Wall clock time and date at job start Tue Mar 31 2020 20:06:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47143 * 2 1 4 4 C 1.53001 * 109.47043 * 240.00371 * 2 1 3 5 5 N 1.46897 * 109.47220 * 184.99986 * 4 2 1 6 6 C 1.46895 * 111.00102 * 179.97438 * 5 4 2 7 7 C 1.50705 * 109.47407 * 179.97438 * 6 5 4 8 8 O 1.21294 * 119.99876 * 0.02562 * 7 6 5 9 9 N 1.34770 * 120.00156 * 179.97438 * 7 6 5 10 10 C 1.37098 * 119.99865 * 179.97438 * 9 7 6 11 11 H 1.07995 * 120.00505 * 0.02562 * 10 9 7 12 12 C 1.38954 * 119.99897 * 180.02562 * 10 9 7 13 13 N 1.31412 * 119.99957 * 180.02562 * 12 10 9 14 14 Si 1.86799 * 120.00109 * 0.02562 * 12 10 9 15 15 H 1.48494 * 109.47233 * 90.00236 * 14 12 10 16 16 H 1.48502 * 109.47117 * 210.00177 * 14 12 10 17 17 H 1.48503 * 109.46997 * 329.99803 * 14 12 10 18 18 N 1.46499 * 109.47031 * 120.00123 * 2 1 3 19 19 C 1.34773 * 120.00421 * 274.99481 * 18 2 1 20 20 O 1.21283 * 119.99675 * 0.02562 * 19 18 2 21 21 C 1.50701 * 120.00348 * 179.97438 * 19 18 2 22 22 C 1.53000 * 109.46863 * 66.00308 * 21 19 18 23 23 C 1.52998 * 109.47134 * 306.00368 * 21 19 18 24 24 C 1.50697 * 109.46857 * 186.00119 * 21 19 18 25 25 C 1.34671 * 126.58917 * 237.64777 * 24 21 19 26 26 N 1.34129 * 108.02139 * 180.02562 * 25 24 21 27 27 C 1.30508 * 109.25561 * 0.02562 * 26 25 24 28 28 N 1.35045 * 108.69739 * 0.26064 * 27 26 25 29 29 H 0.97002 * 126.39762 * 179.73565 * 28 27 26 30 30 H 1.08996 * 109.47405 * 59.99638 * 1 2 3 31 31 H 1.09002 * 109.47143 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47020 * 299.99839 * 1 2 3 33 33 H 1.09001 * 109.47004 * 305.00055 * 4 2 1 34 34 H 1.08999 * 109.47469 * 64.99782 * 4 2 1 35 35 H 1.00899 * 111.00463 * 303.95253 * 5 4 2 36 36 H 1.09004 * 109.47739 * 300.00113 * 6 5 4 37 37 H 1.09005 * 109.47222 * 60.00235 * 6 5 4 38 38 H 0.96999 * 120.00303 * 0.02562 * 9 7 6 39 39 H 0.97000 * 120.00374 * 180.02562 * 13 12 10 40 40 H 0.97003 * 119.99605 * 95.00578 * 18 2 1 41 41 H 1.08996 * 109.47303 * 180.02562 * 22 21 19 42 42 H 1.08999 * 109.46957 * 300.00133 * 22 21 19 43 43 H 1.09000 * 109.47006 * 59.99684 * 22 21 19 44 44 H 1.09001 * 109.47002 * 299.99659 * 23 21 19 45 45 H 1.08999 * 109.47138 * 59.99590 * 23 21 19 46 46 H 1.08996 * 109.46919 * 179.97438 * 23 21 19 47 47 H 1.07999 * 125.98975 * 0.05182 * 25 24 21 48 48 H 1.07992 * 125.65230 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5040 -0.8266 -1.1905 6 6 4.0302 -1.5157 -2.3763 7 6 5.5316 -1.6043 -2.2809 8 8 6.1067 -1.1394 -1.3195 9 7 6.2352 -2.2008 -3.2634 10 6 7.6011 -2.2808 -3.1769 11 1 8.1133 -1.8662 -2.3213 12 6 8.3267 -2.8954 -4.1902 13 7 9.6359 -2.9726 -4.1070 14 14 7.4410 -3.6120 -5.6706 15 1 7.3208 -2.5741 -6.7257 16 1 8.2120 -4.7666 -6.1976 17 1 6.0861 -4.0652 -5.2652 18 7 2.0183 -0.6906 1.1961 19 6 2.1471 -0.0184 2.3571 20 8 1.8583 1.1583 2.4117 21 6 2.6489 -0.7290 3.5877 22 6 4.1047 -1.1494 3.3758 23 6 1.7919 -1.9700 3.8450 24 6 2.5609 0.1970 4.7734 25 6 3.5759 0.5752 5.5736 26 7 3.0821 1.4015 6.5077 27 6 1.7995 1.5492 6.3170 28 7 1.4327 0.8096 5.2483 29 1 0.5374 0.7296 4.8836 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.6053 -1.7197 -1.2953 34 1 1.7516 -0.1583 -2.1370 35 1 3.9280 0.0826 -1.0825 36 1 3.6094 -2.5199 -2.4297 37 1 3.7556 -0.9586 -3.2721 38 1 5.7754 -2.5729 -4.0322 39 1 10.1424 -3.4013 -4.8145 40 1 2.2490 -1.6318 1.1525 41 1 4.4675 -1.6637 4.2657 42 1 4.1683 -1.8191 2.5182 43 1 4.7151 -0.2652 3.1924 44 1 0.7548 -1.6705 3.9960 45 1 1.8555 -2.6397 2.9874 46 1 2.1551 -2.4842 4.7348 47 1 4.6068 0.2675 5.4795 48 1 1.1401 2.1587 6.9169 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569030398.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:01 Heat of formation + Delta-G solvation = -16.436973 kcal Electronic energy + Delta-G solvation = -29411.523837 eV Core-core repulsion = 25309.338615 eV Total energy + Delta-G solvation = -4102.185222 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.29424 -40.10233 -38.55272 -36.93474 -35.54216 -34.40401 -33.75252 -32.51142 -31.70341 -30.99383 -28.73185 -27.84070 -27.49160 -25.16542 -24.24229 -23.18258 -22.20736 -21.38548 -20.80053 -19.91715 -19.43029 -18.50172 -18.16297 -16.85501 -16.72685 -15.95762 -15.43419 -15.27718 -14.97147 -14.87977 -14.54302 -14.40919 -14.24240 -14.15144 -14.03044 -13.57040 -13.42779 -13.24783 -13.01875 -12.76139 -12.59749 -12.50979 -12.29899 -12.27673 -12.16535 -11.82135 -11.78765 -11.74417 -11.45975 -11.20327 -11.07623 -10.63529 -10.14707 -10.05113 -10.01171 -9.78682 -9.61163 -9.16446 -8.66283 -8.47919 -8.28237 -8.21004 -6.34429 -3.86142 1.91324 2.52244 2.97097 2.98490 3.00879 3.03031 3.11801 3.19466 3.69100 3.94455 4.06739 4.24013 4.45597 4.61668 4.62715 4.65628 4.76826 4.83443 4.94147 5.11515 5.18287 5.21130 5.29105 5.30642 5.33443 5.41309 5.44060 5.49732 5.54585 5.57379 5.69240 5.72653 5.75472 5.81092 5.85550 5.91547 6.00696 6.19489 6.37662 6.63630 6.94611 7.24923 7.42010 7.44440 7.54136 7.97152 8.10742 8.12315 8.55653 8.91393 9.38524 9.78186 10.78610 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.016503 B = 0.002372 C = 0.002162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.268668 B =11803.824108 C =12947.278654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.144 3.856 3 H 0.086 0.914 4 C 0.048 3.952 5 N -0.666 5.666 6 C 0.048 3.952 7 C 0.448 3.552 8 O -0.563 6.563 9 N -0.590 5.590 10 C -0.305 4.305 11 H 0.120 0.880 12 C 0.041 3.959 13 N -0.880 5.880 14 Si 0.880 3.120 15 H -0.271 1.271 16 H -0.276 1.276 17 H -0.270 1.270 18 N -0.702 5.702 19 C 0.523 3.477 20 O -0.542 6.542 21 C -0.004 4.004 22 C -0.139 4.139 23 C -0.141 4.141 24 C 0.009 3.991 25 C -0.018 4.018 26 N -0.495 5.495 27 C 0.180 3.820 28 N -0.553 5.553 29 H 0.416 0.584 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.077 0.923 34 H 0.043 0.957 35 H 0.353 0.647 36 H 0.087 0.913 37 H 0.045 0.955 38 H 0.370 0.630 39 H 0.274 0.726 40 H 0.406 0.594 41 H 0.073 0.927 42 H 0.078 0.922 43 H 0.071 0.929 44 H 0.054 0.946 45 H 0.071 0.929 46 H 0.073 0.927 47 H 0.170 0.830 48 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.485 1.213 11.267 26.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.039 3.961 3 H 0.104 0.896 4 C -0.082 4.082 5 N -0.299 5.299 6 C -0.085 4.085 7 C 0.234 3.766 8 O -0.445 6.445 9 N -0.230 5.230 10 C -0.434 4.434 11 H 0.137 0.863 12 C -0.162 4.162 13 N -0.520 5.520 14 Si 0.707 3.293 15 H -0.197 1.197 16 H -0.202 1.202 17 H -0.195 1.195 18 N -0.353 5.353 19 C 0.309 3.691 20 O -0.419 6.419 21 C -0.009 4.009 22 C -0.197 4.197 23 C -0.198 4.198 24 C -0.108 4.108 25 C -0.166 4.166 26 N -0.214 5.214 27 C -0.104 4.104 28 N -0.155 5.155 29 H 0.253 0.747 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.096 0.904 34 H 0.062 0.938 35 H 0.173 0.827 36 H 0.105 0.895 37 H 0.063 0.937 38 H 0.203 0.797 39 H 0.084 0.916 40 H 0.241 0.759 41 H 0.092 0.908 42 H 0.097 0.903 43 H 0.090 0.910 44 H 0.073 0.927 45 H 0.090 0.910 46 H 0.092 0.908 47 H 0.187 0.813 48 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -22.582 2.123 12.884 26.085 hybrid contribution -1.457 -0.767 -2.943 3.373 sum -24.038 1.356 9.941 26.048 Atomic orbital electron populations 1.22127 0.95028 1.02169 1.02545 1.20944 0.93513 0.97583 0.84038 0.89554 1.22313 0.89478 1.00699 0.95739 1.60047 1.03081 1.27082 1.39694 1.21716 0.95150 0.99986 0.91649 1.19682 0.87889 0.84245 0.84780 1.90578 1.70947 1.50450 1.32489 1.42208 1.07874 1.52897 1.19975 1.19427 0.79479 1.36032 1.08472 0.86261 1.25050 0.95447 0.97636 0.98053 1.69620 1.05075 1.43307 1.33999 0.86669 0.79561 0.79809 0.83308 1.19681 1.20153 1.19522 1.45802 1.66414 1.14414 1.08706 1.20395 0.77180 0.87066 0.84495 1.90699 1.50272 1.15745 1.85217 1.19242 0.99351 0.93547 0.88771 1.21855 0.91421 1.02935 1.03463 1.21918 0.98702 0.95778 1.03438 1.20505 0.87551 1.03034 0.99691 1.22091 0.99132 1.00626 0.94759 1.70282 1.07469 1.17993 1.25613 1.24876 0.93744 0.99890 0.91847 1.43077 1.10486 1.36848 1.25052 0.74684 0.91587 0.92293 0.92100 0.90425 0.93847 0.82732 0.89482 0.93747 0.79733 0.91577 0.75874 0.90781 0.90306 0.91013 0.92717 0.91049 0.90769 0.81316 0.77869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.23 9.48 37.16 0.35 -0.87 16 2 C 0.14 1.38 2.81 -67.93 -0.19 1.19 16 3 H 0.09 1.02 7.58 -51.93 -0.39 0.63 16 4 C 0.05 0.45 5.24 -3.83 -0.02 0.43 16 5 N -0.67 -8.97 5.85 -115.06 -0.67 -9.64 16 6 C 0.05 0.71 6.17 -4.98 -0.03 0.68 16 7 C 0.45 9.66 7.82 -10.99 -0.09 9.57 16 8 O -0.56 -14.50 15.78 5.55 0.09 -14.42 16 9 N -0.59 -13.56 5.09 -10.96 -0.06 -13.62 16 10 C -0.31 -8.46 10.16 -14.93 -0.15 -8.61 16 11 H 0.12 3.80 7.39 -52.49 -0.39 3.41 16 12 C 0.04 1.11 5.50 -17.47 -0.10 1.02 16 13 N -0.88 -25.40 13.96 55.50 0.77 -24.62 16 14 Si 0.88 18.92 27.74 -169.99 -4.71 14.21 16 15 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 16 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 17 H -0.27 -5.24 6.52 56.52 0.37 -4.87 16 18 N -0.70 -6.84 4.64 -53.81 -0.25 -7.09 16 19 C 0.52 6.02 6.44 -10.99 -0.07 5.95 16 20 O -0.54 -8.09 15.47 5.55 0.09 -8.00 16 21 C 0.00 -0.04 0.86 -156.81 -0.13 -0.18 16 22 C -0.14 -1.39 7.36 37.16 0.27 -1.11 16 23 C -0.14 -0.97 8.30 37.16 0.31 -0.66 16 24 C 0.01 0.10 5.03 -81.60 -0.41 -0.31 16 25 C -0.02 -0.23 10.84 -17.81 -0.19 -0.42 16 26 N -0.49 -6.57 11.25 -14.66 -0.16 -6.74 16 27 C 0.18 1.81 13.04 -90.37 -1.18 0.63 16 28 N -0.55 -5.28 5.84 -10.30 -0.06 -5.34 16 29 H 0.42 3.05 8.96 -40.82 -0.37 2.68 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 35 H 0.35 5.37 8.43 -39.29 -0.33 5.04 16 36 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.37 7.43 5.76 -40.82 -0.24 7.19 16 39 H 0.27 7.28 8.31 -40.82 -0.34 6.95 16 40 H 0.41 3.52 7.53 -40.82 -0.31 3.21 16 41 H 0.07 0.63 7.88 -51.93 -0.41 0.22 16 42 H 0.08 0.79 8.00 -51.93 -0.42 0.38 16 43 H 0.07 0.85 8.04 -51.93 -0.42 0.43 16 44 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 45 H 0.07 0.41 7.25 -51.93 -0.38 0.03 16 46 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 47 H 0.17 1.92 7.33 -52.49 -0.38 1.53 16 48 H 0.20 1.20 8.06 -52.49 -0.42 0.78 16 LS Contribution 399.21 15.07 6.02 6.02 Total: -1.00 -36.10 399.21 -8.00 -44.10 By element: Atomic # 1 Polarization: 25.26 SS G_CDS: -7.42 Total: 17.84 kcal Atomic # 6 Polarization: 8.93 SS G_CDS: -1.63 Total: 7.30 kcal Atomic # 7 Polarization: -66.62 SS G_CDS: -0.43 Total: -67.05 kcal Atomic # 8 Polarization: -22.59 SS G_CDS: 0.17 Total: -22.42 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -4.71 Total: 14.21 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -36.10 -8.00 -44.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569030398.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.663 kcal (2) G-P(sol) polarization free energy of solvation -36.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds