Wall clock time and date at job start Tue Mar 31 2020 20:24:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46500 * 109.46757 * 2 1 4 4 C 1.46502 * 119.99830 * 262.17522 * 3 2 1 5 5 C 1.53005 * 109.46893 * 270.00096 * 4 3 2 6 6 N 1.46903 * 109.46983 * 180.02562 * 5 4 3 7 7 C 1.46903 * 110.99779 * 180.02562 * 6 5 4 8 8 C 1.50700 * 109.46651 * 179.97438 * 7 6 5 9 9 O 1.21290 * 120.00471 * 359.97438 * 8 7 6 10 10 N 1.34778 * 119.99678 * 179.97438 * 8 7 6 11 11 C 1.37092 * 120.00095 * 180.02562 * 10 8 7 12 12 H 1.08002 * 120.00055 * 359.97438 * 11 10 8 13 13 C 1.38955 * 120.00086 * 179.97438 * 11 10 8 14 14 N 1.31417 * 120.00037 * 179.97438 * 13 11 10 15 15 Si 1.86796 * 119.99988 * 359.97438 * 13 11 10 16 16 H 1.48505 * 109.47064 * 90.00028 * 15 13 11 17 17 H 1.48501 * 109.47351 * 209.99918 * 15 13 11 18 18 H 1.48500 * 109.47382 * 330.00057 * 15 13 11 19 19 C 1.34773 * 120.00208 * 82.17590 * 3 2 1 20 20 O 1.21621 * 120.00233 * 182.06872 * 19 3 2 21 21 C 1.47164 * 119.99832 * 2.06582 * 19 3 2 22 22 C 1.38406 * 126.88439 * 350.03841 * 21 19 3 23 23 C 1.39671 * 105.36043 * 180.02562 * 22 21 19 24 24 N 1.30860 * 107.86362 * 0.24065 * 23 22 21 25 25 N 1.28450 * 110.92311 * 359.59128 * 24 23 22 26 26 C 1.46504 * 125.18927 * 180.17021 * 25 24 23 27 27 C 1.53000 * 109.46876 * 274.90851 * 26 25 24 28 28 H 1.09002 * 109.46905 * 296.19509 * 1 2 3 29 29 H 1.08996 * 109.47250 * 56.19932 * 1 2 3 30 30 H 1.09006 * 109.46683 * 176.20376 * 1 2 3 31 31 H 1.09005 * 109.46741 * 240.00322 * 2 1 3 32 32 H 1.08996 * 109.47154 * 119.99794 * 2 1 3 33 33 H 1.08994 * 109.47365 * 30.00002 * 4 3 2 34 34 H 1.09004 * 109.47106 * 150.00375 * 4 3 2 35 35 H 1.09007 * 109.46885 * 299.99903 * 5 4 3 36 36 H 1.08996 * 109.47274 * 60.00229 * 5 4 3 37 37 H 1.00894 * 111.00177 * 56.04467 * 6 5 4 38 38 H 1.09005 * 109.46554 * 299.99520 * 7 6 5 39 39 H 1.08997 * 109.47236 * 59.99672 * 7 6 5 40 40 H 0.97005 * 119.99858 * 359.97438 * 10 8 7 41 41 H 0.96991 * 119.99857 * 179.97438 * 14 13 11 42 42 H 1.08005 * 127.31922 * 0.02562 * 22 21 19 43 43 H 1.08000 * 126.06923 * 179.97438 * 23 22 21 44 44 H 1.09008 * 109.47158 * 34.91047 * 26 25 24 45 45 H 1.09003 * 109.47157 * 154.90819 * 26 25 24 46 46 H 1.09005 * 109.46758 * 184.99425 * 27 26 25 47 47 H 1.08993 * 109.47072 * 304.99532 * 27 26 25 48 48 H 1.09000 * 109.47213 * 64.99927 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.4253 2.0143 -1.2570 5 6 3.9144 1.7583 -1.4981 6 7 4.3226 2.3936 -2.7582 7 6 5.7497 2.1677 -3.0234 8 6 6.1306 2.8319 -4.3214 9 8 5.2954 3.4338 -4.9627 10 7 7.3995 2.7571 -4.7696 11 6 7.7462 3.3618 -5.9501 12 1 7.0025 3.8978 -6.5212 13 6 9.0545 3.2852 -6.4120 14 7 9.3867 3.8644 -7.5439 15 14 10.3410 2.3588 -5.4240 16 1 10.3682 0.9381 -5.8557 17 1 11.6748 2.9708 -5.6511 18 1 10.0027 2.4309 -3.9799 19 6 2.0931 2.0696 1.1563 20 8 2.4627 3.2283 1.1514 21 6 1.7275 1.4191 2.4247 22 6 1.1137 0.1885 2.5805 23 6 0.9789 0.0142 3.9598 24 7 1.4754 1.0722 4.5485 25 7 1.9253 1.9093 3.6843 26 6 2.5502 3.1960 4.0010 27 6 1.4650 4.2597 4.1794 28 1 -0.3633 0.4537 0.9221 29 1 -0.3633 0.5717 -0.8539 30 1 -0.3633 -1.0255 -0.0680 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8900 33 1 1.8466 1.5941 -2.0794 34 1 2.2461 3.0879 -1.1978 35 1 4.4931 2.1786 -0.6755 36 1 4.0936 0.6848 -1.5573 37 1 4.1071 3.3792 -2.7527 38 1 6.3414 2.5902 -2.2112 39 1 5.9412 1.0970 -3.0937 40 1 8.0676 2.2761 -4.2565 41 1 10.3000 3.8112 -7.8661 42 1 0.8046 -0.4924 1.8012 43 1 0.5389 -0.8400 4.4528 44 1 3.1240 3.1040 4.9233 45 1 3.2144 3.4874 3.1874 46 1 1.9317 5.2336 4.3271 47 1 0.8357 4.2894 3.2900 48 1 0.8546 4.0138 5.0484 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568737392.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:39 Heat of formation + Delta-G solvation = 43.353396 kcal Electronic energy + Delta-G solvation = -28947.033649 eV Core-core repulsion = 24847.441132 eV Total energy + Delta-G solvation = -4099.592517 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.98524 -40.08467 -38.48062 -37.00624 -35.69013 -34.66037 -33.92175 -32.34937 -31.65194 -30.76736 -30.05395 -29.16686 -26.35152 -24.61724 -24.03133 -23.93610 -22.84412 -22.40322 -21.20817 -19.62756 -19.34155 -18.34717 -17.76164 -17.07226 -16.51311 -16.33448 -16.08069 -15.63945 -15.41119 -15.13429 -14.94002 -14.75181 -14.55467 -13.97184 -13.91052 -13.59504 -13.48684 -13.18127 -13.07857 -12.93292 -12.74783 -12.49966 -12.41160 -12.40029 -12.20217 -11.91976 -11.68712 -11.65840 -11.63523 -11.25757 -11.11412 -10.91343 -10.59910 -10.32676 -9.97878 -9.58959 -9.57621 -9.31604 -9.11200 -8.59928 -8.21977 -8.16846 -6.31255 -3.82656 0.91041 1.95338 2.26579 2.65050 2.82462 3.02393 3.06606 3.14783 3.73496 3.91967 4.09618 4.14683 4.18729 4.49189 4.59280 4.63079 4.70921 4.78094 4.82126 4.88919 4.92845 4.97439 5.06005 5.10167 5.22174 5.22801 5.28644 5.33409 5.39620 5.42236 5.47916 5.58405 5.69164 5.70477 5.76836 5.79468 5.83427 5.92158 6.08832 6.16532 6.38082 6.90686 7.01921 7.51405 7.57948 7.64508 7.77810 8.14202 8.59479 8.94699 9.42140 9.82200 10.81858 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.018251 B = 0.002008 C = 0.001943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.775703 B =13937.693069 C =14405.723977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.079 3.921 3 N -0.592 5.592 4 C 0.119 3.881 5 C 0.046 3.954 6 N -0.666 5.666 7 C 0.050 3.950 8 C 0.450 3.550 9 O -0.564 6.564 10 N -0.591 5.591 11 C -0.305 4.305 12 H 0.120 0.880 13 C 0.041 3.959 14 N -0.881 5.881 15 Si 0.880 3.120 16 H -0.270 1.270 17 H -0.277 1.277 18 H -0.270 1.270 19 C 0.588 3.412 20 O -0.536 6.536 21 C -0.035 4.035 22 C -0.215 4.215 23 C -0.008 4.008 24 N -0.277 5.277 25 N -0.253 5.253 26 C 0.111 3.889 27 C -0.162 4.162 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.099 0.901 33 H 0.094 0.906 34 H 0.088 0.912 35 H 0.030 0.970 36 H 0.072 0.928 37 H 0.353 0.647 38 H 0.045 0.955 39 H 0.087 0.913 40 H 0.370 0.630 41 H 0.273 0.727 42 H 0.188 0.812 43 H 0.186 0.814 44 H 0.097 0.903 45 H 0.116 0.884 46 H 0.081 0.919 47 H 0.065 0.935 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.722 -10.483 25.186 31.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.043 4.043 3 N -0.324 5.324 4 C -0.004 4.004 5 C -0.085 4.085 6 N -0.299 5.299 7 C -0.083 4.083 8 C 0.236 3.764 9 O -0.446 6.446 10 N -0.230 5.230 11 C -0.433 4.433 12 H 0.137 0.863 13 C -0.162 4.162 14 N -0.521 5.521 15 Si 0.707 3.293 16 H -0.196 1.196 17 H -0.202 1.202 18 H -0.195 1.195 19 C 0.375 3.625 20 O -0.413 6.413 21 C -0.163 4.163 22 C -0.243 4.243 23 C -0.184 4.184 24 N -0.110 5.110 25 N -0.042 5.042 26 C -0.008 4.008 27 C -0.220 4.220 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.093 0.907 31 H 0.108 0.892 32 H 0.116 0.884 33 H 0.112 0.888 34 H 0.106 0.894 35 H 0.049 0.951 36 H 0.091 0.909 37 H 0.172 0.828 38 H 0.063 0.937 39 H 0.105 0.895 40 H 0.203 0.797 41 H 0.084 0.916 42 H 0.204 0.796 43 H 0.203 0.797 44 H 0.115 0.885 45 H 0.134 0.866 46 H 0.100 0.900 47 H 0.084 0.916 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -16.857 -9.292 25.251 31.751 hybrid contribution 1.473 -0.610 0.553 1.687 sum -15.384 -9.901 25.804 31.631 Atomic orbital electron populations 1.22478 0.95357 1.03081 1.03557 1.22317 0.94907 0.82259 1.04834 1.47589 1.63819 1.14348 1.06645 1.21493 0.95133 0.99824 0.83921 1.22271 0.95179 1.00164 0.90877 1.59992 1.17110 1.20404 1.32388 1.21690 0.88760 1.01391 0.96459 1.19681 0.83087 0.85772 0.87875 1.90565 1.49296 1.45745 1.58975 1.42205 1.08655 1.49773 1.22373 1.19435 0.96622 1.30431 0.96851 0.86251 1.25047 0.97201 0.97644 0.96327 1.69622 1.19644 1.43081 1.19764 0.86665 0.82104 0.80621 0.79950 1.19588 1.20184 1.19548 1.16980 0.77733 0.85354 0.82397 1.90807 1.47703 1.16263 1.86540 1.21372 1.09966 0.97368 0.87630 1.23377 1.05639 0.97001 0.98268 1.23660 1.04364 0.97896 0.92479 1.73202 1.14627 1.01749 1.21432 1.45905 1.40744 1.15563 1.01948 1.22206 0.96330 0.77934 1.04361 1.22061 0.98821 0.98203 1.02880 0.91211 0.91572 0.90739 0.89218 0.88366 0.88783 0.89358 0.95139 0.90933 0.82758 0.93717 0.89453 0.79691 0.91612 0.79579 0.79725 0.88463 0.86635 0.89984 0.91608 0.91868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -0.93 8.81 37.16 0.33 -0.60 16 2 C 0.08 0.47 5.64 -4.04 -0.02 0.45 16 3 N -0.59 -5.40 2.49 -175.05 -0.44 -5.84 16 4 C 0.12 1.23 5.65 -4.04 -0.02 1.20 16 5 C 0.05 0.54 6.01 -3.82 -0.02 0.52 16 6 N -0.67 -10.22 6.12 -115.05 -0.70 -10.93 16 7 C 0.05 0.83 6.17 -4.97 -0.03 0.80 16 8 C 0.45 10.27 7.82 -10.98 -0.09 10.19 16 9 O -0.56 -15.19 15.78 5.55 0.09 -15.11 16 10 N -0.59 -14.15 5.09 -10.96 -0.06 -14.21 16 11 C -0.30 -8.66 10.16 -14.93 -0.15 -8.81 16 12 H 0.12 3.88 7.39 -52.49 -0.39 3.49 16 13 C 0.04 1.12 5.50 -17.46 -0.10 1.03 16 14 N -0.88 -25.82 13.96 55.50 0.77 -25.04 16 15 Si 0.88 19.43 27.74 -169.99 -4.71 14.71 16 16 H -0.27 -5.84 7.11 56.52 0.40 -5.43 16 17 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 18 H -0.27 -5.44 6.52 56.52 0.37 -5.07 16 19 C 0.59 6.58 7.56 -12.64 -0.10 6.49 16 20 O -0.54 -7.41 14.32 5.26 0.08 -7.34 16 21 C -0.03 -0.35 6.76 -82.06 -0.55 -0.91 16 22 C -0.21 -1.62 7.37 -38.98 -0.29 -1.91 16 23 C -0.01 -0.07 12.03 -17.43 -0.21 -0.28 16 24 N -0.28 -2.84 11.90 30.59 0.36 -2.47 16 25 N -0.25 -2.60 3.35 -57.13 -0.19 -2.80 16 26 C 0.11 0.96 6.56 -4.04 -0.03 0.94 16 27 C -0.16 -1.25 10.24 37.16 0.38 -0.87 16 28 H 0.07 0.41 5.98 -51.93 -0.31 0.10 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.23 8.14 -51.93 -0.42 -0.20 16 31 H 0.09 0.45 8.01 -51.93 -0.42 0.04 16 32 H 0.10 0.51 4.81 -51.93 -0.25 0.26 16 33 H 0.09 0.88 8.07 -51.93 -0.42 0.46 16 34 H 0.09 1.04 7.39 -51.93 -0.38 0.66 16 35 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.35 5.72 8.43 -39.29 -0.33 5.39 16 38 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 40 H 0.37 7.78 5.76 -40.82 -0.24 7.55 16 41 H 0.27 7.38 8.31 -40.82 -0.34 7.05 16 42 H 0.19 0.91 3.40 -52.48 -0.18 0.73 16 43 H 0.19 0.84 8.06 -52.49 -0.42 0.42 16 44 H 0.10 0.67 8.14 -51.92 -0.42 0.25 16 45 H 0.12 1.11 6.29 -51.93 -0.33 0.79 16 46 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 391.08 15.07 5.89 5.89 Total: -1.00 -35.55 391.08 -6.86 -42.41 By element: Atomic # 1 Polarization: 19.54 SS G_CDS: -7.06 Total: 12.48 kcal Atomic # 6 Polarization: 9.13 SS G_CDS: -0.90 Total: 8.23 kcal Atomic # 7 Polarization: -61.04 SS G_CDS: -0.25 Total: -61.29 kcal Atomic # 8 Polarization: -22.61 SS G_CDS: 0.16 Total: -22.44 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -4.71 Total: 14.71 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -35.55 -6.86 -42.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568737392.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.767 kcal (2) G-P(sol) polarization free energy of solvation -35.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds