.53000 * 109.47060 * 120.00319 * 2 1 3 5 5 N 1.46906 * 109.46994 * 175.00273 * 4 2 1 6 6 C 1.46894 * 110.99916 * 180.02562 * 5 4 2 7 7 C 1.50700 * 109.46893 * 179.97438 * 6 5 4 8 8 O 1.21290 * 120.00349 * 359.97438 * 7 6 5 9 9 N 1.34783 * 119.99847 * 179.97438 * 7 6 5 10 10 C 1.37097 * 120.00168 * 179.97438 * 9 7 6 11 11 H 1.08007 * 119.99605 * 359.97438 * 10 9 7 12 12 C 1.38947 * 120.00554 * 180.02562 * 10 9 7 13 13 N 1.31401 * 120.00266 * 180.02562 * 12 10 9 14 14 Si 1.86803 * 119.99397 * 359.97438 * 12 10 9 15 15 H 1.48497 * 109.46893 * 90.00294 * 14 12 10 16 16 H 1.48500 * 109.47106 * 210.00023 * 14 12 10 17 17 H 1.48491 * 109.47432 * 330.00127 * 14 12 10 18 18 N 1.46500 * 109.47007 * 240.00089 * 2 1 3 19 19 C 1.46497 * 119.99968 * 299.99987 * 18 2 1 20 20 C 1.34774 * 119.99744 * 119.99814 * 18 2 1 21 21 O 1.21283 * 120.00281 * 0.02562 * 20 18 2 22 22 C 1.50699 * 119.99876 * 179.97438 * 20 18 2 23 23 C 1.52996 * 109.47469 * 180.02562 * 22 20 18 24 24 C 1.50699 * 109.47469 * 180.02562 * 23 22 20 25 25 C 1.34666 * 126.59360 * 274.68318 * 24 23 22 26 26 N 1.34128 * 108.02493 * 179.87326 * 25 24 23 27 27 C 1.30507 * 109.25239 * 0.40074 * 26 25 24 28 28 N 1.35042 * 108.69768 * 359.75325 * 27 26 25 29 29 H 0.97005 * 126.39163 * 179.97438 * 28 27 26 30 30 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 31 31 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 32 32 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 33 33 H 1.09008 * 109.47142 * 294.99397 * 4 2 1 34 34 H 1.08990 * 109.47170 * 54.99895 * 4 2 1 35 35 H 1.00905 * 110.99404 * 303.95378 * 5 4 2 36 36 H 1.09006 * 109.46743 * 299.99295 * 6 5 4 37 37 H 1.09002 * 109.47580 * 59.99263 * 6 5 4 38 38 H 0.96999 * 120.00238 * 359.97438 * 9 7 6 39 39 H 0.97002 * 120.00365 * 180.02562 * 13 12 10 40 40 H 1.08998 * 109.47466 * 90.00240 * 19 18 2 41 41 H 1.09002 * 109.47260 * 210.00281 * 19 18 2 42 42 H 1.09000 * 109.47562 * 329.99730 * 19 18 2 43 43 H 1.08999 * 109.47401 * 300.00089 * 22 20 18 44 44 H 1.09001 * 109.47492 * 59.99837 * 22 20 18 45 45 H 1.09006 * 109.46874 * 299.99613 * 23 22 20 46 46 H 1.09000 * 109.47515 * 59.99698 * 23 22 20 47 47 H 1.07997 * 125.98711 * 0.02998 * 25 24 23 48 48 H 1.07994 * 125.64859 * 179.73237 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5041 -0.8267 1.1904 6 6 4.0303 -1.5159 2.3760 7 6 5.5316 -1.6054 2.2800 8 8 6.1065 -1.1411 1.3182 9 7 6.2354 -2.2014 3.2629 10 6 7.6011 -2.2833 3.1753 11 1 8.1129 -1.8706 2.3185 12 6 8.3267 -2.8982 4.1883 13 7 9.6357 -2.9762 4.1046 14 14 7.4412 -3.6126 5.6699 15 1 7.0900 -5.0301 5.4005 16 1 8.3277 -3.5397 6.8590 17 1 6.2021 -2.8361 5.9279 18 7 2.0183 -0.6906 -1.1962 19 6 1.6644 -2.0931 -1.4280 20 6 2.7931 -0.0355 -2.0833 21 8 3.0864 1.1255 -1.8912 22 6 3.2959 -0.7461 -3.3135 23 6 4.1462 0.2154 -4.1461 24 6 4.6485 -0.4949 -5.3766 25 6 5.7541 -1.2583 -5.4678 26 7 5.8453 -1.7079 -6.7282 27 6 4.8427 -1.2450 -7.4238 28 7 4.0718 -0.4834 -6.6180 29 1 3.2610 -0.0152 -6.8717 30 1 -0.3634 0.5137 0.8900 31 1 -0.3635 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.7517 -0.1583 2.1370 34 1 1.6054 -1.7198 1.2951 35 1 3.7995 -1.2883 0.3432 36 1 3.7557 -0.9588 3.2718 37 1 3.6094 -2.5200 2.4294 38 1 5.7756 -2.5724 4.0322 39 1 10.1422 -3.4058 4.8116 40 1 0.7375 -2.1444 -1.9994 41 1 2.4628 -2.5819 -1.9864 42 1 1.5295 -2.5969 -0.4709 43 1 3.9016 -1.6022 -3.0166 44 1 2.4484 -1.0891 -3.9070 45 1 3.5408 1.0718 -4.4432 46 1 4.9938 0.5580 -3.5526 47 1 6.4449 -1.4732 -4.6659 48 1 4.6601 -1.4387 -8.4704 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568277481.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:04:49 Heat of formation + Delta-G solvation = -6.624296 kcal Electronic energy + Delta-G solvation = -29053.480910 eV Core-core repulsion = 24951.721198 eV Total energy + Delta-G solvation = -4101.759712 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.20902 -40.24560 -38.45873 -37.07409 -34.71049 -34.17096 -33.79384 -32.54590 -31.85029 -31.59754 -28.87479 -27.76582 -27.12117 -25.18955 -24.70303 -23.09604 -21.77378 -21.40613 -20.76885 -19.39336 -19.04610 -18.31937 -18.22897 -17.19853 -16.49230 -16.25224 -15.89967 -15.45620 -15.11319 -14.85797 -14.77076 -14.31993 -14.16693 -13.92945 -13.77709 -13.56542 -13.31473 -13.23958 -13.07196 -12.83766 -12.75900 -12.68807 -12.36188 -12.26465 -12.13309 -11.90224 -11.75858 -11.57034 -11.37829 -11.18558 -11.02229 -10.58612 -10.20292 -10.12733 -9.95562 -9.82315 -9.55347 -8.88797 -8.54053 -8.52219 -8.17377 -8.10324 -6.28803 -3.80178 1.81741 2.58805 2.77391 2.94207 3.03360 3.03578 3.07073 3.15743 3.76055 4.03025 4.11885 4.29482 4.54548 4.71986 4.73674 4.77748 4.81277 4.84570 4.94099 5.04373 5.06014 5.15907 5.23073 5.23602 5.28331 5.32100 5.40417 5.43621 5.47703 5.55746 5.59624 5.62723 5.78607 5.82334 5.89045 5.93266 6.00676 6.12525 6.40864 6.59472 7.09615 7.15000 7.23098 7.57590 7.60756 7.89036 8.11948 8.16971 8.62121 8.97474 9.44595 9.85139 10.84416 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009494 B = 0.002747 C = 0.002227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2948.531139 B =10190.691065 C =12569.626445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.137 3.863 3 H 0.111 0.889 4 C 0.049 3.951 5 N -0.663 5.663 6 C 0.048 3.952 7 C 0.449 3.551 8 O -0.561 6.561 9 N -0.591 5.591 10 C -0.304 4.304 11 H 0.120 0.880 12 C 0.041 3.959 13 N -0.881 5.881 14 Si 0.879 3.121 15 H -0.272 1.272 16 H -0.277 1.277 17 H -0.270 1.270 18 N -0.613 5.613 19 C 0.073 3.927 20 C 0.519 3.481 21 O -0.528 6.528 22 C -0.133 4.133 23 C -0.029 4.029 24 C -0.021 4.021 25 C -0.019 4.019 26 N -0.493 5.493 27 C 0.177 3.823 28 N -0.569 5.569 29 H 0.417 0.583 30 H 0.069 0.931 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.082 0.918 34 H 0.028 0.972 35 H 0.349 0.651 36 H 0.087 0.913 37 H 0.042 0.958 38 H 0.370 0.630 39 H 0.273 0.727 40 H 0.055 0.945 41 H 0.075 0.925 42 H 0.071 0.929 43 H 0.102 0.898 44 H 0.087 0.913 45 H 0.076 0.924 46 H 0.101 0.899 47 H 0.173 0.827 48 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.383 1.522 -15.199 27.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.033 3.967 3 H 0.129 0.871 4 C -0.081 4.081 5 N -0.296 5.296 6 C -0.085 4.085 7 C 0.235 3.765 8 O -0.442 6.442 9 N -0.231 5.231 10 C -0.433 4.433 11 H 0.137 0.863 12 C -0.162 4.162 13 N -0.521 5.521 14 Si 0.706 3.294 15 H -0.197 1.197 16 H -0.202 1.202 17 H -0.195 1.195 18 N -0.348 5.348 19 C -0.071 4.071 20 C 0.307 3.693 21 O -0.403 6.403 22 C -0.173 4.173 23 C -0.068 4.068 24 C -0.136 4.136 25 C -0.167 4.167 26 N -0.212 5.212 27 C -0.107 4.107 28 N -0.173 5.173 29 H 0.255 0.745 30 H 0.088 0.912 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.101 0.899 34 H 0.046 0.954 35 H 0.169 0.831 36 H 0.105 0.895 37 H 0.060 0.940 38 H 0.202 0.798 39 H 0.084 0.916 40 H 0.074 0.926 41 H 0.093 0.907 42 H 0.090 0.910 43 H 0.120 0.880 44 H 0.105 0.895 45 H 0.094 0.906 46 H 0.119 0.881 47 H 0.190 0.810 48 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -21.825 2.479 -15.689 26.993 hybrid contribution -1.892 -1.076 1.332 2.552 sum -23.717 1.402 -14.357 27.760 Atomic orbital electron populations 1.22085 0.94764 1.02170 1.02587 1.21158 0.93260 0.99055 0.83201 0.87104 1.22343 0.88946 0.98771 0.98078 1.59980 1.07562 1.57268 1.04766 1.21719 0.94931 0.96914 0.94920 1.19707 0.88001 0.83772 0.85046 1.90579 1.70962 1.49858 1.32849 1.42208 1.07885 1.53122 1.19887 1.19436 0.79584 1.35840 1.08415 0.86267 1.25034 0.95431 0.97730 0.97988 1.69618 1.05058 1.43322 1.34150 0.86674 0.79680 0.79889 0.83154 1.19705 1.20175 1.19513 1.47860 1.51525 1.12308 1.23065 1.21802 1.00938 0.81867 1.02448 1.20564 0.77564 0.87019 0.84170 1.90723 1.56435 1.17005 1.76168 1.21687 1.00901 1.00212 0.94534 1.19776 1.00813 0.95905 0.90320 1.21318 0.98322 1.06594 0.87387 1.22267 0.98376 1.00797 0.95213 1.70314 1.22107 1.24251 1.04501 1.24966 0.90570 0.96637 0.98504 1.43312 1.23963 1.40480 1.09553 0.74545 0.91222 0.92188 0.92457 0.89927 0.95378 0.83065 0.89475 0.94019 0.79760 0.91626 0.92613 0.90678 0.91025 0.88025 0.89458 0.90554 0.88050 0.81009 0.77762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.17 9.19 37.16 0.34 -0.82 16 2 C 0.14 1.43 2.95 -67.93 -0.20 1.23 16 3 H 0.11 1.49 6.90 -51.93 -0.36 1.13 16 4 C 0.05 0.55 4.98 -3.82 -0.02 0.53 16 5 N -0.66 -10.50 6.12 -115.06 -0.70 -11.20 16 6 C 0.05 0.80 6.17 -4.98 -0.03 0.77 16 7 C 0.45 10.35 7.82 -10.98 -0.09 10.27 16 8 O -0.56 -15.38 15.78 5.55 0.09 -15.30 16 9 N -0.59 -14.23 5.09 -10.96 -0.06 -14.29 16 10 C -0.30 -8.70 10.16 -14.93 -0.15 -8.85 16 11 H 0.12 3.91 7.39 -52.48 -0.39 3.52 16 12 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 13 N -0.88 -26.02 13.96 55.50 0.77 -25.24 16 14 Si 0.88 19.47 27.74 -169.99 -4.71 14.75 16 15 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 16 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 17 H -0.27 -5.44 6.52 56.52 0.37 -5.07 16 18 N -0.61 -6.19 1.83 -173.94 -0.32 -6.51 16 19 C 0.07 0.51 9.28 59.85 0.56 1.06 16 20 C 0.52 6.26 7.67 -10.99 -0.08 6.17 16 21 O -0.53 -8.51 15.31 5.56 0.09 -8.43 16 22 C -0.13 -1.20 4.23 -27.89 -0.12 -1.32 16 23 C -0.03 -0.28 5.06 -27.89 -0.14 -0.43 16 24 C -0.02 -0.21 6.49 -81.60 -0.53 -0.74 16 25 C -0.02 -0.23 11.79 -17.81 -0.21 -0.44 16 26 N -0.49 -6.19 11.25 -14.67 -0.17 -6.36 16 27 C 0.18 1.51 13.04 -90.37 -1.18 0.33 16 28 N -0.57 -4.15 6.15 -10.30 -0.06 -4.22 16 29 H 0.42 1.63 8.96 -40.82 -0.37 1.27 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.36 7.67 -51.93 -0.40 -0.04 16 33 H 0.08 0.86 8.14 -51.92 -0.42 0.44 16 34 H 0.03 0.27 6.88 -51.93 -0.36 -0.09 16 35 H 0.35 5.85 7.56 -39.29 -0.30 5.55 16 36 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.37 7.78 5.76 -40.82 -0.24 7.55 16 39 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 40 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 41 H 0.07 0.49 6.44 -51.93 -0.33 0.15 16 42 H 0.07 0.49 6.53 -51.93 -0.34 0.15 16 43 H 0.10 0.92 7.40 -51.93 -0.38 0.54 16 44 H 0.09 0.59 8.11 -51.93 -0.42 0.16 16 45 H 0.08 0.70 8.10 -51.93 -0.42 0.28 16 46 H 0.10 1.20 8.10 -51.93 -0.42 0.77 16 47 H 0.17 2.04 8.06 -52.49 -0.42 1.61 16 48 H 0.21 0.90 8.06 -52.49 -0.42 0.48 16 LS Contribution 397.37 15.07 5.99 5.99 Total: -1.00 -38.39 397.37 -8.30 -46.69 By element: Atomic # 1 Polarization: 22.56 SS G_CDS: -7.27 Total: 15.29 kcal Atomic # 6 Polarization: 10.76 SS G_CDS: -1.95 Total: 8.81 kcal Atomic # 7 Polarization: -67.28 SS G_CDS: -0.53 Total: -67.82 kcal Atomic # 8 Polarization: -23.90 SS G_CDS: 0.17 Total: -23.72 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -4.71 Total: 14.75 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -38.39 -8.30 -46.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568277481.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.069 kcal (2) G-P(sol) polarization free energy of solvation -38.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds