Wall clock time and date at job start Tue Mar 31 2020 20:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46504 * 109.47043 * 2 1 4 4 C 1.46495 * 119.99533 * 266.80748 * 3 2 1 5 5 C 1.52996 * 109.47076 * 269.99786 * 4 3 2 6 6 N 1.46899 * 109.47436 * 180.02562 * 5 4 3 7 7 C 1.46900 * 111.00543 * 180.02562 * 6 5 4 8 8 C 1.50699 * 109.47358 * 180.02562 * 7 6 5 9 9 O 1.21294 * 120.00093 * 359.97438 * 8 7 6 10 10 N 1.34783 * 119.99980 * 179.97438 * 8 7 6 11 11 C 1.37088 * 119.99874 * 179.97438 * 10 8 7 12 12 H 1.08002 * 120.00085 * 359.97438 * 11 10 8 13 13 C 1.38948 * 119.99917 * 180.02562 * 11 10 8 14 14 N 1.31414 * 120.00357 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 120.00259 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.46919 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.46741 * 119.99659 * 15 13 11 18 18 H 1.48492 * 109.47265 * 239.99881 * 15 13 11 19 19 C 1.34777 * 120.00088 * 86.80328 * 3 2 1 20 20 O 1.21623 * 119.99555 * 174.67421 * 19 3 2 21 21 C 1.47322 * 120.00053 * 354.95065 * 19 3 2 22 22 C 1.36418 * 126.23260 * 173.86901 * 21 19 3 23 23 N 1.35378 * 106.86924 * 179.97438 * 22 21 19 24 24 C 1.46504 * 126.13868 * 179.97438 * 23 22 21 25 25 C 1.53003 * 109.47167 * 89.99544 * 24 23 22 26 26 C 1.35846 * 107.73205 * 359.97438 * 23 22 21 27 27 N 1.30171 * 108.99976 * 359.74800 * 26 23 22 28 28 H 1.09005 * 109.46758 * 60.00908 * 1 2 3 29 29 H 1.09002 * 109.46692 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47277 * 300.00429 * 1 2 3 31 31 H 1.08996 * 109.47277 * 239.99570 * 2 1 3 32 32 H 1.09005 * 109.46758 * 119.99092 * 2 1 3 33 33 H 1.08999 * 109.47883 * 29.99810 * 4 3 2 34 34 H 1.09007 * 109.47084 * 150.00044 * 4 3 2 35 35 H 1.09000 * 109.47553 * 300.00184 * 5 4 3 36 36 H 1.08999 * 109.47304 * 60.00119 * 5 4 3 37 37 H 1.00896 * 111.00357 * 56.04368 * 6 5 4 38 38 H 1.09002 * 109.46783 * 299.99788 * 7 6 5 39 39 H 1.08995 * 109.47128 * 59.99314 * 7 6 5 40 40 H 0.97001 * 119.99473 * 359.97438 * 10 8 7 41 41 H 0.96999 * 120.00586 * 180.02562 * 14 13 11 42 42 H 1.07997 * 126.56909 * 359.95608 * 22 21 19 43 43 H 1.08998 * 109.46990 * 209.99827 * 24 23 22 44 44 H 1.09004 * 109.46467 * 330.00023 * 24 23 22 45 45 H 1.08999 * 109.47035 * 60.00099 * 25 24 23 46 46 H 1.08999 * 109.46665 * 180.02562 * 25 24 23 47 47 H 1.08998 * 109.46752 * 300.00426 * 25 24 23 48 48 H 1.08000 * 125.50009 * 180.02562 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3291 2.0482 -1.2668 5 6 3.7951 1.8004 -1.6274 6 7 4.1070 2.4696 -2.8974 7 6 5.5095 2.2525 -3.2765 8 6 5.7915 2.9527 -4.5808 9 8 4.9107 3.5715 -5.1398 10 7 7.0226 2.8915 -5.1261 11 6 7.2790 3.5281 -6.3128 12 1 6.4944 4.0783 -6.8110 13 6 8.5479 3.4645 -6.8753 14 7 9.5025 2.7946 -6.2695 15 14 8.8972 4.3314 -8.4928 16 1 7.6646 5.0107 -8.9665 17 1 9.9709 5.3377 -8.2931 18 1 9.3340 3.3354 -9.5039 19 6 2.1816 2.0383 1.1654 20 8 2.6776 3.1488 1.1730 21 6 1.7649 1.4089 2.4305 22 6 1.9754 1.9029 3.6846 23 7 1.4347 1.0156 4.5523 24 6 1.4242 1.1319 6.0126 25 6 0.1627 1.8754 6.4560 26 6 0.9035 -0.0021 3.8260 27 7 1.0953 0.2352 2.5605 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5137 0.8901 33 1 1.6890 1.6497 -2.0539 34 1 2.1560 3.1196 -1.1653 35 1 4.4353 2.1989 -0.8404 36 1 3.9683 0.7290 -1.7289 37 1 3.8935 3.4546 -2.8490 38 1 6.1618 2.6535 -2.5008 39 1 5.6940 1.1842 -3.3899 40 1 7.7270 2.3970 -4.6788 41 1 10.3884 2.7505 -6.6619 42 1 2.4776 2.8251 3.9369 43 1 1.4342 0.1364 6.4564 44 1 2.3053 1.6843 6.3394 45 1 -0.7184 1.3231 6.1292 46 1 0.1552 1.9623 7.5425 47 1 0.1528 2.8709 6.0121 48 1 0.3992 -0.8662 4.2326 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568791782.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:53 Heat of formation + Delta-G solvation = 2.854219 kcal Electronic energy + Delta-G solvation = -28291.101909 eV Core-core repulsion = 24189.753216 eV Total energy + Delta-G solvation = -4101.348693 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.61476 -39.67050 -38.18586 -36.37620 -35.66033 -34.95942 -33.75627 -31.33521 -31.07462 -30.70285 -30.13075 -28.71031 -26.13986 -24.71392 -23.95155 -23.61624 -22.74175 -21.73892 -21.27163 -19.44371 -19.03048 -17.85919 -17.73997 -16.67063 -16.37093 -16.13790 -15.91780 -15.39792 -15.13339 -14.88853 -14.58790 -14.44532 -14.22305 -14.12146 -13.83130 -13.77988 -13.52293 -13.37813 -13.15251 -13.05119 -12.80571 -12.46507 -12.17577 -12.07392 -11.96352 -11.77067 -11.44346 -11.39104 -11.14726 -11.03592 -10.84862 -10.42125 -10.29103 -10.16415 -10.14240 -9.90519 -9.45472 -9.04216 -8.66508 -8.34629 -7.96402 -7.88414 -6.35306 -3.75839 1.30117 2.08919 2.16097 2.96176 3.21377 3.31353 3.38389 3.39333 3.94757 3.99106 4.03818 4.20547 4.23420 4.30684 4.50336 4.54175 4.66623 4.89776 4.94360 5.04328 5.09774 5.17532 5.24367 5.29852 5.34776 5.35311 5.46687 5.53527 5.64087 5.67100 5.76816 5.87222 5.90882 6.01636 6.07448 6.08574 6.13179 6.32932 6.34724 6.55403 6.67089 7.30479 7.32263 7.48707 7.61691 7.77155 8.13616 8.17889 8.68659 9.24701 9.61754 10.13562 10.82668 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.027031 B = 0.001677 C = 0.001632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.611588 B =16695.780775 C =17151.744797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.110 3.890 3 N -0.597 5.597 4 C 0.119 3.881 5 C 0.047 3.953 6 N -0.667 5.667 7 C 0.053 3.947 8 C 0.443 3.557 9 O -0.582 6.582 10 N -0.565 5.565 11 C -0.298 4.298 12 H 0.104 0.896 13 C 0.021 3.979 14 N -0.903 5.903 15 Si 0.930 3.070 16 H -0.268 1.268 17 H -0.282 1.282 18 H -0.282 1.282 19 C 0.600 3.400 20 O -0.544 6.544 21 C -0.059 4.059 22 C 0.035 3.965 23 N -0.457 5.457 24 C 0.098 3.902 25 C -0.171 4.171 26 C 0.179 3.821 27 N -0.453 5.453 28 H 0.045 0.955 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.098 0.902 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.031 0.969 36 H 0.070 0.930 37 H 0.350 0.650 38 H 0.043 0.957 39 H 0.085 0.915 40 H 0.392 0.608 41 H 0.270 0.730 42 H 0.186 0.814 43 H 0.098 0.902 44 H 0.095 0.905 45 H 0.065 0.935 46 H 0.079 0.921 47 H 0.065 0.935 48 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.768 -9.334 29.494 35.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.012 4.012 3 N -0.329 5.329 4 C -0.003 4.003 5 C -0.084 4.084 6 N -0.300 5.300 7 C -0.080 4.080 8 C 0.228 3.772 9 O -0.466 6.466 10 N -0.202 5.202 11 C -0.427 4.427 12 H 0.121 0.879 13 C -0.180 4.180 14 N -0.544 5.544 15 Si 0.757 3.243 16 H -0.192 1.192 17 H -0.208 1.208 18 H -0.208 1.208 19 C 0.387 3.613 20 O -0.421 6.421 21 C -0.188 4.188 22 C -0.104 4.104 23 N -0.139 5.139 24 C -0.024 4.024 25 C -0.229 4.229 26 C -0.104 4.104 27 N -0.172 5.172 28 H 0.064 0.936 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.116 0.884 33 H 0.107 0.893 34 H 0.100 0.900 35 H 0.050 0.950 36 H 0.088 0.912 37 H 0.170 0.830 38 H 0.061 0.939 39 H 0.104 0.896 40 H 0.225 0.775 41 H 0.080 0.920 42 H 0.203 0.797 43 H 0.116 0.884 44 H 0.114 0.886 45 H 0.084 0.916 46 H 0.097 0.903 47 H 0.084 0.916 48 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -18.394 -9.365 28.120 34.883 hybrid contribution 1.416 0.955 0.877 1.920 sum -16.978 -8.410 28.997 34.638 Atomic orbital electron populations 1.22034 0.95778 1.01690 1.01694 1.21751 0.94924 0.81271 1.03302 1.47755 1.64691 1.14915 1.05531 1.21405 0.95939 0.98826 0.84172 1.22258 0.95839 0.99759 0.90533 1.60011 1.20937 1.19035 1.30001 1.21649 0.88915 1.01215 0.96244 1.19825 0.83728 0.86034 0.87594 1.90520 1.45286 1.46610 1.64205 1.41866 1.09606 1.47083 1.21666 1.19767 0.96668 1.28389 0.97894 0.87852 1.25260 0.95302 0.97672 0.99807 1.69625 1.03061 1.41858 1.39904 0.85796 0.78505 0.78817 0.81194 1.19214 1.20829 1.20789 1.16999 0.77765 0.84335 0.82161 1.90812 1.44871 1.19775 1.86675 1.20536 1.08780 0.96132 0.93326 1.22586 1.01720 0.97033 0.89076 1.45549 1.42401 1.18025 1.07936 1.21976 1.00749 1.03465 0.76219 1.22181 0.96948 1.01323 1.02470 1.25296 1.03022 0.95190 0.86876 1.70880 1.15696 1.14399 1.16236 0.93616 0.92182 0.91705 0.91176 0.88363 0.89345 0.89978 0.95042 0.91178 0.83033 0.93860 0.89647 0.77467 0.91996 0.79724 0.88377 0.88646 0.91609 0.90259 0.91605 0.77471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.64 37.16 0.36 -1.09 16 2 C 0.11 1.13 5.67 -4.04 -0.02 1.11 16 3 N -0.60 -7.54 2.48 -174.99 -0.43 -7.97 16 4 C 0.12 1.61 5.61 -4.05 -0.02 1.59 16 5 C 0.05 0.69 6.01 -3.83 -0.02 0.67 16 6 N -0.67 -11.96 6.13 -115.06 -0.70 -12.66 16 7 C 0.05 1.01 6.17 -4.98 -0.03 0.98 16 8 C 0.44 11.03 7.82 -10.98 -0.09 10.95 16 9 O -0.58 -16.52 15.78 5.55 0.09 -16.43 16 10 N -0.57 -14.96 5.29 -10.96 -0.06 -15.01 16 11 C -0.30 -8.58 9.68 -14.94 -0.14 -8.73 16 12 H 0.10 3.12 7.16 -52.49 -0.38 2.75 16 13 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 14 N -0.90 -25.24 13.05 55.50 0.72 -24.52 16 15 Si 0.93 21.61 29.55 -169.99 -5.02 16.59 16 16 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 17 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 18 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 19 C 0.60 8.35 7.64 -12.57 -0.10 8.26 16 20 O -0.54 -9.21 16.52 5.26 0.09 -9.12 16 21 C -0.06 -0.66 6.46 -83.09 -0.54 -1.20 16 22 C 0.03 0.30 11.27 -16.64 -0.19 0.11 16 23 N -0.46 -2.53 2.73 -118.36 -0.32 -2.85 16 24 C 0.10 0.18 6.84 -4.04 -0.03 0.15 16 25 C -0.17 -0.29 10.24 37.16 0.38 0.09 16 26 C 0.18 1.09 12.55 -89.91 -1.13 -0.04 16 27 N -0.45 -4.20 6.15 -11.03 -0.07 -4.27 16 28 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.68 6.50 -51.93 -0.34 0.34 16 31 H 0.07 0.68 8.05 -51.93 -0.42 0.26 16 32 H 0.10 1.02 5.72 -51.93 -0.30 0.73 16 33 H 0.09 1.12 8.07 -51.93 -0.42 0.70 16 34 H 0.08 1.21 7.50 -51.93 -0.39 0.82 16 35 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.35 6.54 8.43 -39.29 -0.33 6.20 16 38 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.09 1.52 8.14 -51.93 -0.42 1.09 16 40 H 0.39 9.92 7.90 -40.82 -0.32 9.60 16 41 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 42 H 0.19 1.37 8.06 -52.49 -0.42 0.95 16 43 H 0.10 -0.01 8.14 -51.93 -0.42 -0.43 16 44 H 0.10 0.11 8.14 -51.93 -0.42 -0.32 16 45 H 0.06 0.14 8.14 -51.93 -0.42 -0.28 16 46 H 0.08 0.03 8.14 -51.93 -0.42 -0.40 16 47 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 48 H 0.21 0.45 8.06 -52.49 -0.42 0.03 16 LS Contribution 403.39 15.07 6.08 6.08 Total: -1.00 -36.25 403.39 -8.82 -45.07 By element: Atomic # 1 Polarization: 19.30 SS G_CDS: -7.52 Total: 11.78 kcal Atomic # 6 Polarization: 14.99 SS G_CDS: -1.66 Total: 13.32 kcal Atomic # 7 Polarization: -66.42 SS G_CDS: -0.86 Total: -67.28 kcal Atomic # 8 Polarization: -25.73 SS G_CDS: 0.17 Total: -25.55 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -36.25 -8.82 -45.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568791782.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.922 kcal (2) G-P(sol) polarization free energy of solvation -36.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds