Wall clock time and date at job start Tue Mar 31 2020 20:04:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.53000 * 109.47060 * 120.00319 * 2 1 3 5 5 N 1.46906 * 109.46994 * 175.00273 * 4 2 1 6 6 C 1.46894 * 110.99916 * 180.02562 * 5 4 2 7 7 C 1.50700 * 109.46893 * 179.97438 * 6 5 4 8 8 O 1.21290 * 120.00349 * 359.97438 * 7 6 5 9 9 N 1.34783 * 119.99847 * 179.97438 * 7 6 5 10 10 C 1.37097 * 120.00168 * 179.97438 * 9 7 6 11 11 H 1.08007 * 119.99605 * 359.97438 * 10 9 7 12 12 C 1.38947 * 120.00554 * 180.02562 * 10 9 7 13 13 N 1.31401 * 120.00266 * 180.02562 * 12 10 9 14 14 Si 1.86803 * 119.99397 * 359.97438 * 12 10 9 15 15 H 1.48497 * 109.46893 * 90.00294 * 14 12 10 16 16 H 1.48500 * 109.47106 * 210.00023 * 14 12 10 17 17 H 1.48491 * 109.47432 * 330.00127 * 14 12 10 18 18 N 1.46500 * 109.47007 * 240.00089 * 2 1 3 19 19 C 1.46497 * 119.99968 * 299.99987 * 18 2 1 20 20 C 1.34774 * 119.99744 * 119.99814 * 18 2 1 21 21 O 1.21283 * 120.00281 * 0.02562 * 20 18 2 22 22 C 1.50699 * 119.99876 * 179.97438 * 20 18 2 23 23 C 1.52996 * 109.47469 * 180.02562 * 22 20 18 24 24 C 1.50699 * 109.47469 * 180.02562 * 23 22 20 25 25 C 1.34666 * 126.59360 * 274.68318 * 24 23 22 26 26 N 1.34128 * 108.02493 * 179.87326 * 25 24 23 27 27 C 1.30507 * 109.25239 * 0.40074 * 26 25 24 28 28 N 1.35042 * 108.69768 * 359.75325 * 27 26 25 29 29 H 0.97005 * 126.39163 * 179.97438 * 28 27 26 30 30 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 31 31 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 32 32 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 33 33 H 1.09008 * 109.47142 * 294.99397 * 4 2 1 34 34 H 1.08990 * 109.47170 * 54.99895 * 4 2 1 35 35 H 1.00905 * 110.99404 * 303.95378 * 5 4 2 36 36 H 1.09006 * 109.46743 * 299.99295 * 6 5 4 37 37 H 1.09002 * 109.47580 * 59.99263 * 6 5 4 38 38 H 0.96999 * 120.00238 * 359.97438 * 9 7 6 39 39 H 0.97002 * 120.00365 * 180.02562 * 13 12 10 40 40 H 1.08998 * 109.47466 * 90.00240 * 19 18 2 41 41 H 1.09002 * 109.47260 * 210.00281 * 19 18 2 42 42 H 1.09000 * 109.47562 * 329.99730 * 19 18 2 43 43 H 1.08999 * 109.47401 * 300.00089 * 22 20 18 44 44 H 1.09001 * 109.47492 * 59.99837 * 22 20 18 45 45 H 1.09006 * 109.46874 * 299.99613 * 23 22 20 46 46 H 1.09000 * 109.47515 * 59.99698 * 23 22 20 47 47 H 1.07997 * 125.98711 * 0.02998 * 25 24 23 48 48 H 1.07994 * 125.64859 * 179.73237 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5041 -0.8267 1.1904 6 6 4.0303 -1.5159 2.3760 7 6 5.5316 -1.6054 2.2800 8 8 6.1065 -1.1411 1.3182 9 7 6.2354 -2.2014 3.2629 10 6 7.6011 -2.2833 3.1753 11 1 8.1129 -1.8706 2.3185 12 6 8.3267 -2.8982 4.1883 13 7 9.6357 -2.9762 4.1046 14 14 7.4412 -3.6126 5.6699 15 1 7.0900 -5.0301 5.4005 16 1 8.3277 -3.5397 6.8590 17 1 6.2021 -2.8361 5.9279 18 7 2.0183 -0.6906 -1.1962 19 6 1.6644 -2.0931 -1.4280 20 6 2.7931 -0.0355 -2.0833 21 8 3.0864 1.1255 -1.8912 22 6 3.2959 -0.7461 -3.3135 23 6 4.1462 0.2154 -4.1461 24 6 4.6485 -0.4949 -5.3766 25 6 5.7541 -1.2583 -5.4678 26 7 5.8453 -1.7079 -6.7282 27 6 4.8427 -1.2450 -7.4238 28 7 4.0718 -0.4834 -6.6180 29 1 3.2610 -0.0152 -6.8717 30 1 -0.3634 0.5137 0.8900 31 1 -0.3635 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.7517 -0.1583 2.1370 34 1 1.6054 -1.7198 1.2951 35 1 3.7995 -1.2883 0.3432 36 1 3.7557 -0.9588 3.2718 37 1 3.6094 -2.5200 2.4294 38 1 5.7756 -2.5724 4.0322 39 1 10.1422 -3.4058 4.8116 40 1 0.7375 -2.1444 -1.9994 41 1 2.4628 -2.5819 -1.9864 42 1 1.5295 -2.5969 -0.4709 43 1 3.9016 -1.6022 -3.0166 44 1 2.4484 -1.0891 -3.9070 45 1 3.5408 1.0718 -4.4432 46 1 4.9938 0.5580 -3.5526 47 1 6.4449 -1.4732 -4.6659 48 1 4.6601 -1.4387 -8.4704 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568277481.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:04:48 Heat of formation + Delta-G solvation = -36.847640 kcal Electronic energy + Delta-G solvation = -29054.791493 eV Core-core repulsion = 24951.721198 eV Total energy + Delta-G solvation = -4103.070295 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.97079 -41.14064 -40.26862 -38.09625 -36.17249 -35.53055 -34.99072 -33.75858 -33.31705 -32.62794 -29.66365 -29.10423 -27.77112 -26.62791 -25.69938 -24.44222 -22.51854 -22.23623 -21.56656 -21.28705 -20.31561 -19.83959 -18.97623 -18.09090 -17.84728 -17.25931 -17.03575 -16.76953 -16.53726 -15.88037 -15.82590 -15.48284 -15.40758 -15.00742 -14.87658 -14.56644 -14.43953 -14.32296 -14.18604 -14.09432 -13.83521 -13.70507 -13.42372 -13.20377 -13.04804 -12.97599 -12.89498 -12.77254 -12.46153 -12.40691 -12.18041 -11.98572 -11.84963 -11.51922 -10.99323 -10.93808 -10.77073 -10.46842 -10.25885 -9.65735 -9.34959 -9.25766 -8.41622 -6.03038 1.06718 1.29669 1.35287 1.44651 1.68067 1.94829 2.02167 2.20191 2.22931 2.30302 2.71841 3.14592 3.36536 3.53404 3.86682 3.94595 3.95732 4.04471 4.13063 4.17526 4.23322 4.29923 4.34009 4.41320 4.47376 4.52724 4.56608 4.63290 4.69095 4.71382 4.75332 4.80554 4.83738 4.96527 5.06089 5.15046 5.29204 5.32029 5.52055 5.65265 5.75094 5.90172 6.06159 6.34224 6.43320 6.59297 6.59318 6.87606 7.13295 7.24106 7.38811 7.96272 8.76328 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009494 B = 0.002747 C = 0.002227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2948.531139 B =10190.691065 C =12569.626445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.135 3.865 3 H 0.073 0.927 4 C 0.052 3.948 5 N -0.690 5.690 6 C 0.063 3.937 7 C 0.445 3.555 8 O -0.615 6.615 9 N -0.590 5.590 10 C -0.330 4.330 11 H 0.052 0.948 12 C -0.017 4.017 13 N -0.935 5.935 14 Si 0.968 3.032 15 H -0.254 1.254 16 H -0.276 1.276 17 H -0.231 1.231 18 N -0.609 5.609 19 C 0.066 3.934 20 C 0.509 3.491 21 O -0.581 6.581 22 C -0.122 4.122 23 C -0.022 4.022 24 C -0.012 4.012 25 C -0.053 4.053 26 N -0.542 5.542 27 C 0.193 3.807 28 N -0.553 5.553 29 H 0.436 0.564 30 H 0.080 0.920 31 H 0.056 0.944 32 H 0.077 0.923 33 H 0.094 0.906 34 H 0.058 0.942 35 H 0.340 0.660 36 H 0.113 0.887 37 H 0.081 0.919 38 H 0.390 0.610 39 H 0.279 0.721 40 H 0.082 0.918 41 H 0.078 0.922 42 H 0.080 0.920 43 H 0.100 0.900 44 H 0.120 0.880 45 H 0.083 0.917 46 H 0.070 0.930 47 H 0.156 0.844 48 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.239 -0.242 -14.225 31.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.031 3.969 3 H 0.091 0.909 4 C -0.077 4.077 5 N -0.323 5.323 6 C -0.069 4.069 7 C 0.233 3.767 8 O -0.500 6.500 9 N -0.232 5.232 10 C -0.459 4.459 11 H 0.070 0.930 12 C -0.215 4.215 13 N -0.576 5.576 14 Si 0.787 3.213 15 H -0.179 1.179 16 H -0.201 1.201 17 H -0.154 1.154 18 N -0.342 5.342 19 C -0.076 4.076 20 C 0.299 3.701 21 O -0.461 6.461 22 C -0.162 4.162 23 C -0.061 4.061 24 C -0.129 4.129 25 C -0.200 4.200 26 N -0.261 5.261 27 C -0.091 4.091 28 N -0.159 5.159 29 H 0.278 0.722 30 H 0.099 0.901 31 H 0.075 0.925 32 H 0.096 0.904 33 H 0.112 0.888 34 H 0.076 0.924 35 H 0.159 0.841 36 H 0.131 0.869 37 H 0.099 0.901 38 H 0.226 0.774 39 H 0.089 0.911 40 H 0.101 0.899 41 H 0.096 0.904 42 H 0.099 0.901 43 H 0.118 0.882 44 H 0.138 0.862 45 H 0.102 0.898 46 H 0.088 0.912 47 H 0.174 0.826 48 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -26.762 0.700 -14.706 30.545 hybrid contribution -0.338 -0.469 0.885 1.057 sum -27.100 0.231 -13.821 30.422 Atomic orbital electron populations 1.21991 0.91799 1.03589 1.03018 1.21140 0.95368 0.97108 0.83280 0.90915 1.22450 0.85957 1.00555 0.98744 1.59964 1.10759 1.57583 1.04029 1.21638 0.89236 0.99737 0.96273 1.21074 0.90953 0.81261 0.83397 1.90563 1.72986 1.51503 1.34908 1.42017 1.06113 1.53873 1.21166 1.18992 0.82019 1.37452 1.07423 0.93013 1.26162 0.96204 0.97293 1.01852 1.69810 1.07579 1.44307 1.35914 0.85331 0.79416 0.79761 0.76777 1.17872 1.20069 1.15388 1.47965 1.50485 1.13482 1.22307 1.22057 1.02281 0.79748 1.03501 1.21078 0.77321 0.86593 0.85132 1.90697 1.58521 1.19351 1.77495 1.21636 1.01668 0.99309 0.93608 1.19619 0.99897 0.96442 0.90146 1.21093 0.97781 1.05758 0.88245 1.22231 0.99569 1.02724 0.95483 1.70258 1.24563 1.26376 1.04914 1.25750 0.88974 0.94695 0.99691 1.43215 1.24361 1.40027 1.08248 0.72248 0.90121 0.92530 0.90396 0.88767 0.92396 0.84135 0.86860 0.90119 0.77408 0.91117 0.89935 0.90376 0.90129 0.88220 0.86169 0.89833 0.91160 0.82620 0.73586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.19 71.98 0.66 -1.05 16 2 C 0.13 2.63 2.95 44.99 0.13 2.76 16 3 H 0.07 2.01 6.90 -2.39 -0.02 1.99 16 4 C 0.05 1.01 4.98 86.30 0.43 1.44 16 5 N -0.69 -20.99 6.12 -517.93 -3.17 -24.16 16 6 C 0.06 1.94 6.17 85.56 0.53 2.46 16 7 C 0.45 20.63 7.82 87.66 0.69 21.32 16 8 O -0.62 -35.57 15.78 -3.06 -0.05 -35.62 16 9 N -0.59 -28.27 5.09 -306.97 -1.56 -29.83 16 10 C -0.33 -19.73 10.16 84.04 0.85 -18.88 16 11 H 0.05 3.71 7.39 -2.91 -0.02 3.69 16 12 C -0.02 -0.94 5.50 84.93 0.47 -0.47 16 13 N -0.94 -57.40 13.96 21.66 0.30 -57.10 16 14 Si 0.97 38.99 27.74 68.60 1.90 40.89 16 15 H -0.25 -9.59 7.11 99.48 0.71 -8.88 16 16 H -0.28 -11.06 7.11 99.48 0.71 -10.35 16 17 H -0.23 -7.78 6.52 99.48 0.65 -7.14 16 18 N -0.61 -11.55 1.83 -822.60 -1.51 -13.06 16 19 C 0.07 0.73 9.28 127.77 1.19 1.91 16 20 C 0.51 12.52 7.67 87.66 0.67 13.19 16 21 O -0.58 -19.94 15.31 -3.04 -0.05 -19.99 16 22 C -0.12 -2.19 4.23 29.85 0.13 -2.07 16 23 C -0.02 -0.45 5.06 29.85 0.15 -0.30 16 24 C -0.01 -0.24 6.49 40.95 0.27 0.02 16 25 C -0.05 -1.38 11.79 83.52 0.98 -0.40 16 26 N -0.54 -13.82 11.25 -200.32 -2.25 -16.08 16 27 C 0.19 2.97 13.04 180.26 2.35 5.32 16 28 N -0.55 -7.19 6.15 -186.50 -1.15 -8.33 16 29 H 0.44 2.29 8.96 -92.70 -0.83 1.45 16 30 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.08 0.62 7.67 -2.39 -0.02 0.60 16 33 H 0.09 1.63 8.14 -2.38 -0.02 1.61 16 34 H 0.06 0.82 6.88 -2.39 -0.02 0.80 16 35 H 0.34 11.32 7.56 -89.69 -0.68 10.64 16 36 H 0.11 2.93 8.14 -2.38 -0.02 2.91 16 37 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.39 15.29 5.76 -92.71 -0.53 14.75 16 39 H 0.28 15.61 8.31 -92.71 -0.77 14.84 16 40 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 41 H 0.08 0.84 6.44 -2.39 -0.02 0.82 16 42 H 0.08 0.77 6.53 -2.39 -0.02 0.76 16 43 H 0.10 1.85 7.40 -2.39 -0.02 1.84 16 44 H 0.12 1.34 8.11 -2.39 -0.02 1.32 16 45 H 0.08 1.58 8.10 -2.38 -0.02 1.56 16 46 H 0.07 1.89 8.10 -2.39 -0.02 1.87 16 47 H 0.16 4.29 8.06 -2.91 -0.02 4.27 16 48 H 0.25 1.34 8.06 -2.91 -0.02 1.32 16 Total: -1.00 -94.33 397.37 0.87 -93.46 By element: Atomic # 1 Polarization: 45.64 SS G_CDS: -1.09 Total: 44.55 kcal Atomic # 6 Polarization: 15.78 SS G_CDS: 9.50 Total: 25.28 kcal Atomic # 7 Polarization: -139.22 SS G_CDS: -9.34 Total: -148.56 kcal Atomic # 8 Polarization: -55.51 SS G_CDS: -0.09 Total: -55.61 kcal Atomic # 14 Polarization: 38.99 SS G_CDS: 1.90 Total: 40.89 kcal Total: -94.33 0.87 -93.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568277481.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.609 kcal (2) G-P(sol) polarization free energy of solvation -94.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds