Wall clock time and date at job start Tue Mar 31 2020 20:24:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46500 * 109.46757 * 2 1 4 4 C 1.46502 * 119.99830 * 262.17522 * 3 2 1 5 5 C 1.53005 * 109.46893 * 270.00096 * 4 3 2 6 6 N 1.46903 * 109.46983 * 180.02562 * 5 4 3 7 7 C 1.46903 * 110.99779 * 180.02562 * 6 5 4 8 8 C 1.50700 * 109.46651 * 179.97438 * 7 6 5 9 9 O 1.21290 * 120.00471 * 359.97438 * 8 7 6 10 10 N 1.34778 * 119.99678 * 179.97438 * 8 7 6 11 11 C 1.37092 * 120.00095 * 180.02562 * 10 8 7 12 12 H 1.08002 * 120.00055 * 359.97438 * 11 10 8 13 13 C 1.38955 * 120.00086 * 179.97438 * 11 10 8 14 14 N 1.31417 * 120.00037 * 179.97438 * 13 11 10 15 15 Si 1.86796 * 119.99988 * 359.97438 * 13 11 10 16 16 H 1.48505 * 109.47064 * 90.00028 * 15 13 11 17 17 H 1.48501 * 109.47351 * 209.99918 * 15 13 11 18 18 H 1.48500 * 109.47382 * 330.00057 * 15 13 11 19 19 C 1.34773 * 120.00208 * 82.17590 * 3 2 1 20 20 O 1.21621 * 120.00233 * 182.06872 * 19 3 2 21 21 C 1.47164 * 119.99832 * 2.06582 * 19 3 2 22 22 C 1.38406 * 126.88439 * 350.03841 * 21 19 3 23 23 C 1.39671 * 105.36043 * 180.02562 * 22 21 19 24 24 N 1.30860 * 107.86362 * 0.24065 * 23 22 21 25 25 N 1.28450 * 110.92311 * 359.59128 * 24 23 22 26 26 C 1.46504 * 125.18927 * 180.17021 * 25 24 23 27 27 C 1.53000 * 109.46876 * 274.90851 * 26 25 24 28 28 H 1.09002 * 109.46905 * 296.19509 * 1 2 3 29 29 H 1.08996 * 109.47250 * 56.19932 * 1 2 3 30 30 H 1.09006 * 109.46683 * 176.20376 * 1 2 3 31 31 H 1.09005 * 109.46741 * 240.00322 * 2 1 3 32 32 H 1.08996 * 109.47154 * 119.99794 * 2 1 3 33 33 H 1.08994 * 109.47365 * 30.00002 * 4 3 2 34 34 H 1.09004 * 109.47106 * 150.00375 * 4 3 2 35 35 H 1.09007 * 109.46885 * 299.99903 * 5 4 3 36 36 H 1.08996 * 109.47274 * 60.00229 * 5 4 3 37 37 H 1.00894 * 111.00177 * 56.04467 * 6 5 4 38 38 H 1.09005 * 109.46554 * 299.99520 * 7 6 5 39 39 H 1.08997 * 109.47236 * 59.99672 * 7 6 5 40 40 H 0.97005 * 119.99858 * 359.97438 * 10 8 7 41 41 H 0.96991 * 119.99857 * 179.97438 * 14 13 11 42 42 H 1.08005 * 127.31922 * 0.02562 * 22 21 19 43 43 H 1.08000 * 126.06923 * 179.97438 * 23 22 21 44 44 H 1.09008 * 109.47158 * 34.91047 * 26 25 24 45 45 H 1.09003 * 109.47157 * 154.90819 * 26 25 24 46 46 H 1.09005 * 109.46758 * 184.99425 * 27 26 25 47 47 H 1.08993 * 109.47072 * 304.99532 * 27 26 25 48 48 H 1.09000 * 109.47213 * 64.99927 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.4253 2.0143 -1.2570 5 6 3.9144 1.7583 -1.4981 6 7 4.3226 2.3936 -2.7582 7 6 5.7497 2.1677 -3.0234 8 6 6.1306 2.8319 -4.3214 9 8 5.2954 3.4338 -4.9627 10 7 7.3995 2.7571 -4.7696 11 6 7.7462 3.3618 -5.9501 12 1 7.0025 3.8978 -6.5212 13 6 9.0545 3.2852 -6.4120 14 7 9.3867 3.8644 -7.5439 15 14 10.3410 2.3588 -5.4240 16 1 10.3682 0.9381 -5.8557 17 1 11.6748 2.9708 -5.6511 18 1 10.0027 2.4309 -3.9799 19 6 2.0931 2.0696 1.1563 20 8 2.4627 3.2283 1.1514 21 6 1.7275 1.4191 2.4247 22 6 1.1137 0.1885 2.5805 23 6 0.9789 0.0142 3.9598 24 7 1.4754 1.0722 4.5485 25 7 1.9253 1.9093 3.6843 26 6 2.5502 3.1960 4.0010 27 6 1.4650 4.2597 4.1794 28 1 -0.3633 0.4537 0.9221 29 1 -0.3633 0.5717 -0.8539 30 1 -0.3633 -1.0255 -0.0680 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8900 33 1 1.8466 1.5941 -2.0794 34 1 2.2461 3.0879 -1.1978 35 1 4.4931 2.1786 -0.6755 36 1 4.0936 0.6848 -1.5573 37 1 4.1071 3.3792 -2.7527 38 1 6.3414 2.5902 -2.2112 39 1 5.9412 1.0970 -3.0937 40 1 8.0676 2.2761 -4.2565 41 1 10.3000 3.8112 -7.8661 42 1 0.8046 -0.4924 1.8012 43 1 0.5389 -0.8400 4.4528 44 1 3.1240 3.1040 4.9233 45 1 3.2144 3.4874 3.1874 46 1 1.9317 5.2336 4.3271 47 1 0.8357 4.2894 3.2900 48 1 0.8546 4.0138 5.0484 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568737392.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:38 Heat of formation + Delta-G solvation = 15.587775 kcal Electronic energy + Delta-G solvation = -28948.237657 eV Core-core repulsion = 24847.441132 eV Total energy + Delta-G solvation = -4100.796525 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.64002 -40.87692 -40.29461 -37.84281 -36.82669 -35.91252 -35.31631 -33.77367 -33.11999 -31.39329 -30.71450 -30.18917 -27.83499 -25.77827 -25.04147 -24.57576 -23.79342 -23.13110 -21.97080 -21.30248 -20.39453 -20.13032 -18.46473 -17.90279 -17.78088 -17.14835 -17.07819 -17.02316 -16.67962 -16.03773 -15.95236 -15.65292 -15.48548 -15.26083 -15.14144 -14.80371 -14.70837 -14.25280 -14.18095 -13.87077 -13.70867 -13.62184 -13.44982 -13.29217 -13.00847 -12.98075 -12.76697 -12.66488 -12.42222 -12.31000 -12.15128 -12.08854 -11.98842 -11.53963 -11.52307 -11.14732 -10.49629 -10.30006 -10.26090 -9.93773 -9.81544 -9.44316 -8.42082 -6.03173 0.19745 1.28295 1.29845 1.35067 1.44027 1.65416 1.92851 1.94545 2.07727 2.22361 2.74650 3.13722 3.25277 3.46297 3.54368 3.95429 3.96529 4.03079 4.05499 4.08794 4.13859 4.19531 4.25515 4.34049 4.41232 4.47430 4.48674 4.55302 4.60131 4.64379 4.75464 4.77475 4.83540 4.86733 4.96711 5.03955 5.05388 5.40168 5.43551 5.51670 5.56740 5.74242 5.85319 5.98067 6.18454 6.26114 6.58134 6.86589 6.89517 7.09564 7.37946 7.94108 8.75489 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.018251 B = 0.002008 C = 0.001943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.775703 B =13937.693069 C =14405.723977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.073 3.927 3 N -0.585 5.585 4 C 0.124 3.876 5 C 0.056 3.944 6 N -0.679 5.679 7 C 0.063 3.937 8 C 0.448 3.552 9 O -0.613 6.613 10 N -0.590 5.590 11 C -0.329 4.329 12 H 0.056 0.944 13 C -0.016 4.016 14 N -0.933 5.933 15 Si 0.966 3.034 16 H -0.255 1.255 17 H -0.275 1.275 18 H -0.233 1.233 19 C 0.582 3.418 20 O -0.574 6.574 21 C -0.059 4.059 22 C -0.197 4.197 23 C -0.009 4.009 24 N -0.301 5.301 25 N -0.266 5.266 26 C 0.109 3.891 27 C -0.153 4.153 28 H 0.060 0.940 29 H 0.054 0.946 30 H 0.101 0.899 31 H 0.106 0.894 32 H 0.111 0.889 33 H 0.107 0.893 34 H 0.066 0.934 35 H 0.022 0.978 36 H 0.093 0.907 37 H 0.344 0.656 38 H 0.070 0.930 39 H 0.120 0.880 40 H 0.390 0.610 41 H 0.279 0.721 42 H 0.214 0.786 43 H 0.218 0.782 44 H 0.112 0.888 45 H 0.101 0.899 46 H 0.096 0.904 47 H 0.043 0.957 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.348 -14.082 27.944 35.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.048 4.048 3 N -0.317 5.317 4 C 0.001 3.999 5 C -0.074 4.074 6 N -0.311 5.311 7 C -0.069 4.069 8 C 0.236 3.764 9 O -0.498 6.498 10 N -0.232 5.232 11 C -0.458 4.458 12 H 0.074 0.926 13 C -0.215 4.215 14 N -0.574 5.574 15 Si 0.786 3.214 16 H -0.179 1.179 17 H -0.200 1.200 18 H -0.156 1.156 19 C 0.370 3.630 20 O -0.454 6.454 21 C -0.187 4.187 22 C -0.225 4.225 23 C -0.184 4.184 24 N -0.133 5.133 25 N -0.055 5.055 26 C -0.011 4.011 27 C -0.211 4.211 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.120 0.880 31 H 0.124 0.876 32 H 0.128 0.872 33 H 0.125 0.875 34 H 0.085 0.915 35 H 0.041 0.959 36 H 0.112 0.888 37 H 0.162 0.838 38 H 0.088 0.912 39 H 0.138 0.862 40 H 0.225 0.775 41 H 0.089 0.911 42 H 0.231 0.769 43 H 0.235 0.765 44 H 0.130 0.870 45 H 0.119 0.881 46 H 0.115 0.885 47 H 0.062 0.938 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -16.510 -12.934 28.031 35.008 hybrid contribution 1.204 0.529 -0.364 1.365 sum -15.306 -12.405 27.667 33.965 Atomic orbital electron populations 1.22451 0.94499 1.04522 1.02612 1.22603 0.95569 0.80385 1.06209 1.47656 1.63067 1.15425 1.05519 1.21344 0.94660 0.98960 0.84909 1.22265 0.95623 1.00754 0.88786 1.60017 1.16406 1.20075 1.34598 1.21623 0.89861 1.02466 0.92949 1.20926 0.81997 0.84217 0.89228 1.90545 1.50652 1.47564 1.60993 1.42027 1.09778 1.50066 1.21330 1.19011 0.96207 1.31852 0.98757 0.92616 1.26136 0.99587 0.98260 0.97484 1.69804 1.20759 1.44738 1.22101 0.85353 0.77365 0.78973 0.79753 1.17922 1.20046 1.15641 1.17261 0.77353 0.85069 0.83286 1.90782 1.49567 1.17915 1.87130 1.21459 1.11530 0.98520 0.87199 1.23736 1.03773 0.96062 0.98900 1.24305 1.03347 0.98017 0.92754 1.73187 1.15457 1.02592 1.22107 1.46032 1.41386 1.15976 1.02096 1.22235 0.96461 0.77996 1.04407 1.21992 0.98429 0.98889 1.01802 0.92097 0.92641 0.88014 0.87590 0.87174 0.87527 0.91517 0.95933 0.88847 0.83810 0.91175 0.86226 0.77453 0.91114 0.76945 0.76515 0.86988 0.88077 0.88492 0.93776 0.91577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.29 8.81 71.98 0.63 -0.65 16 2 C 0.07 0.64 5.64 86.38 0.49 1.13 16 3 N -0.59 -9.84 2.49 -825.98 -2.06 -11.90 16 4 C 0.12 2.44 5.65 86.38 0.49 2.93 16 5 C 0.06 1.20 6.01 86.30 0.52 1.72 16 6 N -0.68 -19.89 6.12 -517.90 -3.17 -23.07 16 7 C 0.06 1.95 6.17 85.56 0.53 2.48 16 8 C 0.45 20.38 7.82 87.66 0.69 21.06 16 9 O -0.61 -34.23 15.78 -3.06 -0.05 -34.28 16 10 N -0.59 -28.00 5.09 -306.98 -1.56 -29.56 16 11 C -0.33 -19.40 10.16 84.04 0.85 -18.54 16 12 H 0.06 3.91 7.39 -2.91 -0.02 3.89 16 13 C -0.02 -0.89 5.50 84.93 0.47 -0.43 16 14 N -0.93 -56.48 13.96 21.67 0.30 -56.17 16 15 Si 0.97 38.82 27.74 68.60 1.90 40.73 16 16 H -0.25 -9.64 7.11 99.48 0.71 -8.94 16 17 H -0.28 -11.01 7.11 99.48 0.71 -10.30 16 18 H -0.23 -7.91 6.52 99.48 0.65 -7.27 16 19 C 0.58 12.85 7.56 86.59 0.65 13.50 16 20 O -0.57 -16.46 14.32 -4.10 -0.06 -16.52 16 21 C -0.06 -1.13 6.76 40.79 0.28 -0.86 16 22 C -0.20 -2.48 7.37 22.66 0.17 -2.31 16 23 C -0.01 -0.12 12.03 85.18 1.02 0.91 16 24 N -0.30 -5.74 11.90 -57.14 -0.68 -6.42 16 25 N -0.27 -5.34 3.35 -334.67 -1.12 -6.46 16 26 C 0.11 1.91 6.56 86.38 0.57 2.47 16 27 C -0.15 -2.42 10.24 71.98 0.74 -1.69 16 28 H 0.06 0.56 5.98 -2.39 -0.01 0.55 16 29 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.10 0.20 8.14 -2.38 -0.02 0.18 16 31 H 0.11 0.64 8.01 -2.38 -0.02 0.62 16 32 H 0.11 0.73 4.81 -2.39 -0.01 0.72 16 33 H 0.11 1.83 8.07 -2.39 -0.02 1.81 16 34 H 0.07 1.62 7.39 -2.38 -0.02 1.60 16 35 H 0.02 0.53 8.14 -2.38 -0.02 0.51 16 36 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.34 11.19 8.43 -89.70 -0.76 10.44 16 38 H 0.07 1.86 8.14 -2.38 -0.02 1.84 16 39 H 0.12 2.98 8.14 -2.39 -0.02 2.96 16 40 H 0.39 15.25 5.76 -92.70 -0.53 14.72 16 41 H 0.28 15.42 8.31 -92.71 -0.77 14.65 16 42 H 0.21 1.30 3.40 -2.91 -0.01 1.29 16 43 H 0.22 1.17 8.06 -2.91 -0.02 1.15 16 44 H 0.11 1.53 8.14 -2.38 -0.02 1.51 16 45 H 0.10 2.06 6.29 -2.39 -0.02 2.04 16 46 H 0.10 1.18 8.14 -2.38 -0.02 1.16 16 47 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 48 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -84.07 391.08 1.25 -82.83 By element: Atomic # 1 Polarization: 39.45 SS G_CDS: -0.34 Total: 39.10 kcal Atomic # 6 Polarization: 13.63 SS G_CDS: 8.09 Total: 21.72 kcal Atomic # 7 Polarization: -125.29 SS G_CDS: -8.29 Total: -133.58 kcal Atomic # 8 Polarization: -50.69 SS G_CDS: -0.11 Total: -50.79 kcal Atomic # 14 Polarization: 38.82 SS G_CDS: 1.90 Total: 40.73 kcal Total: -84.07 1.25 -82.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568737392.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.414 kcal (2) G-P(sol) polarization free energy of solvation -84.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds