Wall clock time and date at job start Tue Mar 31 2020 20:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46504 * 109.47043 * 2 1 4 4 C 1.46495 * 119.99533 * 266.80748 * 3 2 1 5 5 C 1.52996 * 109.47076 * 269.99786 * 4 3 2 6 6 N 1.46899 * 109.47436 * 180.02562 * 5 4 3 7 7 C 1.46900 * 111.00543 * 180.02562 * 6 5 4 8 8 C 1.50699 * 109.47358 * 180.02562 * 7 6 5 9 9 O 1.21294 * 120.00093 * 359.97438 * 8 7 6 10 10 N 1.34783 * 119.99980 * 179.97438 * 8 7 6 11 11 C 1.37088 * 119.99874 * 179.97438 * 10 8 7 12 12 H 1.08002 * 120.00085 * 359.97438 * 11 10 8 13 13 C 1.38948 * 119.99917 * 180.02562 * 11 10 8 14 14 N 1.31414 * 120.00357 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 120.00259 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.46919 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.46741 * 119.99659 * 15 13 11 18 18 H 1.48492 * 109.47265 * 239.99881 * 15 13 11 19 19 C 1.34777 * 120.00088 * 86.80328 * 3 2 1 20 20 O 1.21623 * 119.99555 * 174.67421 * 19 3 2 21 21 C 1.47322 * 120.00053 * 354.95065 * 19 3 2 22 22 C 1.36418 * 126.23260 * 173.86901 * 21 19 3 23 23 N 1.35378 * 106.86924 * 179.97438 * 22 21 19 24 24 C 1.46504 * 126.13868 * 179.97438 * 23 22 21 25 25 C 1.53003 * 109.47167 * 89.99544 * 24 23 22 26 26 C 1.35846 * 107.73205 * 359.97438 * 23 22 21 27 27 N 1.30171 * 108.99976 * 359.74800 * 26 23 22 28 28 H 1.09005 * 109.46758 * 60.00908 * 1 2 3 29 29 H 1.09002 * 109.46692 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47277 * 300.00429 * 1 2 3 31 31 H 1.08996 * 109.47277 * 239.99570 * 2 1 3 32 32 H 1.09005 * 109.46758 * 119.99092 * 2 1 3 33 33 H 1.08999 * 109.47883 * 29.99810 * 4 3 2 34 34 H 1.09007 * 109.47084 * 150.00044 * 4 3 2 35 35 H 1.09000 * 109.47553 * 300.00184 * 5 4 3 36 36 H 1.08999 * 109.47304 * 60.00119 * 5 4 3 37 37 H 1.00896 * 111.00357 * 56.04368 * 6 5 4 38 38 H 1.09002 * 109.46783 * 299.99788 * 7 6 5 39 39 H 1.08995 * 109.47128 * 59.99314 * 7 6 5 40 40 H 0.97001 * 119.99473 * 359.97438 * 10 8 7 41 41 H 0.96999 * 120.00586 * 180.02562 * 14 13 11 42 42 H 1.07997 * 126.56909 * 359.95608 * 22 21 19 43 43 H 1.08998 * 109.46990 * 209.99827 * 24 23 22 44 44 H 1.09004 * 109.46467 * 330.00023 * 24 23 22 45 45 H 1.08999 * 109.47035 * 60.00099 * 25 24 23 46 46 H 1.08999 * 109.46665 * 180.02562 * 25 24 23 47 47 H 1.08998 * 109.46752 * 300.00426 * 25 24 23 48 48 H 1.08000 * 125.50009 * 180.02562 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3291 2.0482 -1.2668 5 6 3.7951 1.8004 -1.6274 6 7 4.1070 2.4696 -2.8974 7 6 5.5095 2.2525 -3.2765 8 6 5.7915 2.9527 -4.5808 9 8 4.9107 3.5715 -5.1398 10 7 7.0226 2.8915 -5.1261 11 6 7.2790 3.5281 -6.3128 12 1 6.4944 4.0783 -6.8110 13 6 8.5479 3.4645 -6.8753 14 7 9.5025 2.7946 -6.2695 15 14 8.8972 4.3314 -8.4928 16 1 7.6646 5.0107 -8.9665 17 1 9.9709 5.3377 -8.2931 18 1 9.3340 3.3354 -9.5039 19 6 2.1816 2.0383 1.1654 20 8 2.6776 3.1488 1.1730 21 6 1.7649 1.4089 2.4305 22 6 1.9754 1.9029 3.6846 23 7 1.4347 1.0156 4.5523 24 6 1.4242 1.1319 6.0126 25 6 0.1627 1.8754 6.4560 26 6 0.9035 -0.0021 3.8260 27 7 1.0953 0.2352 2.5605 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5137 0.8901 33 1 1.6890 1.6497 -2.0539 34 1 2.1560 3.1196 -1.1653 35 1 4.4353 2.1989 -0.8404 36 1 3.9683 0.7290 -1.7289 37 1 3.8935 3.4546 -2.8490 38 1 6.1618 2.6535 -2.5008 39 1 5.6940 1.1842 -3.3899 40 1 7.7270 2.3970 -4.6788 41 1 10.3884 2.7505 -6.6619 42 1 2.4776 2.8251 3.9369 43 1 1.4342 0.1364 6.4564 44 1 2.3053 1.6843 6.3394 45 1 -0.7184 1.3231 6.1292 46 1 0.1552 1.9623 7.5425 47 1 0.1528 2.8709 6.0121 48 1 0.3992 -0.8662 4.2326 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568791782.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:52 Heat of formation + Delta-G solvation = -21.637203 kcal Electronic energy + Delta-G solvation = -28292.163937 eV Core-core repulsion = 24189.753216 eV Total energy + Delta-G solvation = -4102.410721 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.17924 -40.68709 -40.13939 -37.57671 -36.57607 -35.94120 -35.64743 -33.29465 -32.17688 -31.20799 -30.83525 -29.84291 -27.73882 -25.97584 -24.89686 -24.37669 -23.77646 -22.66119 -21.79736 -21.14967 -20.12516 -19.86445 -18.47184 -17.88912 -17.60031 -17.16396 -16.93256 -16.66240 -16.48099 -15.95287 -15.75266 -15.50257 -15.32385 -15.19643 -14.91125 -14.77782 -14.61129 -14.44043 -14.34327 -13.88192 -13.64133 -13.50750 -13.40183 -13.31472 -12.97110 -12.94626 -12.73472 -12.62275 -12.40909 -12.20071 -12.10840 -12.08444 -11.87875 -11.52254 -11.26010 -10.86222 -10.55648 -10.40002 -10.02724 -9.85100 -9.49916 -9.42951 -8.47212 -5.96390 0.57074 1.36836 1.41887 1.48684 1.56794 1.69724 2.02517 2.04654 2.30203 2.51243 2.97341 3.19484 3.38334 3.54234 3.75986 3.90891 3.95633 4.07038 4.11698 4.18628 4.26257 4.30756 4.43059 4.44231 4.46192 4.48614 4.54737 4.62181 4.70392 4.76587 4.81847 4.85398 4.91388 5.01927 5.14137 5.19255 5.23811 5.38900 5.40656 5.61668 5.63153 5.83191 6.05033 6.16618 6.28067 6.43273 6.58724 6.83617 7.11334 7.19927 7.54037 8.09275 8.70520 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.027031 B = 0.001677 C = 0.001632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.611588 B =16695.780775 C =17151.744797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.111 3.889 3 N -0.596 5.596 4 C 0.125 3.875 5 C 0.058 3.942 6 N -0.675 5.675 7 C 0.066 3.934 8 C 0.439 3.561 9 O -0.622 6.622 10 N -0.572 5.572 11 C -0.336 4.336 12 H 0.080 0.920 13 C -0.013 4.013 14 N -0.921 5.921 15 Si 0.996 3.004 16 H -0.273 1.273 17 H -0.270 1.270 18 H -0.269 1.269 19 C 0.591 3.409 20 O -0.588 6.588 21 C -0.094 4.094 22 C 0.037 3.963 23 N -0.449 5.449 24 C 0.094 3.906 25 C -0.168 4.168 26 C 0.193 3.807 27 N -0.475 5.475 28 H 0.037 0.963 29 H 0.078 0.922 30 H 0.053 0.947 31 H 0.079 0.921 32 H 0.101 0.899 33 H 0.099 0.901 34 H 0.064 0.936 35 H 0.020 0.980 36 H 0.084 0.916 37 H 0.344 0.656 38 H 0.061 0.939 39 H 0.108 0.892 40 H 0.397 0.603 41 H 0.278 0.722 42 H 0.188 0.812 43 H 0.128 0.872 44 H 0.104 0.896 45 H 0.063 0.937 46 H 0.097 0.903 47 H 0.046 0.954 48 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.024 -11.237 31.195 37.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.011 4.011 3 N -0.327 5.327 4 C 0.002 3.998 5 C -0.072 4.072 6 N -0.307 5.307 7 C -0.066 4.066 8 C 0.226 3.774 9 O -0.508 6.508 10 N -0.209 5.209 11 C -0.465 4.465 12 H 0.098 0.902 13 C -0.213 4.213 14 N -0.561 5.561 15 Si 0.819 3.181 16 H -0.198 1.198 17 H -0.196 1.196 18 H -0.194 1.194 19 C 0.381 3.619 20 O -0.469 6.469 21 C -0.222 4.222 22 C -0.104 4.104 23 N -0.130 5.130 24 C -0.027 4.027 25 C -0.226 4.226 26 C -0.091 4.091 27 N -0.194 5.194 28 H 0.057 0.943 29 H 0.097 0.903 30 H 0.072 0.928 31 H 0.097 0.903 32 H 0.119 0.881 33 H 0.117 0.883 34 H 0.082 0.918 35 H 0.039 0.961 36 H 0.103 0.897 37 H 0.162 0.838 38 H 0.078 0.922 39 H 0.126 0.874 40 H 0.230 0.770 41 H 0.087 0.913 42 H 0.205 0.795 43 H 0.146 0.854 44 H 0.122 0.878 45 H 0.082 0.918 46 H 0.115 0.885 47 H 0.065 0.935 48 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -18.652 -11.323 29.865 36.987 hybrid contribution 1.444 1.495 0.484 2.134 sum -17.208 -9.828 30.349 36.246 Atomic orbital electron populations 1.21938 0.94987 1.02551 1.00733 1.21882 0.95497 0.79884 1.03805 1.47850 1.64289 1.15695 1.04849 1.21253 0.95322 0.98119 0.85112 1.22217 0.96353 0.99970 0.88636 1.60035 1.20043 1.18832 1.31786 1.21526 0.90098 1.01681 0.93337 1.20775 0.82645 0.85147 0.88843 1.90488 1.46298 1.48229 1.65787 1.41920 1.10346 1.47243 1.21404 1.19740 0.97020 1.30229 0.99515 0.90246 1.26079 0.94509 0.97813 1.02891 1.69684 1.03468 1.41901 1.41091 0.84831 0.78155 0.78017 0.77064 1.19790 1.19568 1.19438 1.17501 0.77073 0.83961 0.83349 1.90768 1.47075 1.21640 1.87439 1.20289 1.11333 0.97782 0.92763 1.22667 1.01293 0.97419 0.89038 1.45782 1.41032 1.16945 1.09197 1.22314 1.01116 1.05401 0.73827 1.22159 0.96787 1.00134 1.03484 1.26094 1.01318 0.95643 0.86064 1.70780 1.16477 1.13922 1.18265 0.94342 0.90332 0.92814 0.90291 0.88120 0.88322 0.91759 0.96141 0.89730 0.83807 0.92161 0.87417 0.76961 0.91252 0.79453 0.85443 0.87811 0.91828 0.88457 0.93511 0.73460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 9.64 71.98 0.69 -1.87 16 2 C 0.11 2.19 5.67 86.38 0.49 2.68 16 3 N -0.60 -15.24 2.48 -825.80 -2.05 -17.28 16 4 C 0.13 3.45 5.61 86.38 0.48 3.93 16 5 C 0.06 1.72 6.01 86.30 0.52 2.24 16 6 N -0.67 -24.21 6.13 -517.95 -3.17 -27.39 16 7 C 0.07 2.52 6.17 85.56 0.53 3.04 16 8 C 0.44 22.20 7.82 87.66 0.69 22.88 16 9 O -0.62 -36.27 15.78 -3.07 -0.05 -36.31 16 10 N -0.57 -30.76 5.29 -306.98 -1.62 -32.39 16 11 C -0.34 -19.76 9.68 84.04 0.81 -18.94 16 12 H 0.08 4.98 7.16 -2.91 -0.02 4.96 16 13 C -0.01 -0.73 5.50 84.93 0.47 -0.26 16 14 N -0.92 -50.95 13.05 21.66 0.28 -50.67 16 15 Si 1.00 44.08 29.55 68.60 2.03 46.11 16 16 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 17 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 18 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 19 C 0.59 17.10 7.64 86.63 0.66 17.76 16 20 O -0.59 -21.09 16.52 -4.10 -0.07 -21.16 16 21 C -0.09 -2.10 6.46 40.50 0.26 -1.84 16 22 C 0.04 0.62 11.27 83.72 0.94 1.57 16 23 N -0.45 -4.04 2.73 -528.38 -1.44 -5.48 16 24 C 0.09 0.07 6.84 86.38 0.59 0.66 16 25 C -0.17 -0.22 10.24 71.98 0.74 0.52 16 26 C 0.19 1.83 12.55 180.10 2.26 4.09 16 27 N -0.48 -8.22 6.15 -188.82 -1.16 -9.38 16 28 H 0.04 0.73 8.14 -2.38 -0.02 0.71 16 29 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.05 1.10 6.50 -2.39 -0.02 1.08 16 31 H 0.08 1.40 8.05 -2.39 -0.02 1.39 16 32 H 0.10 1.99 5.72 -2.38 -0.01 1.98 16 33 H 0.10 2.48 8.07 -2.39 -0.02 2.47 16 34 H 0.06 2.00 7.50 -2.38 -0.02 1.98 16 35 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 37 H 0.34 13.16 8.43 -89.70 -0.76 12.41 16 38 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 39 H 0.11 3.65 8.14 -2.39 -0.02 3.63 16 40 H 0.40 20.23 7.90 -92.71 -0.73 19.50 16 41 H 0.28 14.31 8.31 -92.71 -0.77 13.54 16 42 H 0.19 2.87 8.06 -2.91 -0.02 2.85 16 43 H 0.13 -0.57 8.14 -2.39 -0.02 -0.59 16 44 H 0.10 -0.04 8.14 -2.38 -0.02 -0.05 16 45 H 0.06 0.13 8.14 -2.39 -0.02 0.11 16 46 H 0.10 -0.20 8.14 -2.39 -0.02 -0.22 16 47 H 0.05 0.25 8.14 -2.39 -0.02 0.24 16 48 H 0.25 0.02 8.06 -2.91 -0.02 0.00 16 Total: -1.00 -80.76 403.39 2.38 -78.38 By element: Atomic # 1 Polarization: 39.63 SS G_CDS: -0.51 Total: 39.12 kcal Atomic # 6 Polarization: 26.32 SS G_CDS: 10.14 Total: 36.45 kcal Atomic # 7 Polarization: -133.43 SS G_CDS: -9.16 Total: -142.59 kcal Atomic # 8 Polarization: -57.36 SS G_CDS: -0.12 Total: -57.48 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -80.76 2.38 -78.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568791782.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.740 kcal (2) G-P(sol) polarization free energy of solvation -80.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds